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github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop

Workshop delivered by OSCSA to Saudi FDA
https://github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop

Images cannot be wider than the page

2b419e33634a634c26f995777fd5991112a424db authored over 8 years ago by Greg Wilson <[email protected]>
Merge branch '2016-06' of github.com:swcarpentry/styles into 2016-06

570451a88f4071708bd73e83f0f6f42bdc6a5dfc authored over 8 years ago by Greg Wilson <[email protected]>
Looking for missing or superfluous images

030ac5c0854807db9325810cdc2caa7fc933ab24 authored over 8 years ago by Greg Wilson <[email protected]>
Merge pull request #73 from fmichonneau/knitr_fig_path

add function knitr_fig_path

06c8f2607b0218917877dcb1c618f05b3c1566dd authored over 8 years ago by Greg Wilson <[email protected]>
Lesson checking parameter handling

fb17830636a349a73491a28b21624bf2c74a10f1 authored over 8 years ago by Greg Wilson <[email protected]>
add function knitr_fig_path

634e055b258edd492180fbcfd15664a3f4b7263e authored over 8 years ago by Francois Michonneau <[email protected]>
Checking ends of lines

c2f89a7a8d78a71070e91ac3a2b6e5a99095e8b3 authored over 8 years ago by Greg Wilson <[email protected]>
Merge branch 'move-data' of https://github.com/fmichonneau/styles into fmichonneau-move-data

acb49f78a3c69a1bcb0c50e926e6a507a1ec1c3d authored over 8 years ago by Greg Wilson <[email protected]>
re-add ./data folder

ea8797f21483b4ee3d8f6e49cda278193a506821 authored over 8 years ago by Francois Michonneau <[email protected]>
simplify to single _episodes_rmd/data folder

993bac708dfb9d677bf5245d48b09742fa46d5a3 authored over 8 years ago by Francois Michonneau <[email protected]>
Merge branch 'styling-workshops' into 2016-06

8237ab5050741bd87040e03b2dc3f30c1aec580b authored over 8 years ago by Greg Wilson <[email protected]>
Merge branch 'markdownify' into 2016-06

4a0ac26f0e442254c8d42100fc0d2f818408f9ff authored over 8 years ago by Greg Wilson <[email protected]>
Merge branch 'converting-to-reporter' into 2016-06

ae6d6f6790fa8b957cd1e0b65a831d999f8add78 authored over 8 years ago by Greg Wilson <[email protected]>
Merge branch '2016-06' of github.com:swcarpentry/styles into 2016-06

40dbc703e9fcc162aca3244c92a552acc4805db4 authored over 8 years ago by Greg Wilson <[email protected]>
Updating contribution guidelines in boilerplate

079d7d50e9e2235aa0c99fc687ef30135dcfad53 authored over 8 years ago by Greg Wilson <[email protected]>
Merge pull request #67 from gvwilson/clean-rmd

Only cleaning intermediate R files on demand.

4c788a5b2f0f1ed76c40c3e017cccbb0a85cdd08 authored over 8 years ago by Francois Michonneau <[email protected]>
Making pages work for workshops as well as lessons

de59b96f5dd9d7ded6cff97ce4a11146626c884d authored over 8 years ago by Greg Wilson <[email protected]>
Styling workshops correctly.

1. Use site.root for root path if set, otherwise use site.github.url.
2. Display extra files f...

e0f4c7a8e180a63dcb3ee60e755ff3beaeccd461 authored over 8 years ago by Greg Wilson <[email protected]>
Markdownifying questions, keypoints, etc.

c3a1639641dd07b16884daa26d00b49eccb93c84 authored over 8 years ago by Greg Wilson <[email protected]>
Adding error handling for YAML import.

1. Moving all YAML library usage into 'util.py' via utility function.
2. Wrapping 'import yaml...

046dfbd4426dae68799194a428cdacf417d5ea3d authored over 8 years ago by Greg Wilson <[email protected]>
Checking CONTRIBUTING.md (without YAML)

805c05eb797c673763571dca37044c219697e318 authored over 8 years ago by Greg Wilson <[email protected]>
Converting workshop checker to use Reporter class.

1. Converting error reporting.
2. Simplifying checking logic.
3. Refactoring metadata loading...

ac67ebc4a0303b28baf941ccf7cd465a8fecf970 authored over 8 years ago by Greg Wilson <[email protected]>
Checking for non-Markdown files.

Closes #55.

519cd35bd95dbebc8e54b0279cd928a3c310804d authored over 8 years ago by Greg Wilson <[email protected]>
Only cleaning intermediate R files on demand.

1. Splitting commands to clean intermediate R files into separate target. These files must be ...

5217736aeb4b2e9f76a8cecf4d127a094a901281 authored over 8 years ago by Greg Wilson <[email protected]>
move data/ into _episodes/ and _episodes_rmd/

`generate_md_episodes()` is modified such that datasets storred into
_episodes_rmd/data/ needed ...

41a7763598956d7b03a3cbb659d37ea488576b3f authored over 8 years ago by Francois Michonneau <[email protected]>
Merge pull request #64 from gvwilson/building-r

Only try building R files if there are some

c56521846387055aab9436bb26d349bb738114b9 authored over 8 years ago by Greg Wilson <[email protected]>
Changing text of auto-generated file

05c8b44a7d3d492511319c704269dd4a82426b73 authored over 8 years ago by Greg Wilson <[email protected]>
Merge branch '2016-06' into building-r

2e8a6b0c98b2e93521984c6ad1fe12d00dbc27b6 authored over 8 years ago by Greg Wilson <[email protected]>
Updating _config_dev.yml to match changes to root and repo vars

7c21775ecf42d7f2121ef174d605f5d39c472146 authored over 8 years ago by Greg Wilson <[email protected]>
Switching to site.root and site.repo

1dcf9fc21ecb1ae1ca234871b075f0be78d1d323 authored over 8 years ago by Greg Wilson <[email protected]>
Only try building R files if there are some

08d224ae517097404eba6ce981e8f16e9593eedf authored over 8 years ago by Greg Wilson <[email protected]>
Better display of file groups in Makefile

86676036304da64ece2da1a880cedecf07558426 authored over 8 years ago by Greg Wilson <[email protected]>
Merge pull request #62 from fmichonneau/fix-knitr-env

use anonymous function to generate markdown files

02b4ec14c35b6a3c3ddbb31fd3865157f3519dd6 authored over 8 years ago by Francois Michonneau <[email protected]>
use anonymous function to generate markdown files

4e8365b00c3e3ff39dacb895c64af6e8f883f619 authored over 8 years ago by Francois Michonneau <[email protected]>
Checking metadata fields more carefully

0c9c1533a0956617f7c14b8adced2057d70169bc authored over 8 years ago by Greg Wilson <[email protected]>
Printing error messages in sorted order

fc98097b0eb67b895f57c41208f82499cbcdb8fa authored over 8 years ago by Greg Wilson <[email protected]>
Checking that episodes are numbered consecutively

3c28d16e4ca4a5fde52e46120d3ea408f8e57e08 authored over 8 years ago by Greg Wilson <[email protected]>
Making line-length checking optional for lessons.

1. Modify `read_markdown` to return list of (index, line, line_length).
2. Modify `lesson_chec...

2a53ed7304d813edeab9a1cbbdf226413a5d6f53 authored over 8 years ago by Greg Wilson <[email protected]>
Raising exception instead of printing error on bad YAML

a733e2a3f6d2f3b9607b6c695ef73d3442af2f38 authored over 8 years ago by Greg Wilson <[email protected]>
Merge pull request #61 from fmichonneau/fix-rmd-formatting

Fix Rmd formatting

10443956d680e5c0236a2f95aa85657ee8bcf25e authored over 8 years ago by Greg Wilson <[email protected]>
remove extra line return in knitr output

ff37db08a1a0a1d913e763b93bcb15bc8bde2687 authored over 8 years ago by Francois Michonneau <[email protected]>
use .r instead of .source for code chunks

9bfebc4d0fc6f75598083734b995eb484fffa512 authored over 8 years ago by Francois Michonneau <[email protected]>
Directory for R Markdown files

ea2a2eec3a429d0126589fcf0ded4245f2762aab authored over 8 years ago by Greg Wilson <[email protected]>
Removing legacy PHONY target lesson-single

32f32d338002c882365851c77ffb066f1081f853 authored over 8 years ago by Greg Wilson <[email protected]>
Merge pull request #56 from fmichonneau/rmarkdown-tools

add tools to deal with episodes written in Rmd

3de94867133c1436c6d6dc9ea9565354d5bc2c53 authored over 8 years ago by Greg Wilson <[email protected]>
add tools to deal with episodes written in Rmd

19beaaf0c2de344412c9e0410a592013cd1369fe authored over 8 years ago by Francois Michonneau <[email protected]>
Making nav bar responsive

11b78e9c2ec95d5c3419b2c7690d6efe586a5762 authored over 8 years ago by Greg Wilson <[email protected]>
Tidying up based on first contact with R maintainers.

1. Renaming Ruby file to use underscore in name (consistent with other `bin` scripts).
2. Gene...

600e4a3f3cc4532b83601fc8fbf022dbed419af8 authored over 8 years ago by Greg Wilson <[email protected]>
Preparing for June 2016 release

9c447b8e6ca87637b4ada4a6361c56d06cd8f0f8 authored over 8 years ago by Greg Wilson <[email protected]>
Fixing typo

15331a0242d2f4c7d7442718414ebf9b6a014999 authored over 9 years ago by Greg Wilson <[email protected]>
CSS cataloguing tool

6e037a57288bce7e8f97a11fde9ac8c5bb00fbf4 authored over 9 years ago by Greg Wilson <[email protected]>
Merge pull request #30 from twitwi/master

fix #26: updated bundled deck.js, including the fix on browsercast

d08536623b92371344df774be8218d9bf2d5e869 authored over 9 years ago by Raniere Silva <[email protected]>
fix #26: updated bundled deck.js, including the fix on browsercast

this bundle is used also for browsecast-less presentations
and thus browsercast should not unbin...

8cc34be19c43d5814b2aa09f5e57a08b13f541f6 authored over 9 years ago by Rémi Emonet <[email protected]>
Merge branch 'styles-compatible' into new-style

381ddabbe07ab8ffe63738ba52bc9dabbd7732fd authored over 9 years ago by Raniere Silva <[email protected]>
Merge branch 'style-img-responsive' into new-style

b42f539e36d6adb3460290d7efde7b931e2967d7 authored over 9 years ago by Raniere Silva <[email protected]>
Merge branch 'upgrade-bootstrap' into new-style

bb6f0f209e23365ac5b0ae1c9f853d47e93ee58d authored over 9 years ago by Raniere Silva <[email protected]>
Merge pull request #24 from fmichonneau/merge-badge-classes

consolidate badge classes to swc.css

a3b57313edf793386d3fb7604afeda5f6ad187c3 authored over 9 years ago by Raniere Silva <[email protected]>
Fix path of fonts

0d08b98818d9c2aa0f132a2b98daac2f0b16cb68 authored over 9 years ago by Raniere Silva <[email protected]>
CSS compatible with different versions of Pandoc

e752fadac03ce5c304cc7dd74f2d6c4c8ba457ea authored over 9 years ago by Raniere Silva <[email protected]>
Improve figures

Figures should be centered
and not overflow the screen.

0c3058ba649261a2e4466fec4a4afddcbf1d05c4 authored over 9 years ago by Raniere Silva <[email protected]>
Bootstrap v3.3.4

37d4bcf8ae1679db148dbcb1b88a40fcaaa91fc6 authored over 9 years ago by Raniere Silva <[email protected]>
consolidate badge classes to swc.css

the class removed are unused as we take advantage of classes provided by
Bootstrap instead.

d299916aac1fc6b434c1aba714b4a30c10216d43 authored over 9 years ago by Francois Michonneau <[email protected]>
Merge pull request #18 from r-gaia-cs/styles-card

Add documentation about card class

caa88ff73b2825bd204309d1badd907e6db481ae authored over 9 years ago by Greg Wilson <[email protected]>
Add documentation about card class

f8bd46ea4d1fa340151666a96783b9d98b08eea3 authored over 9 years ago by Raniere Silva <[email protected]>
Merge pull request #17 from r-gaia-cs/style-panels

Better style for challenges

d5769347e78f884545f10c0ee90845481d9d6ca2 authored over 9 years ago by Greg Wilson <[email protected]>
Merge pull request #16 from r-gaia-cs/styles-fix-background

Fix background for lessons

1289f51dc61533e59db79a7a38d3b232eae0d288 authored over 9 years ago by Greg Wilson <[email protected]>
Fix: styles for panel heading

There's a note in
https://github.com/swcarpentry/lesson-template/pull/182
explaining why we need...

32544f55dee077ad2eab44374341a65f15eaba77 authored over 9 years ago by Piotr Banaszkiewicz <[email protected]>
Add Bootstrap theme

This makes some things look nicer (e.g. adds gradients, etc).

5c28510c22732ac470ba83b52359c0c3d2c3f0ea authored over 9 years ago by Piotr Banaszkiewicz <[email protected]>
Fix background for lessons

49ff04f2bb607245d4ea5088fc49a1b6d88a7247 authored over 9 years ago by Raniere Silva <[email protected]>
Merge pull request #12 from fmichonneau/site-update

Update CSS to go with the SWC site template update

e8b726e9ab6ea4736353399d63e15e4e44c03629 authored over 9 years ago by Francois Michonneau <[email protected]>
Merge pull request #10 from pbanaszkiewicz/fix-table-styles

Fix: styles for tables in SQL lessons

843999c02d60843cc0800006482623fe75e397b3 authored over 9 years ago by Raniere Silva <[email protected]>
fix footer for small displays

ec38fb662a24bb43fb1b8f6c2ba4cbc27c96a8d8 authored over 9 years ago by Francois Michonneau <[email protected]>
fix swcarpentry/site#844 reposition button on small displays

5ea8320d21df4ae9ae8ae58fc800db7d0813beb7 authored over 9 years ago by Francois Michonneau <[email protected]>
fix navbar

64d5f75a7655a3cd0b38aec9f93e4145ae663376 authored over 9 years ago by Francois Michonneau <[email protected]>
fix blockquote

26af3ff021dd62d4dca111543c877552fbd23ca3 authored over 9 years ago by Francois Michonneau <[email protected]>
swc.css: Add striped rows to tables

Now the style is matching closely `.table-bordered` from Bootstrap.
I decided to leave the heade...

7e4bc12b3fe9b7364940915ec56b4271b9b53ec1 authored over 9 years ago by Piotr Banaszkiewicz <[email protected]>
Fix: styles for tables in SQL lessons

Previously: table cells had no padding, which caused a visual collapse
(cell content was too clo...

f92d323c65045ede2daf90f19c3a6911d1f767bd authored over 9 years ago by Piotr Banaszkiewicz <[email protected]>
fix #8 (font size for code in headings)

b5354662d3c7434cbde53344e862ea733e02a862 authored over 9 years ago by Francois Michonneau <[email protected]>
fix navbar on smaller displays

50e2d6ef5e80f294d85daa16b729d7a63b946300 authored over 9 years ago by Francois Michonneau <[email protected]>
bump z-index for ribbon

eec35445eb0b4ca6582cdb831ade954a3b32765a authored over 9 years ago by Francois Michonneau <[email protected]>
fix footer

ee623db0bf33f0ccef1a68de62b88b76961170f3 authored over 9 years ago by Francois Michonneau <[email protected]>
fix swcarpentry/styles#4 github ribbon position

3acb5614bafe68b0dfece1b67eac411a9bc95e32 authored over 9 years ago by Francois Michonneau <[email protected]>
Merge github.com:swcarpentry/styles into site-update

a13e7bbfc13455e7953d9222dcde8963f8001a34 authored over 9 years ago by Francois Michonneau <[email protected]>
modify CSS for navbar

def3c13c4f1b006d99ca4debc55828ef2336a3d2 authored over 9 years ago by Francois Michonneau <[email protected]>
fix urls for location of glyphicons

d9e358ea77c29d985e8f33740e37c5710d49b8be authored over 9 years ago by Francois Michonneau <[email protected]>
remove unneeded classes

10a18249931bad7bb2aa1eee395a798d06fe3a50 authored over 9 years ago by Francois Michonneau <[email protected]>
fix class for navbar

7517cc4f89b2336ada65ca5b37f8d3c531ed96a3 authored over 9 years ago by Francois Michonneau <[email protected]>
Merge pull request #6 from fmichonneau/fix-typo

add missing bracket

e8360ae2d1e5b38d805c75151836f46b089c5c4c authored over 9 years ago by Francois Michonneau <[email protected]>
add missing bracket

0e4a3f305ce0d5f8d5d60fc8e5f9b63878982981 authored over 9 years ago by Francois Michonneau <[email protected]>
Merge pull request #3 from fmichonneau/upgrade-bootstrap

Upgrade bootstrap

101aa9243c4ae16302c366796947d08716f5fd7c authored over 9 years ago by Raniere Silva <[email protected]>
Merge github.com:swcarpentry/styles into upgrade-bootstrap

Conflicts:
css/swc-bootstrap.css
css/swc.css

95b0f4c71a9966e920699ab6b023da75228d1f01 authored over 9 years ago by Francois Michonneau <[email protected]>
Merge pull request #5 from swcarpentry/join-site-lesson

Join CSS from site and lessons

ea5a11d1b85589688e75d5d9c839b025720e1fb3 authored over 9 years ago by Raniere Silva <[email protected]>
Merge branch 'site'

fb846e4f28bf814f2cd50ffb1b14f793fd4414a9 authored over 9 years ago by Raniere Silva <[email protected]>
Use unified CSS from site.

As per swcarpentry/lesson-template#140, but only the core CSS
changes.

553f30a1aee93d12b95f7ec4dec2d9dfa6ba725e authored over 9 years ago by James Allen <[email protected]>
Move files (from site) into css

8b766fd3e82348cc04d33f820ad3e135149c0f2b authored over 9 years ago by Raniere Silva <[email protected]>
Merging @r-gaia-cs improvements

668a6a781a5e72fb2ea066f0447b6e7ae09693fa authored over 9 years ago by Greg Wilson <[email protected]>
Small improvements to CSS

- Remove extra space before title of boxes
- Remove background color of boxes when printing
...

bfdec8165f3a0f34d656207b2dca83dd2ef056ff authored over 9 years ago by Raniere Silva <[email protected]>
added some challenge CSS

8ca339ba5c90fbab61f9638645176368af89fee7 authored over 9 years ago by Bill Mills <[email protected]>
Improve callout box

and "learning objectives" box.

b240fc088f1d13b056ffca7de375f4dedf26dc14 authored over 9 years ago by Raniere Silva <[email protected]>
Blockquote margins

2a36b09e0fc611c5bd04e2d273dbd0219795ae93 authored over 9 years ago by Timothée Poisot <[email protected]>