github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop commits

Add swc-releases to _includes/links

Close #217

cd798b9e3ca478601153882bc39fe03043ddd348 authored over 6 years ago by Raniere Silva <[email protected]>

Merge pull request #219 from katrinleinweber/patch-2

Fix source of typo #646

10bce8280f48b73ded13bd5df1946186a47fbaf0 authored over 6 years ago by Raniere Silva <[email protected]>

Fix source of typo #646

ad4cd67d971e426afee178259fe52b62072db0ae authored over 6 years ago by Katrin Leinweber <[email protected]>

fix typos and add context help images

b7cbc90c0fea73a16bd60bee2e4b9d59c965a69d authored over 6 years ago by JasonJWilliamsNY <[email protected]>

add images and 01 episode content

149ec9850be0929ad64d25eb3c24647f9459f030 authored over 6 years ago by JasonJWilliamsNY <[email protected]>

initial commit with index page and some of lesson 01

3d8d864e5672307097ba180b43b7b875ace95086 authored over 6 years ago by JasonJWilliamsNY <[email protected]>

Merge pull request #214 from katrinleinweber/resolve-DOIs-securely

Link DOIs to preferred resolver

bbf3bd9b1751f50ac9b8da7a5e880b1910e88d3e authored over 6 years ago by Raniere Silva <[email protected]>

Link DOIs to preferred resolver

e4dd6164ea3ecd478202c9d341c01b9f599d53e8 authored over 6 years ago by Katrin Leinweber <[email protected]>

Merge pull request #213 from ErinBecker/update-coc

Remove out-of-date CoC language

8f9e76c8fbcab5e0d12971b1c0559c6eb3b5ca27 authored over 6 years ago by Raniere Silva <[email protected]>

Remove out-of-date CoC language

ecc2efa23864894301ee3991f84804f737d07a84 authored over 6 years ago by Erin Becker <[email protected]>

Merge pull request #203 from swcarpentry/fix-svg

fix svg files

e0ade1114622810ee1d4fb8b9a8f00c9fb5dc699 authored over 6 years ago by Raniere Silva <[email protected]>

Fix issue with CSS

34b0d399d6318028ca0496d06f2fa792d24837e5 authored over 6 years ago by Raniere Silva <[email protected]>

Merge pull request #209 from rgaiacs/gh-pages

Related with lesson-example/pull/172

d29296ba5b90bf26804f7a14d3803d03dd02ba7a authored over 6 years ago by Raniere Silva <[email protected]>

Requested changes

d1281913efdd2822675ce7afee5ee7de93c82416 authored over 6 years ago by Andrew Sanchez <[email protected]>

Merge pull request #206 from rgaiacs/gh-pages

Fix broken link for Contact

56a763d44dad80a58f42e6495a620dd8404c4100 authored over 6 years ago by Raniere Silva <[email protected]>

Fix broken link for Contact

a1707b0c1746ea1264af877c60e92cc2e88e8869 authored over 6 years ago by Raniere Silva <[email protected]>

Merge pull request #205 from rgaiacs/gh-pages

Add current year to copyright of workshop footer

0b6b1b448bd217ad499a319900d081e2beef7965 authored over 6 years ago by Raniere Silva <[email protected]>

Add current year to copyright of workshop footer

accf26a0c7a258e08057846778979b13e2d3220a authored over 6 years ago by jcoliver <[email protected]>

Merge pull request #188 from wclose/update_lesson_initialize

Updated lesson_initialize

06854122998bdba5bd9435df4e4fdbf0674ee580 authored over 6 years ago by Raniere Silva <[email protected]>

Merge pull request #202 from rgaiacs/gh-pages

Fix CSS to use .language-X class

e512f444f543b6a3847d8862aa02015d16043955 authored over 6 years ago by Raniere Silva <[email protected]>

fix svg files

b9a00c86e1640565de1c1dc249a2e11a69a923b9 authored over 6 years ago by François Michonneau <[email protected]>

Merge pull request #200 from mawds/commentgenerated

Advise users not to edit .md files generated from .Rmd files

27ead3399fd2b79e8fd23025cb9d57662cbe5fbf authored over 6 years ago by Raniere Silva <[email protected]>

Implement using @naupaka 's suggestions

682e775c3280b324afec8d24edade5c09ecacbd9 authored over 6 years ago by David Mawdsley <[email protected]>

Fix CSS to use .language-X class

6a3a8071f7cbc137e86bb53706cc057fe610a6fb authored over 6 years ago by Raniere Silva <[email protected]>

Insert comment in YAML header advising not to edit

e7b99dad7890e970b7db25c97ac43bbc9ea87c60 authored over 6 years ago by David Mawdsley <[email protected]>

Merge pull request #196 from katrinleinweber/patch-1

secure hyperlinks to pre-empt server-side HTTPS redirects

0e1523ecce8d42dbd1a5f2848f69b86849fe190b authored almost 7 years ago by Raniere Silva <[email protected]>

pre-empt server-side redirects

4f40bac223f6ba4e3a213c8ebb38a406dfbb23c1 authored almost 7 years ago by Katrin Leinweber <[email protected]>

Made minor revision to order of information

Reorganized description of process for contributing to clarify/increase readability

af2df7aafe1cfed8c6064bd8fda1be3edea62304 authored almost 7 years ago by William L. Close <[email protected]>

Made requested revisions to lesson_initialize

Changed the keyword for emailing from 'contact' to 'email' per https://github.com/swcarpentry/st...

55b723add97606b7616549cb443d6366ffc40a8e authored almost 7 years ago by William L. Close <[email protected]>

Fix problem with {% link reference.md %}

0f8afa2d877af4e4ef5618acc2c1f6b0e0bdef28 authored almost 7 years ago by Raniere Silva <[email protected]>

Merge pull request #193 from rgaiacs/gh-pages

Fix bin/lesson_initialize.py

01957e22bf78c20aa3728867d103305d88826164 authored almost 7 years ago by Raniere Silva <[email protected]>

Fix bin/lesson_initialize.py

If _extras/figures.md exists,

$ ./bin/lesson_initialize.py

will return

Warning: _extr...

a1ab182aa4b337d426d12cd69dad2f148b6aba3c authored almost 7 years ago by Raniere Silva <[email protected]>

Copy _extras/figures.md from lesson example

23a98275c50eb254493bf2e0fca5f63822b9d469 authored almost 7 years ago by Raniere Silva <[email protected]>

Port changes from workshop

b68e55dab7f54036c28684258a0fc9d131d5c4f1 authored almost 7 years ago by Raniere Silva <[email protected]>

Port changes from workshop

fcc731bf6c88c41900eba1b72a8638d3e6ab4a0e authored almost 7 years ago by Raniere Silva <[email protected]>

Rename _includes/lc/syllabys.html to _includes/lc/syllabus.html

Close #150

e1a840c90cc7d773705de74dca65a3e5f4536d61 authored almost 7 years ago by Raniere Silva <[email protected]>

Fix usage instruction at bin/workshop_check.py

Close #152.

9259abf17b39c66f5e0912d127f5e4e5f63b8c57 authored almost 7 years ago by Raniere Silva <[email protected]>

Merge pull request #192 from rgaiacs/syntax-highlight

Syntax highlight

1083d36c335bfcd04afeb1cac27aab33db0da496 authored almost 7 years ago by Raniere Silva <[email protected]>

Remove check for all_figures.html now that we are using Javascript

7e835fdcb5914dcac5b401b5f69378904304ae6b authored almost 7 years ago by Raniere Silva <[email protected]>

Fix validation for syntax highlight

a747be0b2a78fa4d66707c3d28268ae6105c731e authored almost 7 years ago by Raniere Silva <[email protected]>

Change bin/chunk-options.R to use .language-r instead of r

1b10e59d6f032b26840239c04681ac73fdd633ea authored almost 7 years ago by Raniere Silva <[email protected]>

Enable syntax highlighting

Based on https://github.com/swcarpentry/lesson-example/pull/144/files

78d37164c9d0a66cfbc2c524468b7f76b3c3c7b4 authored almost 7 years ago by naught101 <[email protected]>

Fix broken link

Close https://github.com/swcarpentry/lesson-example/issues/145.

595602dd74ab7c7623389b236da88b4ae3b9deea authored almost 7 years ago by Raniere Silva <[email protected]>

Updated lesson_initialize

Clarified instructions for using GitHub to contribute, altered link for [issues] to direct to Gi...

8404c00538580d44bbfc868d52b5c7f6923fe5a5 authored almost 7 years ago by William L. Close <[email protected]>

Fix root YAML variable in bin/lesson_initialize.py

Close #186

95644a91f9be4793d084125e5665c5aa50f221c7 authored almost 7 years ago by Raniere Silva <[email protected]>

Fix email as keyword in bin/lesson_check.py

3e332fccbc5e63676dbb7642d9a42eba524f02d6 authored almost 7 years ago by Raniere Silva <[email protected]>

Merge pull request #185 from rgaiacs/178

Adopt email instead of contact as keyword

446d1c2f751e99ae53a3141f04b059053aebc3f9 authored almost 7 years ago by Raniere Silva <[email protected]>

Adopt email instead of contact as keyword

Close #178

76c2d51a9663a4c6c72be94932a519087c5dcf02 authored almost 7 years ago by Raniere Silva <[email protected]>

Merge pull request #184 from rgaiacs/styles-js-load-images

Replace extract_figures.py with Javacript

1082c2863bbad60219a2b6f9377f48f0ecd8c89d authored almost 7 years ago by Raniere Silva <[email protected]>

Replace extract_figures.py with Javacript

Demo at https://github.com/swcarpentry/lesson-example/pull/132/.

47bfe1bdb97f7925ace52ed71aa93ba828c709f7 authored almost 7 years ago by Raniere Silva <[email protected]>

Merge pull request #165 from brandoncurtis/keyboard-keys

add keyboard key style

337a6e8fa1df0a6f611f479be4cc9b1653443925 authored almost 7 years ago by Raniere Silva <[email protected]>

Merge pull request #183 from rgaiacs/gh-pages

Fix concept-maps link

3418441fbeef6d5b3259a7fec1527a57a699c167 authored almost 7 years ago by Raniere Silva <[email protected]>

Fix concept-maps link

Close #176

9fd880cbd00135365645b214b64a022fb581620e authored almost 7 years ago by Raniere Silva <[email protected]>

Merge pull request #182 from rgaiacs/gh-pages

Fix github-importer link

080298e879bc2f237d29cd2579aa0c6127d3a57d authored almost 7 years ago by Raniere Silva <[email protected]>

Fix github-importer link

Close #177

17a345a2585c49459e7b054a913f2ff9885f7c93 authored almost 7 years ago by Raniere Silva <[email protected]>

Merge pull request #181 from rgaiacs/styles-offline

Add "Offline" Capable

a7be7042948191759ed0503a630af16bf926efa7 authored almost 7 years ago by Raniere Silva <[email protected]>

Add "Offline" Capable

This is based on https://github.com/swcarpentry/lesson-example/pull/127/.

5aaa87a47a781367da393720e8a8f0aaedd79b5a authored almost 7 years ago by Raniere Silva <[email protected]>

Merge pull request #174 from IanLee1521/fix-episode-nav-wrapping

Fix episode nav wrapping

5edc669e4aa3bcaf888e33df6233603b7ff56b91 authored about 7 years ago by Raniere Silva <[email protected]>

Pull left / right arrows in episode nav to outside of row

b54dcce0b4c4100713955cc7a5838b624b150326 authored about 7 years ago by Ian Lee <[email protected]>

Converted to `col-xs-*` from `col-md-*` classes for navbar div

By doing this, when a page is heavily zoomed in (e.g. 500%) the navbar
icons stay in the same ro...

d20077aafc2047e24a5e31e80644315d210cf9ca authored about 7 years ago by Ian Lee <[email protected]>

Merge pull request #169 from jsta/patch-1

Load methods package

745e85db872e0b1004e4c0df78b69abcfa75e433 authored about 7 years ago by Raniere Silva <[email protected]>

Load methods package

Building `md` from `Rmd` in a script like this will break if the `methods` package is not called...

961d4ee11a433e6f6d7786da9f0ee85e6f8d0414 authored about 7 years ago by Joseph Stachelek <[email protected]>

use <kbd></kbd> for keyboard keys

SWC uses block inline attribute lists for e.g. code blocks, but I think this HTML tag is much si...

1df4f12e4e570c2bcfc855a3a4a2e0956a1e0bac authored about 7 years ago by Brandon Curtis <[email protected]>

add keyboard key style

b2abd06b565a0dfb858b63b6fd165be9a70beaf5 authored about 7 years ago by Brandon Curtis <[email protected]>

Merge pull request #163 from mawds/sortfigs

Output episode figures in correct order

354a469617bc07bd7dc30dfd27ac18f4bac82e4f authored about 7 years ago by Raniere Silva <[email protected]>

Sort HTML_DST output

2208a4b12fafb3365f912e7ea13e121f930e7d0f authored about 7 years ago by David Mawdsley <[email protected]>

Sort episodes before producing figures

eb1bb0a70a5b344ff5c05b649cb2ee1a885c8599 authored about 7 years ago by David Mawdsley <[email protected]>

Merge pull request #159 from rgaiacs/lc-svg-logo

Add Library Carpentry SVG logo

ba594920485961d5f85096cb213dc042b29f438c authored over 7 years ago by Raniere Silva <[email protected]>

Update Library Carpentry logo

879e4156bb44c268b287e0155f100e7fa804f5da authored over 7 years ago by Raniere Silva <[email protected]>

Add Library Carpentry SVG logo

4b831ad753ccc22b0eda5e1e2985527088cdf934 authored over 7 years ago by Raniere Silva <[email protected]>

Merge pull request #158 from rgaiacs/fix-logo-nav

Fix logo at navbar

1a6efba07862f103be06eacef2f371b8258e2b31 authored over 7 years ago by Raniere Silva <[email protected]>

Fix logo at navbar

by run

~~~
$ find _includes -type f -exec sed -i "s/page.carpentry/site.carpentry/g" {} \;
$ fi...

0ab311b14a3cb46559a41354f56ea6884495b67a authored over 7 years ago by Raniere Silva <[email protected]>

Merge pull request #157 from rgaiacs/155

Unify Library Carpentry logo

8fed5dcced37c6f3133d95377d0c01a20e06ffc7 authored over 7 years ago by Raniere Silva <[email protected]>

Unify Library Carpentry logo

Close #155

6e4e4c45b60d65f0272fe62e779b14c9e8aa3db3 authored over 7 years ago by Raniere Silva <[email protected]>

Merge pull request #156 from jnothman/patch-1

Link LC as for SWC and DC

846245969abce28ad7755f56a061e9892bda367c authored over 7 years ago by Raniere Silva <[email protected]>

Link LC as for SWC and DC

55c2e1b39722e7f0f019620e89c20054a0388b51 authored over 7 years ago by Joel Nothman <[email protected]>

Handler for collaborative_notes

See https://github.com/swcarpentry/workshop-template/issues/410

b08b83dd0f3b847e0a96051797b840eadd0591e5 authored over 7 years ago by Raniere Silva <[email protected]>

Revert "Remove CONDUCT.md since it should be generate by bin/lesson_initialize.py"

This reverts commit 1e56203d492a1a13d86756fb5e9d754ed2cae0f8.

9f34e6e952d0d3ab25df0eef4e65a521d2ba4c88 authored over 7 years ago by Raniere Silva <[email protected]>

Fix bug with Python script

98e4bc69b4b03055125a6f888e08b7d08e5cba67 authored over 7 years ago by Raniere Silva <[email protected]>

Remove CONDUCT.md since it should be generate by bin/lesson_initialize.py

1e56203d492a1a13d86756fb5e9d754ed2cae0f8 authored over 7 years ago by Raniere Silva <[email protected]>

Remove extra link to Library Carpentry

c34c2250009ff00500233ced3377b0735662b93a authored over 7 years ago by Raniere Silva <[email protected]>

Merge pull request #149 from rgaiacs/styles-print

Add all in one lesson build with Javascript

908fff1fc50de4f44bff2b6227816e25e39a3bd3 authored over 7 years ago by Raniere Silva <[email protected]>

Add all in one lesson build with Javascript

3474a5ff1e54a0f9c0a26230814729138f65768a authored over 7 years ago by Raniere Silva <[email protected]>

Merge pull request #148 from rgaiacs/show-challenges

Make challenges and discussion visibles

6951d40bfdf5b51db9d48cd409a37659bb4fd54d authored over 7 years ago by Raniere Silva <[email protected]>

Make challenges and discussion visibles

This is based on
https://github.com/swcarpentry/instructor-training/pull/437/files and
https://g...

6f6cba4dfd9457e8e81a838f485b869dff2b242d authored over 7 years ago by Raniere Silva <[email protected]>

Merge pull request #147 from rgaiacs/update-coc

Updated CONDUCT.md

e4e394bbe2a837d208c8676c035e39d6b4bd3d0d authored over 7 years ago by Raniere Silva <[email protected]>

Updated CONDUCT.md

Rebased of https://github.com/swcarpentry/lesson-example/pull/116/.

Thanks to @tracyteal.

7999654dafe48f74b2d30ddf247e1bfafc3c2684 authored over 7 years ago by Raniere Silva <[email protected]>

Merge pull request #143 from ErinBecker/gh-pages

Suggest template language

895499e6df8747839488bead870e95715b75e106 authored over 7 years ago by Raniere Silva <[email protected]>

Merge pull request #142 from rgaiacs/styles-library-carpentry

Add Library Carpentry to the workshop template

ac2d0d57eac188a4644ec288e89669579baff41c authored over 7 years ago by Raniere Silva <[email protected]>

Merge pull request #146 from fmichonneau/check-version-checkpoint

make sure that checkpoint version is 0.4.0 or higher

468a433c51ec096cdcce2aa0572a6a69bb97dda0 authored over 7 years ago by Raniere Silva <[email protected]>

make sure that checkpoint version is 0.4.0 or higher

53c0a7f2ad7148c775c322fc55f3712ce847dfea authored over 7 years ago by Francois Michonneau <[email protected]>

Merge pull request #145 from fmichonneau/fix-checkpoint

fix swcarpentry/lesson-example#118: use checkpoint::scanForPackages

df9ba8249c6736039fb41b30133f9e8b979a74c8 authored over 7 years ago by Raniere Silva <[email protected]>

fix swcarpentry/lesson-examples#118: use checkpoint::scanForPackages

db363c80dd925450f09f2e1c69382a99057b7568 authored over 7 years ago by Francois Michonneau <[email protected]>

Suggest template language

bc6056f39ff367ffc3fb67597c29a624372a2c8d authored over 7 years ago by ErinBecker <[email protected]>

Add Library Carpentry to the workshop template

Includes @drjwbaker's description of Library Carpentry.

38307ff35b01ef8c1521473676a43742b5f9601a authored over 7 years ago by Raniere Silva <[email protected]>

Merge pull request #139 from rgaiacs/improve-wording

Improve wording on syllabus.html

50d94bd72220ac7ed539ef14f7141669a6d65abd authored over 7 years ago by Raniere Silva <[email protected]>

Improve wording on syllabus.html

As suggested by @gcapes.

12506a4b66016088a5c8582ac6e34ccb2cdb13f3 authored over 7 years ago by Raniere Silva <[email protected]>

Merge pull request #138 from swcarpentry/revert-129-dt-ids

Revert "ensure dt elements have an id set"

bb2b6119d9b60ce099426752af3960e0aa9c205d authored over 7 years ago by Raniere Silva <[email protected]>

Revert "ensure dt elements have an id set"

f994dfbedc0b992a73ae966a21d2c82aaf9c7c25 authored over 7 years ago by Raniere Silva <[email protected]>

Merge pull request #137 from rgaiacs/styles-numbering

Numbering the lessons in the schedule

d68646c5d14daa3e87ccb30ef057851cf7904faf authored over 7 years ago by Raniere Silva <[email protected]>

Ecosyste.ms: OpenCollective

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop