github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop commits

Merge branch 'gh-pages' into gh-pages

48b6ab3ebcbc56eee36ffe1c7c00e6028746fcc5 authored about 6 years ago by Sarah Brown <[email protected]>

edit comment

1ce8540b40f0cd4562b73af47affae84b8bf97d2 authored about 6 years ago by François Michonneau <[email protected]>

refactor to avoid errors when rendering locally

d32a598f5ee2ff3d6f08c921a7ad35300e7181b2 authored about 6 years ago by François Michonneau <[email protected]>

use github metadata to identify branch to use when editing files

feeb525b30a7410595a17e2f5402b335719871c3 authored about 6 years ago by François Michonneau <[email protected]>

spelling corrections using en_US dictionary

71ace0f4b9d840589768d5289815bdb9756f0721 authored about 6 years ago by Trevor Keller <[email protected]>

use quietly to avoid spurrious warnings

41009343e4a27c1a66e8797252a22994f9df8731 authored about 6 years ago by François Michonneau <[email protected]>

install remotes instead of failing if package not available

5c34d896d2683cf259daa3ef96de526281f9a76f authored about 6 years ago by François Michonneau <[email protected]>

Reflect Apple's rebranding

See apple.com/macos

2c90f2b2f33307bdb27cfe3b320816caaebb6bac authored about 6 years ago by Katrin Leinweber <[email protected]>

include base_path where needed

3a82dee0447f439da7524299f3f1c433eb285d62 authored about 6 years ago by François Michonneau <[email protected]>

Merge pull request #345 from maxim-belkin/margin0

Code/callout/prereq/etc blocks: set left and right margins to 0

034e9780249bbca6d3b84614c5aecb43dbd5f93d authored about 6 years ago by Raniere Silva <[email protected]>

make relative_base_path available to syllabus

ab7c1c4b6983583a1c5c9218d660a76669ddc0cf authored about 6 years ago by François Michonneau <[email protected]>

make sure relative_root_path is in scope in the episode navbar

d498f87f2b637332b1d4d787cfff68ca0b33050c authored about 6 years ago by François Michonneau <[email protected]>

use requirements package to find lesson dependencies

52d301e01af3a8866757a5c99dfd7b9e1e6ba64c authored about 6 years ago by François Michonneau <[email protected]>

fix variable names

6592b2e5c9cdeb08f8ba09e984f423095a9cc5ed authored about 6 years ago by François Michonneau <[email protected]>

Clone images instead of creating new ones

4f98e2a755c93fd58a5935a659a5a9d4ff9468ef authored about 6 years ago by Maxim Belkin <[email protected]>

Replace page.root (#310)

* replace page.root with 'base' variable that knows path level

* deal with case of trailing /...

39ed62b9b218242775b043e9eff3e76bb430602d authored about 6 years ago by François Michonneau <[email protected]>

make figures a little larger and higher definition

c9fe2d8c2a8cde408bbd9c75e9bcee22bc16a027 authored about 6 years ago by François Michonneau <[email protected]>

figures.md: fixes and improvements

Pull Request carpentries/styles#330
Closes carpentries/styles#343

1. Fix the script so that all...

df03039fa6395469aede858e873b1b03b6dd3264 authored about 6 years ago by Maxim Belkin <[email protected]>

Set left/right margins to 0

e08eb05e721f3c3675e962cb89ed72c5ff3f6880 authored about 6 years ago by Maxim Belkin <[email protected]>

Adjust spacing of headers

Pull Request: carpentries/styles#327

9af9525887c5374687cd2a0fa88811eb54bef3a2 authored about 6 years ago by Maxim Belkin <[email protected]>

change shell parameter to "$@"

05c23b2ae3604a890df8fa078d20149b0a2af165 authored about 6 years ago by François Michonneau <[email protected]>

update test checking src and dest are provided

5ab6d5b5b05f56890aa8b86c1a164f492c0c674d authored about 6 years ago by François Michonneau <[email protected]>

only knit rmd files to md if they have changed

ec8998275016d80d067f6980192d965d987dd1de authored about 6 years ago by jsta <[email protected]>

.editorconfig: code style guidelines for text editors

Pull Request: carpentries/styles#216

79bf7adfc4f3d419c5fb9295404ccbebdb3f0950 authored about 6 years ago by Katrin Leinweber <[email protected]>

add missing <article> tags

ebc4230414f4e9a519087587439b6256af4aa1d2 authored about 6 years ago by François Michonneau <[email protected]>

upgrade version number

d209595ec580ef5eb2de61bf766da50266898a7b authored about 6 years ago by François Michonneau <[email protected]>

add lesson life cycle stage indicator

37404b3d9e326fd084d30780e2817c5b7873eaa8 authored about 6 years ago by François Michonneau <[email protected]>

lesson.scss: center images

Pull Request: carpentries/styles#323

5e4ca8b76f4030d8cc732bb95939500cc0713728 authored about 6 years ago by Maxim Belkin <[email protected]>

Fix footer and copyright notice

Close carpentries/styles#325

887f484d746c0547478f8da8ae53de4774c7bbea authored about 6 years ago by Raniere Silva <[email protected]>

Merge pull request #340 from tracykteal/calendar

added workshop calendar

fa9d79a971b136abd4326d57b4f7cb338e5f761f authored about 6 years ago by Raniere Silva <[email protected]>

Merge pull request #326 from carpentries/callout-margins

space out callout elements better

a5f509748ff95b0e3fbb370be350fa78befd75bf authored about 6 years ago by Raniere Silva <[email protected]>

use site.github.url only in production

b84e6ac5b787b831c496780d14bcc73242d8e172 authored about 6 years ago by François Michonneau <[email protected]>

avoid warnings and errors around github metadata for local rendering

7e86166e4de20ed225f35d9c6b8d5f885bb922c7 authored about 6 years ago by François Michonneau <[email protected]>

added workshop calendar

56c504729f0bfb3208f1c75912ecf500c540003e authored about 6 years ago by Tracy Teal <[email protected]>

Merge pull request #338 from rgaiacs/336

Fix lesson_initialize.py to initialize new lessons

445392e15315421d1460f7d0765d07a419f50265 authored about 6 years ago by Raniere Silva <[email protected]>

Fix lesson_initialize.py to initialize new lessons

CODE_OF_CONDUCT.md is already at the root of the repository.

c6b61291e98f4921d7379813ab51324fbdf4886f authored about 6 years ago by Raniere Silva <[email protected]>

Merge pull request #334 from carpentries/add-surveys

Add surveys

886bfbea34fd825c8d1dc97dadea8a8740c99a38 authored about 6 years ago by François Michonneau <[email protected]>

[fix #332] add instructor training survey links

e23c81661539319851ed8680a44824cca599042d authored about 6 years ago by François Michonneau <[email protected]>

add LC survey links

4248451ccbf6a7d59ba8d908cabe76a7744b1918 authored about 6 years ago by François Michonneau <[email protected]>

Merge pull request #333 from maxim-belkin/fix-makefile

Makefile: fix typo in clean-rmd rule

35880097d5c41b538f3008fd542772969b5a875c authored over 6 years ago by Raniere Silva <[email protected]>

Makefile: fix typo in clean-rmd rule

b01dd227c382b6e136db7a92c0f014d549e87d02 authored over 6 years ago by Maxim Belkin <[email protected]>

Merge pull request #328 from carpentries/fix-survey

fix survey link variables

e11668d3fdf4827572298890368d77d9a24f3b69 authored over 6 years ago by Raniere Silva <[email protected]>

fix survey link variables

4aa8830594683ac51433d5eb74988f6b5e5bd8dd authored over 6 years ago by François Michonneau <[email protected]>

space out callout elements better

80d6638a0c94abdd20c1e020d5ec5609c28210de authored over 6 years ago by François Michonneau <[email protected]>

restrict to article

09d9cce4be20f0185de8e0ecc7b9e6a5a095284f authored over 6 years ago by François Michonneau <[email protected]>

use 20px margin

cb2346ee3d382434dfe9c66735981379aa82a6ed authored over 6 years ago by François Michonneau <[email protected]>

center images

bcc090d57fda379f68dff8bf1231b6e6f83f2f5a authored over 6 years ago by François Michonneau <[email protected]>

Merge pull request #318 from carpentries/tracykteal-patch-1

added about the discussion stage to the LC description

13a537a25b721c708b14bf2bc525bc6bb85e0f8f authored over 6 years ago by François Michonneau <[email protected]>

Merge branch 'gh-pages' into tracykteal-patch-1

4661f9a17da81038dff734f13ff1e5ff83e21d43 authored over 6 years ago by François Michonneau <[email protected]>

Merge pull request #317 from carpentries/fix-311

[fix carpentries/styles#311] update descriptions of the carpentries

a3831d18e8faef66af18dd9b775d7c6aacb7ef82 authored over 6 years ago by Belinda Weaver <[email protected]>

added about the discussion stage to the LC description

cb60e6bcbec203f47f88f2cc493663fd6a575f78 authored over 6 years ago by Tracy Teal <[email protected]>

[fix carpentries/styles#311] update descriptions of the carpentries

95f65b89624418e85ab17c5158625ac36e5cec35 authored over 6 years ago by François Michonneau <[email protected]>

_config.yml: fix link to the Library Carpentry website

Pull Request: carpentries/styles#313

450a6fc59670d147057e4dcb726a31f47db8119e authored over 6 years ago by Maxim Belkin <[email protected]>

Update Library Carpentry link, resolve #304

d39ad8017a7c173c36906de96f2ddb2763e2a6da authored over 6 years ago by trk <[email protected]>

lesson_check.py: check YAML headers in Rmd episodes

Check that Rmd episode files include `source: Rmd`

Fixes carpentries/styles#273

d2b83c815a32c3e7eba006f579dc4ba37bc4dfcc authored over 6 years ago by François Michonneau <[email protected]>

Merge pull request #303 from katrinleinweber/patch-3

links.md: add links to carpentries' lessons overview pages

2b8a946380a903bf930e25c1ae6de8c0e61e0835 authored over 6 years ago by Raniere Silva <[email protected]>

Sort alphabetically

05ee737be5982c18397e9184840c594487fab3d4 authored over 6 years ago by Katrin Leinweber <[email protected]>

Link to lessons (closes swcarpentry/r-novice-inflammation/#371)

e8b4a1c542e08a44427199a72d6dcc0f30bbd7b6 authored over 6 years ago by Katrin Leinweber <[email protected]>

bump version number

0ff9a92c5571a1f6630d981a40c80b814860010a authored over 6 years ago by François Michonneau <[email protected]>

[fix carpentries/styles#300] add CODE_OF_CONDUCT.md to root

4755a6d767fafa5424eea4689f5ba69ada1142f9 authored over 6 years ago by François Michonneau <[email protected]>

switch contact email to [email protected]

ba909ccb91bb7fe956339cac595f7321bf0d9353 authored over 6 years ago by François Michonneau <[email protected]>

Merge branch 'gh-pages' of github.com:carpentries/styles into gh-pages

67513ef3c691ce8e501c4caabc02c1009a280c71 authored over 6 years ago by François Michonneau <[email protected]>

bump version in footer

13802da2518bfe365daadf531563ec9fa2a253f7 authored over 6 years ago by François Michonneau <[email protected]>

Add 'cp' (Carpentry) as a new lesson type

* Add 'cp' (Carpentry) as a lesson type (for instructor training)
* Explain lesson type abbrevi...

bb9b1d35a3ed4c0b8d777c495fd9056bc7792aec authored over 6 years ago by François Michonneau <[email protected]>

[fix carpentries/styles#281] add missing include links.md

1223100c617db5f392a26f3b088440b9b5c03694 authored over 6 years ago by François Michonneau <[email protected]>

fix URL

e650b89dd8f30ddb0322e3258a4f186586836ae6 authored over 6 years ago by François Michonneau <[email protected]>

Merge pull request #295 from carpentries/update-urls

update URLs to reflect consolidation to carpentries organization

90df6d30a6f6c2651bf77a6d2bec741a7069fca9 authored over 6 years ago by François Michonneau <[email protected]>

update URLs to reflect consolidation to carpentries organization

305f7b41867bfdc3228d6cd1d54514f309cfdf87 authored over 6 years ago by François Michonneau <[email protected]>

Merge pull request #284 from maxim-belkin/fix-links-md

Add links.md to files in boilerplate

2a938b0918d897245b7fc5dea9f34c5adc39e0b4 authored over 6 years ago by Raniere Silva <[email protected]>

Merge pull request #243 from alee/docker

Makefile: add docker-serve target

6099b78c26e226db0f6ac5b18d2d65b44f28dd18 authored over 6 years ago by François Michonneau <[email protected]>

Merge pull request #285 from maxim-belkin/fix-conduct

Move CODE_OF_CONDUCT.md to boilerplate

b488e64bd4cb7160d36149dfabdfa2f8ddef42bf authored over 6 years ago by Raniere Silva <[email protected]>

fix typos and edit text

e3a2d1f7a28894aff5f404f8592a948d001d10ac authored over 6 years ago by Jason Williams <[email protected]>

Add CODE_OF_CONDUCT.md to boilerplate

add555b71888549bf0f0a27f4c5e0182e42b603e authored over 6 years ago by Maxim Belkin <[email protected]>

Remove CODE_OF_CONDUCT.md

396a3995ecf38f59e81e22b3e97b8262b6690959 authored over 6 years ago by Maxim Belkin <[email protected]>

Merge pull request #282 from mr-c/patch-1

remove permalink that breaks asset includes

999ce618bd8136b2c3264e448363e7dc8469ec5c authored over 6 years ago by Raniere Silva <[email protected]>

Merge pull request #286 from mzc9/gitIgnoreChanges

gitIgnore for R

546ffa606edc35150b6fe3bf41f00b9aed3daa6b authored over 6 years ago by Raniere Silva <[email protected]>

gitIgnore for R

2f6182138df84a16f3698ff131eeba2f0139cac9 authored over 6 years ago by mzc9 <[email protected]>

Add several FIXMEs to the template episode

8249bf61ef270817c9851979eff79ba17adcd7b4 authored over 6 years ago by Maxim Belkin <[email protected]>

Remove extra blank lines

73683e43349a878eed60477039b1b37d9d3b6811 authored over 6 years ago by Maxim Belkin <[email protected]>

Add links.md to files in boilerplate

5d9e94328016e8c95d63b71105b0e37dd20a391d authored over 6 years ago by Maxim Belkin <[email protected]>

Merge pull request #1 from swcarpentry/gh-pages

_config.yml: no 'mailto' in 'email'

23596e7060e032da4a846b69099b55001d99fb98 authored over 6 years ago by Sarah Brown <[email protected]>

fix typos and add clarifying text to boilerplate

4352fbc3cdaf38cb211fe2dc727aa235263fdb59 authored over 6 years ago by Sarah Brown <[email protected]>

_config.yml: no 'mailto' in 'email'

Closes swcarpentry/styles#283

`site.email` is used as:

_includes/lesson_footer.html: ...

f03403bda153b55319f4221ecceb482b17a6a88d authored over 6 years ago by Michael R. Crusoe <[email protected]>

remove permalink that breaks asset includes

Will also match https://raw.githubusercontent.com/swcarpentry/lesson-example/gh-pages/CONDUCT.md

986a6beb7b03c1dfee0247ea3bbc5036689afb8d authored over 6 years ago by Michael R. Crusoe <[email protected]>

update formatting

57b3627383f32091dbc13b7e7a6ef94283bd39ff authored over 6 years ago by Jason Williams <[email protected]>

Merge pull request #280 from katrinleinweber/patch-3

Rename CoC file to align with GitHub's Community Profile expectation

0e0f2bf4e396419a46760d0add6af054cd1c512c authored over 6 years ago by Raniere Silva <[email protected]>

Upgrade repo's Community Profile

See https://help.github.com/articles/about-community-profiles-for-public-repositories/.

5d78abcdfe74bef35f3b5184ef2ae0a458de8658 authored over 6 years ago by Katrin Leinweber <[email protected]>

Increase version to v9.5.0

2a7326fbbf7dd9c6f98c5b27ab45faa862060a52 authored over 6 years ago by Raniere Silva <[email protected]>

Merge pull request #279 from rgaiacs/lesson-check

Fix lesson_check.py

c001ec8ab41ec54e3eea3e2ae44bf16c65761783 authored over 6 years ago by Raniere Silva <[email protected]>

Fix lesson_check.py

f8f4cffad78b61a8d5a0199f128ce8bf7bd1aecd authored over 6 years ago by Raniere Silva <[email protected]>

Merge pull request #278 from maxim-belkin/fix264

Run lesson-fixme from within lesson-check

4a85f2c12ad7c3c6b73e9369024f065b1aaa6279 authored over 6 years ago by Raniere Silva <[email protected]>

Run lesson-fixme from within lesson-check

8f9af3d9ff33f1ef605ecf3a451ef2b03213e797 authored over 6 years ago by Maxim Belkin <[email protected]>

Update Makefile

c0be5ccc5d02ca042a86b266f91955afe6bda119 authored over 6 years ago by Raniere Silva <[email protected]>

Merge pull request #277 from rgaiacs/bin-python3

Change shebang to Python3

9f4023adc148b56644331e8d5de4e588f3d28ebf authored over 6 years ago by Raniere Silva <[email protected]>

Change shebang to Python3

Close swcarpentry/styles#271

149e18fc021b97da2479a075aca18a5c6b613050 authored over 6 years ago by Raniere Silva <[email protected]>

Merge pull request #276 from rgaiacs/274

Make Jekyll ignore .Rproj

0802ec9a7e97f888e0e967b8f291ad28b703de50 authored over 6 years ago by Raniere Silva <[email protected]>

Make Jekyll ignore .Rproj

Port of https://github.com/swcarpentry/r-novice-inflammation/commit/9da857efb16d7351127f2d5c46fc...

57f2069e7240294a0c4eb9abbef67273db19fd47 authored over 6 years ago by Raniere Silva <[email protected]>

Merge pull request #275 from rgaiacs/travis-build

Improve .travis.yml to build the lesson

9126d2c1d963629340e6998aa40fdf6ed71cdaa3 authored over 6 years ago by Raniere Silva <[email protected]>

Improve .travis.yml to build the lesson

ee84f54cdfdc0375bcbd6e32dc5bf17c9bf1d5a8 authored over 6 years ago by Raniere Silva <[email protected]>

Merge pull request #272 from rgaiacs/remove-root-and-layout

Remove root and layout from YAML for boilerplate

8e1b1065902133759c87975961abf75def5f7993 authored over 6 years ago by Raniere Silva <[email protected]>

Ecosyste.ms: OpenCollective

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop