github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop commits

DNS --> URL

64173f1384f1f5ffe9afb84083c27485b252c537 authored almost 6 years ago by Erin Becker <[email protected]>

login with DNS

Change login instructions to use DNS instead of IP address, to fit in with existing workshop adm...

f20198ab35d5e7c08f2d991d631fee2b42535264 authored almost 6 years ago by Erin Becker <[email protected]>

Merge pull request #26 from ErinBecker/master

Ggplot code to use vcf data

2d3ac65760ec8f588a32882d739a3440ed89eb37 authored almost 6 years ago by Erin Becker <[email protected]>

fix facet_grid call

e335f8ada307caabceac520ca2edc5c821b3cce7 authored almost 6 years ago by Erin Becker <[email protected]>

use latest aio.md file

ca40e7483bd83065754dec4706fae69fe93f9b03 authored almost 6 years ago by François Michonneau <[email protected]>

edits based on Naupaka's comments

5d21cd717d41188fb19e6916e89a726f59f620da authored almost 6 years ago by Erin Becker <[email protected]>

change examples to use vcf data

36e369f648e880ab9db39bc079c86113de15deaf authored almost 6 years ago by Erin Becker <[email protected]>

update URL in travis badge

55d2011cdefa66c70569f99f7b398a8fd82cf9b9 authored almost 6 years ago by François Michonneau <[email protected]>

Merge pull request #7 from carpentrieslab/master

Merge pull request #23 from ErinBecker/master

59d927549dc7bbed9540d6b5e89d8fa8c2ff3625 authored almost 6 years ago by Erin Becker <[email protected]>

Merge pull request #23 from ErinBecker/master

Make compatible with AMI

7b4688f3406a8fa948f55d014ba2437b9f745b7e authored almost 6 years ago by Erin Becker <[email protected]>

read in data file from figshare

38de824318809a329a0ccb96aa76d3d91edfbfe3 authored almost 6 years ago by Erin Becker <[email protected]>

formatting fixes

f40ef6fa75cf43802a4a96c2bd2549fff166132e authored almost 6 years ago by Erin Becker <[email protected]>

move data files to FigShare and AMI

8781afcc04d8a88e1947b5ab238d7fa3b92e200f authored almost 6 years ago by Erin Becker <[email protected]>

remove data files

3dea5ac0afefe43365e1c108d4f0e52f39135d9b authored almost 6 years ago by Erin Becker <[email protected]>

update paths

e41164d54e33fd9dce2cc2ee95cd2c48498927ad authored almost 6 years ago by Erin Becker <[email protected]>

Merge pull request #6 from carpentrieslab/master

update my fork

edc2e9f479bc830f1505e75696c140b7241fa0f1 authored almost 6 years ago by Erin Becker <[email protected]>

Merge pull request #19 from ErinBecker/master

Read through and minor revisions

e2c5d7f7116b4b1b67dc80cce0cf6ab921121d42 authored almost 6 years ago by Erin Becker <[email protected]>

changes based on Naupaka's review

b02de8a673cd2e5b59297bf04e8bbc5e86f1af7f authored almost 6 years ago by Erin Becker <[email protected]>

edits based on Naupaka's review

de42b2a3509eebb997efb1b5808c7a9fa810069c authored almost 6 years ago by Erin Becker <[email protected]>

remove knitr from rendered lesson

ad6bb060df7e17557405911508607662086c2a18 authored almost 6 years ago by Erin Becker <[email protected]>

cleanup to episode 3

a50dc4bb157e9fb17d547f036fe89423b954d0b8 authored almost 6 years ago by Erin Becker <[email protected]>

some cleanup to episode 2

22e7e7d18a323c168dafa25b6c9cdaf8e48f358a authored almost 6 years ago by Erin Becker <[email protected]>

cleanup on episode 1

737800b78f2d2b8c9f51ebdaa7d752d16916a009 authored almost 6 years ago by Erin Becker <[email protected]>

Merge pull request #5 from carpentrieslab/master

update my fork

cae46b4284ba5ce3bb2217be7029ee3b29930f03 authored almost 6 years ago by Erin Becker <[email protected]>

fix typo

f55ca6c44ccf8b6c9702d7d463b1851d35ff6501 authored almost 6 years ago by François Michonneau <[email protected]>

fix typo

9bd6a27eda68975c5b1c9b8cfbcf6ff89e6f5b55 authored almost 6 years ago by François Michonneau <[email protected]>

Merge pull request #12 from ErinBecker/master

General cleanup of episodes

1e67d4e3d3cd6a26406bd89ae399491427b534c4 authored almost 6 years ago by Erin Becker <[email protected]>

add missing words

d526435ffd1b7170dc2dce4235ff9f76052cdc67 authored almost 6 years ago by Erin Becker <[email protected]>

general cleanup

45433196ad231309c934a9663b3dd8ef2250beaa authored almost 6 years ago by Erin Becker <[email protected]>

general cleanup

94f201d247144ace2429c1961052cae878ad43f9 authored almost 6 years ago by Erin Becker <[email protected]>

general cleanup

28e988214d77f150074ac51dc34f9cb8a634f562 authored almost 6 years ago by Erin Becker <[email protected]>

reduce output

2e2f6fad5b43b23488d74de86a12fd9b6b245b96 authored almost 6 years ago by Erin Becker <[email protected]>

Merge pull request #4 from carpentrieslab/master

update my fork

a91eb253a18fb7921161981a6ec426c1daa78fb5 authored almost 6 years ago by Erin Becker <[email protected]>

Merge pull request #10 from ErinBecker/add-vcf-to-episodes

Convert exercises to use tidy vcf

2dd68bafc18805560e4124bf466dea6ae34db58e authored almost 6 years ago by Erin Becker <[email protected]>

Merge pull request #9 from ErinBecker/incorporate-vcf

Convert tidy vcf file to use vcf output from full length files

78c82395ff22844f5c2229b12446c68720232376 authored almost 6 years ago by Erin Becker <[email protected]>

start adding vcf examples to ggplot

49f4b594e701331f06651ea6f3324a53cadd9fa3 authored almost 6 years ago by Erin Becker <[email protected]>

convert examples to vcf dplyr episode

1a1de283c95e62e292b661e9f5d7ebf3588ff689 authored almost 6 years ago by Erin Becker <[email protected]>

update most examples to use vcf

4ee3c6be68d615d946fa5c21bf6cf22473490ad1 authored almost 6 years ago by Erin Becker <[email protected]>

change examples to tidy vcf

ffc841adedb55e0f3d836baf3e8e2c9d2c9d7324 authored almost 6 years ago by Erin Becker <[email protected]>

rebuild tidy vcf using full vcf output

e05a6635ee791d90c8ade7797b9b682764cfd89d authored almost 6 years ago by Erin Becker <[email protected]>

Merge pull request #3 from carpentrieslab/master

update my fork

a3ffd4523f09a2613a3397bc2feaced0fe64369b authored almost 6 years ago by Erin Becker <[email protected]>

Merge pull request #7 from jananiravi/patch-1

Update 02-r-basics.Rmd; typos/minor edits

95cd43fc6e3874cba9b5e56782e17c78417be301 authored almost 6 years ago by Erin Becker <[email protected]>

clarify mode, class, type

30e1cd935d39e489c3926113032c6d3d8930ef9a authored almost 6 years ago by Erin Becker <[email protected]>

e.g., --> e.g.

8aa9fe77b637e61a40dc0b7750e59bffb98f098c authored almost 6 years ago by Erin Becker <[email protected]>

Update 02-r-basics.Rmd

7ac66a52f559eda42bcfce64ecf457cc4716aa62 authored almost 6 years ago by Erin Becker <[email protected]>

Merge pull request #8 from ErinBecker/master

add tidy vcf data and script

4d851585bdb8aa488ed518d97d020dcbd44e6956 authored almost 6 years ago by Erin Becker <[email protected]>

add tidy vcf

7b441fce85c09b969ba7d5f91932410122d53698 authored almost 6 years ago by Erin Becker <[email protected]>

Merge pull request #2 from carpentrieslab/master

Merge pull request #6 from ErinBecker/master

9ab1ceedd64e74dba36a0df918de5e01aeaab195 authored almost 6 years ago by Erin Becker <[email protected]>

Update 02-r-basics.Rmd

- some minor typos/edits
- didn't any core content, yet

af7957874aa1fd06b8b11912fa7c04d01af7a46e authored almost 6 years ago by Janani Ravi <[email protected]>

Merge pull request #6 from ErinBecker/master

bring in other episodes

7a3bbbbfee8c19841ebdc5da995bda10f891d71b authored almost 6 years ago by Naupaka Zimmerman <[email protected]>

format challenges

d6e719a133637b87349548eac4bdc761aadb4a1f authored almost 6 years ago by Erin Becker <[email protected]>

add Kryztof's content

9ee95b6413e8de99c54d866418ed58b9cea6a84a authored almost 6 years ago by Erin Becker <[email protected]>

preserve config formatting

0e729142ac2ab0963f17412bc36a303a02c6196a authored almost 6 years ago by Erin Becker <[email protected]>

update text to match new code

54cfbe07c0dd01108a4e27f5d9f2fca14b3581d0 authored almost 6 years ago by Erin Becker <[email protected]>

update remaining content

46d67fe9956af342904dde214368944a2ff09597 authored almost 6 years ago by Erin Becker <[email protected]>

start updating plots

25a0b79a59262c2758bae1e8b698f7bff36627ba authored almost 6 years ago by Erin Becker <[email protected]>

reduce cog load by not teaching two graphics systems

e71599c47360d0132702aaab6f609ed5c632c65a authored almost 6 years ago by Erin Becker <[email protected]>

remove files included in remote template

4c23570ba6c58797a23c59f01e672915e5814a9d authored almost 6 years ago by Erin Becker <[email protected]>

update code in 04-dplyr for new data

78aa96cfb95e21dfbeae165df9f36c48f71a9495 authored almost 6 years ago by Erin Becker <[email protected]>

start updating code and exercises

f0a0930146508fcbb0f5f6f4cef9ec28d6a671a5 authored almost 6 years ago by Erin Becker <[email protected]>

put data in data directory

f2ef37d60d2124447d1e244021c6ef35f9d2c873 authored almost 6 years ago by Erin Becker <[email protected]>

add other template files

a6b5bb277b02c85c3193b4a600ec88929ef55526 authored almost 6 years ago by Erin Becker <[email protected]>

add _layouts

b2cfe40c7026189c04e8d07644f387b3027b539a authored almost 6 years ago by Erin Becker <[email protected]>

add _includes

3b349f6c6a05a5bce54565307bd6bb6e9dbe4ba7 authored almost 6 years ago by Erin Becker <[email protected]>

remove unused files

ca8e90dd0eb2cfb757f24cb1f4d041f276e53942 authored almost 6 years ago by Erin Becker <[email protected]>

convert to lesson template

26950bfb7256fe405c2311f1fc77b58ad57a7678 authored almost 6 years ago by Erin Becker <[email protected]>

rename episodes for new order

27f50422a8c2a1e5285544424cb06f35f3727069 authored almost 6 years ago by Erin Becker <[email protected]>

remove more duplicate content

fde246457484f890a26cd957f9287a3325055355 authored almost 6 years ago by Erin Becker <[email protected]>

start removing duplicate content

96fb50c58430767574a90df61a4aeea9af4eb5c7 authored almost 6 years ago by Erin Becker <[email protected]>

migrate content from https://github.com/emhart/stanford-r-genomics

8b01bf4008e21ac35b032f75d81d322e5d2b39ce authored almost 6 years ago by Erin Becker <[email protected]>

edits for docker image and addition of new sample files

507fd9befd51f7f4cd4e5452cdb89ab64ee915bb authored almost 6 years ago by Jason Williams <[email protected]>

add section on contributing in README

c1a8cf95626fee52d1718b447088dc90599e8241 authored over 6 years ago by François Michonneau <[email protected]>

use correct folder

8b20af783b7a9a40819353981dd832f67b239c27 authored over 6 years ago by François Michonneau <[email protected]>

try to delete the .gitignore

9174bc0aefe46483ce2203aaa3aa3f07834301f0 authored over 6 years ago by François Michonneau <[email protected]>

add README file

44bba8f5d2f9cfb0d8d2a066fde748ec74c9a083 authored over 6 years ago by François Michonneau <[email protected]>

update deployment scripts

97e7be7e6bd480e4fad9f2bf41304f83e07d5818 authored over 6 years ago by François Michonneau <[email protected]>

Use Rmd + Travis (#5)

* move episode files

* move image files

* [fix #2] convert episodes to Rmd

* fix setup ...

e6a78cce172e3311270b462ce7dbf5f3c5516b5e authored over 6 years ago by François Michonneau <[email protected]>

Merge pull request #4 from carpentrieslab/switch-remote-theme

Switch to remote theme

0ff53b9922523cd6fdb825d5c16223318c8299bb authored over 6 years ago by François Michonneau <[email protected]>

Merge branch 'master' into switch-remote-theme

0cd5a1c0b586087bc5ef19fabab322a86ba300a1 authored over 6 years ago by François Michonneau <[email protected]>

switch to using remote theme

aa2c9c634895041613b8a5e9e48fe70531ef6584 authored over 6 years ago by François Michonneau <[email protected]>

finish episode 3 and reorganize

fd16bbe08ef493ca779022358d1e2114070dc02f authored over 6 years ago by Jason Williams <[email protected]>

fix typos and edit text

6526cadc586be65bfec23729aa90fe84149a535b authored over 6 years ago by Jason Williams <[email protected]>

update formatting

3a8530031eed48d5614f26eed8c5bd622d8c5894 authored over 6 years ago by Jason Williams <[email protected]>

complete episode 3 up to ordering factors

8432afa6c9f5b047f50bdadbbdcce3a62accb2ca authored over 6 years ago by JasonJWilliamsNY <[email protected]>

complete coercion section

1658c407f87e85a988e613cf84faf9037ebb26cb authored over 6 years ago by Jason Williams <[email protected]>

get up to coercing factors

e0ad9970460d6b6fe16bd96c15226333beddb0ad authored over 6 years ago by Jason Williams <[email protected]>

add some bonus material

b03b30f89632847719fd1a8d4e9cbed52f3c3496 authored over 6 years ago by Jason Williams <[email protected]>

begin lesson 3

5f1c513d0acd527fa2a1331934a5784e17d6354a authored over 6 years ago by JasonJWilliamsNY <[email protected]>

add images

e2cf98bc5f88a190db1d4dbb128c72c216d42f22 authored over 6 years ago by JasonJWilliamsNY <[email protected]>

finish episode 2 add 3

e36989a63848e7341e29c4e0d0cdb370f79aead9 authored over 6 years ago by JasonJWilliamsNY <[email protected]>

intermeidate up to logical indexing

f5cf54077b1a5d147cb5893228d650a5bb7df369 authored over 6 years ago by JasonJWilliamsNY <[email protected]>

complete up to math with objects

1c8ce34adeceded474e47d3683582d89553c3bd0 authored over 6 years ago by JasonJWilliamsNY <[email protected]>

update screenshots and instructions for Rstudio Server 1.1

7db187afc6af70d2641d935a8063de749bc99255 authored over 6 years ago by JasonJWilliamsNY <[email protected]>

update screenshots and instructions for Rstudio Server 1.1

8626181ce61ec9f311af38ad6a166a80b0eda559 authored over 6 years ago by JasonJWilliamsNY <[email protected]>

push changes to episode 2

b8996a22c5e0b60ec08e8dd6972f10ff36c91fc6 authored over 6 years ago by Jason Williams <[email protected]>

intermediate commit

5d9b2bb91830cdd502d8c0188f64e0b23990e2a9 authored over 6 years ago by JasonJWilliamsNY <[email protected]>

fix typos and add context help images

089aae0305798260dcbda082ef6d85afc9032b30 authored over 6 years ago by JasonJWilliamsNY <[email protected]>

add images and 01 episode content

35c280fb2f6bb9956ff6bed19d259e7c579c51e0 authored over 6 years ago by JasonJWilliamsNY <[email protected]>

initial commit with index page and some of lesson 01

bc826abda62727f1b6ec87d3ea1c5103a13427ee authored over 6 years ago by JasonJWilliamsNY <[email protected]>

Remove gh-variables from links.md

a9553db43d56a13209fb6d4e7d5209e414e25fb6 authored over 6 years ago by Maxim Belkin <[email protected]>

Ecosyste.ms: OpenCollective

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop