github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop commits

Merge pull request #27 from datacarpentry/IP-to-DNS

login with DNS

5d23021621a82554fa56e61263dd2f3fe04b2c1e authored almost 3 years ago by Naupaka Zimmerman <[email protected]>

Merge branch 'main' into IP-to-DNS

4bad79532d8920736e28654005fedf1c6225db5d authored almost 3 years ago by Naupaka Zimmerman <[email protected]>

Merge pull request #82 from sstevens2/patch-1

Possible typo on t-test

f5c45fcfd93e2d8326a92fb29c219b4e78e37915 authored almost 3 years ago by Jason Williams <[email protected]>

Merge pull request #83 from sstevens2/patch-2

Updating typo in subsetting challenge

6be0c2394c447799a36e314c9fcb7a81a50b0c8d authored almost 3 years ago by Jason Williams <[email protected]>

Merge pull request #87 from datacarpentry/iss_86

The path to the .csv file was in correct. Fix #86

707e519d099ee61572830b111f4a462b98558076 authored almost 3 years ago by Jason Williams <[email protected]>

Merge branch 'main' into iss_86

79f6054482203af8ad152620b26d77b0b237e835 authored almost 3 years ago by Jason Williams <[email protected]>

Merge pull request #101 from JasonJWilliamsNY/master

Adding exercise solutions files in case they are needed

c01902acffaa7c20b348e59785fc4851613fbcfa authored over 3 years ago by Jason Williams <[email protected]>

Update how the testing of the biocmanager package is explained

7d4c37626e138c634b1d7655d9d2a7b99fdafeca authored over 3 years ago by Naupaka Zimmerman <[email protected]>

Update time estimates for bioconductor lesson

51db31776410fba3c2284cf00cf2e5e4582c17d9 authored over 3 years ago by Naupaka Zimmerman <[email protected]>

Merge branch 'main' of github.com:datacarpentry/genomics-r-intro into vcfr-bioconductor

cdee352b8066f4dd26dbce21f97307f75b04c481 authored over 3 years ago by Naupaka Zimmerman <[email protected]>

Add screenshots for bioconductor lesson

520ff91c8e7274dadf06496911ca291710be7600 authored over 3 years ago by Naupaka Zimmerman <[email protected]>

Merge pull request #102 from ytakemon/dplyr_update

Dplyr update

27a777c909f266617086944a23e70e3c6a90079d authored over 3 years ago by Krzysztof Poterlowicz <[email protected]>

First pass of bioconductor lesson

f353928974b8ea9b7745a7d6b4ba72f6f08d8346 authored over 3 years ago by Naupaka Zimmerman <[email protected]>

resolve conflict

2ea02edbff11e19ec57bf5e1d6420af15fe61838 authored over 3 years ago by ytakemon <[email protected]>

fixed exercise

dc31c7430019b71434891f3eb0f3798de2296706 authored over 3 years ago by ytakemon <[email protected]>

Merge branch 'datacarpentry:main' into master

ac96e571bfc67b5fd53576e97fc151ffd484e4e0 authored over 3 years ago by Jason Williams <[email protected]>

Merge pull request #99 from fmichonneau/update-tools

update tooling

af54b623f789dd8c7e92a8f3df987bd38f578300 authored over 3 years ago by Yuka Takemon <[email protected]>

Merge pull request #96 from ytakemon/dplyr_update

Updates for compatibility with R-4.0 and dplyr 1.0.0

23b8214446e2a36822bafa230b2afb8fe4df7026 authored over 3 years ago by Krzysztof Poterlowicz <[email protected]>

add extra data files

636ae32c5c6b6e3c2ce06a9b7d251ef8a12270f4 authored over 3 years ago by Jason Williams <[email protected]>

Update _episodes_rmd/04-dplyr.Rmd

e48329617aeb89b516d083c5c9adc8020912a6e1 authored over 3 years ago by Yuka Takemon <[email protected]>

Update _episodes_rmd/04-dplyr.Rmd

c48fa534bcf22deef2777dcfd9a9fa6bca064ccd authored over 3 years ago by Yuka Takemon <[email protected]>

Merge pull request #93 from JasonJWilliamsNY/master

update Introducing R and RStudio IDE episode to R 4.0 and RStudio 1.3…

202b128d87d5b2611a591d5c5a7d5a5582f262cf authored over 3 years ago by Krzysztof Poterlowicz <[email protected]>

Fixed answer to exercise

The output should now show the correct columns.

3ef3443ae2052fb107f73a6373a76f8c6dc84b12 authored over 3 years ago by Yuka Takemon <[email protected]>

This fixes #61 and now consistently uses the term .

aca856a6c2d8ccc11b806a6083e09e51299a9c9a authored over 3 years ago by ytakemon <[email protected]>

fix bug

a2e712a19b213ef2437bf6f03355c88bebfb67d2 authored over 3 years ago by François Michonneau <[email protected]>

update to latest tools

64d9c4a5203e836edaeb76aefb92a02e452e34e9 authored over 3 years ago by François Michonneau <[email protected]>

update github action

076cb4b4c3bd818d88c34cbf99743d00972119c4 authored over 3 years ago by François Michonneau <[email protected]>

remove stringsasfactors flag for hidden purl chunk

6f48b5d3ca5b09f5d8d3f22aa83bd3e6ecba1e1a authored over 3 years ago by Jason Williams <[email protected]>

update episode 3 for R 4.0

f5c8bb06006610b2294485ac4f909c0a330959e7 authored over 3 years ago by Jason Williams <[email protected]>

adding count

2e8eedaab38a9894727b4e39d6e1f5bea5dee011 authored over 3 years ago by ytakemon <[email protected]>

fix slice

a34afc9c7544cd64610dbcc781888502bac32a3e authored over 3 years ago by ytakemon <[email protected]>

updates for R-4.0

8fff4f52edace9126228e95363a5b9f1ff3781bc authored over 3 years ago by ytakemon <[email protected]>

Start to draft structure of bioconductor episode

cc79c463817af8215fc478e2db7f36f74f2015ab authored over 3 years ago by Naupaka Zimmerman <[email protected]>

Updates for compatibility with R-4.0 and dplyr 1.0.0

29585f0cc32cff9e3cf4b667c87e3376e17be413 authored almost 4 years ago by ytakemon <[email protected]>

Create new lesson file as copy

7649acadc0aba7392fe0cdbde45279c109eae936 authored almost 4 years ago by Naupaka Zimmerman <[email protected]>

Renaming Master branch as Main branch

1ed93ff137a78523176bab97117190bf1b24a2ba authored almost 4 years ago by Yuka Takemon <[email protected]>

add missing parenthesis

37c38148a86285b71e89c3a298428dc8934e4a9a authored almost 4 years ago by François Michonneau <[email protected]>

switch to common deploy gha

853df3fafc134468c48fac3cea3413bc706acf90 authored almost 4 years ago by François Michonneau <[email protected]>

update Introducing R and RStudio IDE episode to R 4.0 and RStudio 1.3.1093

d1f070dba95e90a0602bcd5037da59789bc24e2c authored almost 4 years ago by Jason Williams <[email protected]>

update Makefile

adba75ba3ca27b1856c75eb333f5807d10443b46 authored almost 4 years ago by François Michonneau <[email protected]>

update scripts in bin folder

e97f1d8d4c7b2ade2527ee658fac2627ec394f0c authored almost 4 years ago by François Michonneau <[email protected]>

use GitHub Actions

aa8ba3aa59cbb963264e21bb2e2d9ac154d26abb authored almost 4 years ago by François Michonneau <[email protected]>

add deploy

19f57d963bf28addc609862b76f2b3e32969fd41 authored almost 4 years ago by François Michonneau <[email protected]>

use R release

011980ff4e6b7c4be12198bd4e6e128163c5853e authored about 4 years ago by François Michonneau <[email protected]>

test deploy keys only from master

a0fc98848b7b3d2efe2dbc283ea7281e36ed1fd6 authored about 4 years ago by François Michonneau <[email protected]>

The path to the .csv file was in correct. Fix #86

c3ba6f168ae000cd7388198a52dd29a215e9c9a4 authored about 4 years ago by ytakemon <[email protected]>

Updating typo in subsetting challenge

55a511c71b7e9f6839ebc5a3077d493119923953 authored about 4 years ago by Sarah Stevens <[email protected]>

Possible typo on t-test

791b5529ae793fdf1c56dcf93c5e3a5726f8e5b3 authored about 4 years ago by Sarah Stevens <[email protected]>

last challenge rendering strangely (#80)

Co-authored-by: Sarah Stevens <[email protected]>

1623e318dee481e17076a477bb3314d573c1c19b authored about 4 years ago by Sarah Stevens <[email protected]>

Merge pull request #58 from mfernandes61/patch-1

Update 02-r-basics.Rmd

46fbb23784ee837f12ed24cb2570f41d6f7465de authored over 4 years ago by Yuka Takemon <[email protected]>

Merge pull request #63 from msaul/patch-1

Add integer division to list of mathematical operations

c7797a33da6ec100c68caf8498956a5faadb5a8e authored over 4 years ago by Yuka Takemon <[email protected]>

Merge pull request #69 from tdido/master

Fixed links in contributing guidelines

a5a9f81d46371fb52adc0c9c1f43689920374f79 authored over 4 years ago by Yuka Takemon <[email protected]>

Merge pull request #72 from tuckvoon/master

Grammar Error - Index Intro

9a4fce2a1e45ac1554fa7b9600bb1fae07be4d5d authored over 4 years ago by Yuka Takemon <[email protected]>

Merge pull request #71 from samnooij/patch-2

Correct typing error

6458f72be5bd48dd85b1f4f93938374213842762 authored over 4 years ago by Yuka Takemon <[email protected]>

Merge pull request #67 from adityabandla/patch-1

Changed head to glimpse

4958857640b37087ea5d8440fb0a291272c29910 authored over 4 years ago by Yuka Takemon <[email protected]>

Merge pull request #65 from sstevens2/sstevens2-patch-2

small grammar fix

c0b354ffc57f1bd729b8431cbb3afb9fb867d3b3 authored over 4 years ago by Yuka Takemon <[email protected]>

Merge pull request #64 from sstevens2/sstevens2-patch-1

Fixing link to dplyr package

c8f4b44a0ca505551133f0ea629b79189012029b authored over 4 years ago by Yuka Takemon <[email protected]>

fix typo

f37be59f054e71fe5a0d47239de585f7d641cb0d authored over 4 years ago by François Michonneau <[email protected]>

remove install steps as they are taken care during lesson building

196609df972fecfb1031923b3fb4086dd882188e authored over 4 years ago by François Michonneau <[email protected]>

don't use requirements package

955a245728d814adcb5bc76e23f67d104941e48c authored over 4 years ago by François Michonneau <[email protected]>

try again

a39a961120bb3fdfa6a2af1733a8036dfc8d4b6e authored over 4 years ago by François Michonneau <[email protected]>

use newer tic syntax

4a9d0f1eb02239f21b4f053cedc1ccac3b5e9f5f authored over 4 years ago by François Michonneau <[email protected]>

add missing args

a54fcf4690baf6a12555ae7479ed9ff0c43d42ff authored over 4 years ago by François Michonneau <[email protected]>

use correct ruby version when installing bundler

681d020eee385055bd212f2517acdbc5f6db00f0 authored over 4 years ago by François Michonneau <[email protected]>

install bundler instead of jekyll

da13e16db9a03df6afc30437e2124795daacf167 authored over 4 years ago by François Michonneau <[email protected]>

use same Ruby version as github pages

41524c39f407cb5799f2edfdd31ca84a63036d9b authored over 4 years ago by François Michonneau <[email protected]>

attempt ruby env

53698ff61bc0e45403e8451adeae0bebc23c59cd authored over 4 years ago by François Michonneau <[email protected]>

fix path name

756b45d7c99aa4586c6b0f5da6d7d2e25e4d3116 authored over 4 years ago by François Michonneau <[email protected]>

run bundle install

9e98816a6432afa74380eb219b3a46d721b8d880 authored over 4 years ago by François Michonneau <[email protected]>

try to use check_jekyll_links

9fb0d0b1c97ecfcf1df642772f96c947e6b6aaca authored over 4 years ago by François Michonneau <[email protected]>

there is no DESCRIPTION for this repo

f19c1494b80896a715722e7c107cc58cc697d81b authored over 4 years ago by François Michonneau <[email protected]>

another test

e542e3d491580663a1a699131cc64b637f3ffe97 authored over 4 years ago by François Michonneau <[email protected]>

defer script sourcing

abd7a7751a86f0dad90b080aa2d02bed73346d71 authored over 4 years ago by François Michonneau <[email protected]>

install additional packages

cd4b7e300f838b5119af5effde86496e05de68cc authored over 4 years ago by François Michonneau <[email protected]>

update CI

fefb5ccfffb6eadf9a898c5f303abe2fd98fd692 authored over 4 years ago by François Michonneau <[email protected]>

fix link

31d5f70da1af3910df98903c0fad37ac613e097d authored over 4 years ago by François Michonneau <[email protected]>

fix link to package; remove broken link

1b1d2e64a4781fc0c148504cb91a440b1c1c9d14 authored over 4 years ago by LiNk-NY <[email protected]>

update questions and keypoints for clarity

8b803234b8a717291641effbb4d54f9454523535 authored over 4 years ago by LiNk-NY <[email protected]>

Grammar Error - Index Intro

Corrected grammar error "employee" to "employ".

0275db6a7189b4a806b84949ee36b7afe1115bf6 authored almost 5 years ago by Tuck-Voon How <[email protected]>

Correct typing error

file extension ".Rproj" was missing a 'p'

630820b35031616e335ecda3f1b957ad82cdfb18 authored almost 5 years ago by samnooij <[email protected]>

Fixed links in contributing guidelines (fixes datacarpentry/genomics-r-intro#49)

e8ce142601b6ab7f3658687e3b420e11c859518a authored about 5 years ago by Tomás Di Domenico <[email protected]>

Changed head to glimpse

I feel glimpse is more relevant here as opposed to head and keeps the entire code within the tid...

0349688162e06f3e920caaf052e8113a90c20129 authored about 5 years ago by Aditya Bandla <[email protected]>

small grammar fix

3d5e3e7bf96ba86e288369c6d3ca3d58912b9bf8 authored about 5 years ago by Sarah Stevens <[email protected]>

Fixing link to dplyr package

e2f4f2a69cdbc45b7590c9f186452880c04e054d authored about 5 years ago by Sarah Stevens <[email protected]>

Add integer division

To the list of mathematical and functional operations on objects, add the operation of integer d...

93ee094f54f0909eb2e15b42b7dc8c99a93fc5d1 authored about 5 years ago by Michael C. Saul <[email protected]>

Update 02-r-basics.Rmd

In "Adding to, ...existing vectors" section an 'of' was missing - hopefully putting it in will
...

72d8db4617dcf00ad96caa57790efe996207f290 authored over 5 years ago by Mark Fernandes <[email protected]>

Revert "clean up dplyr lesson + add challenges"

This reverts commit af3b5d7dde67c4a8095be09b7179827b6a452773.

67901d30f13e02bb1657e8bd99cb917c62aceb82 authored over 5 years ago by François Michonneau <[email protected]>

Canonicalize CRAN links (#37)

75361bdf4b7436ee2b6059b1847e463f2d7ae528 authored over 5 years ago by Katrin Leinweber <[email protected]>

clean up dplyr lesson + add challenges

af3b5d7dde67c4a8095be09b7179827b6a452773 authored over 5 years ago by François Michonneau <[email protected]>

use single square brackets

1f775c8dc459104757eef9b552ce1e78d3f5a988 authored over 5 years ago by François Michonneau <[email protected]>

update links to spreadsheets

* introduce here package

https://github.com/jennybc/here_here

This makes transitions acros...

42a86c8fc31e44e55331e588d9bf5cefa9ae730d authored over 5 years ago by Janani Ravi <[email protected]>

fix typos

9d802e666dc57cf0719789a6e05d7ab957a0a9fc authored over 5 years ago by François Michonneau <[email protected]>

fix broken link

75b33b2c5336bd26c30d72e5fe74a070bd901c3d authored over 5 years ago by François Michonneau <[email protected]>

[fix #43] work around hadley/requirements#11

c1e019b352651def8318f3041cf6835de4d9789f authored over 5 years ago by François Michonneau <[email protected]>

fix URL

while `/setup` works, the preferred way is setup.html to allow for offline use of the website

43cbb3af907279b097c75d69d5d0f79930de1e84 authored over 5 years ago by François Michonneau <[email protected]>

Merge pull request #34 from jananiravi/patch-2

edit setup URL

8546605620fe1723f57ee378bf6cdfa074717f26 authored over 5 years ago by Erin Becker <[email protected]>

edit setup URL

thanks to @ErinBecker & @maneesha

9a625e2c8b9f395ac47b219b7f7516a4d6ce4e7d authored over 5 years ago by Janani Ravi <[email protected]>

remove dc from recommendations

cc: @tracykteal

72e1fd8bacd94e35605cb3ff9582bc4598b29213 authored over 5 years ago by François Michonneau <[email protected]>

Merge pull request #28 from maneesha/patch-1

moves lesson to alpha

1052f5fafd0a2d5adb8fe967bbd366de8b1f0429 authored over 5 years ago by Erin Becker <[email protected]>

moves lesson to alpha

6717c35f16fa0fae1365afb1222f0dc753875891 authored over 5 years ago by maneesha sane <[email protected]>

Ecosyste.ms: OpenCollective

github.com/Open-Science-Community-Saudi-Arabia/sFDA-Carpentries-Workshop