Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/ome/omero-guide-fiji


https://github.com/ome/omero-guide-fiji

Add explanation cf JMs comment, fix the version of change to jar

ec4d987c27440b48e103500a68168e1776178568 authored almost 5 years ago by Petr Walczysko <[email protected]>
Update install instructions - no zip and unzip

a9363ccfdaffa565604392a08e570712b37aac59 authored almost 5 years ago by Petr Walczysko <[email protected]>
set target user name

278c92d5322672baaa5c9752544f563dd9b11f6a authored almost 5 years ago by Jean-Marie Burel <[email protected]>
remove 2

5ba3f17f5575ada46c873c540c683f44a2e3233b authored almost 5 years ago by Jean-Marie Burel <[email protected]>
Update practical/groovy/idr0021.groovy

Co-Authored-By: pwalczysko <[email protected]>

6f087118e9990622a51cb63a90f312b815864486 authored almost 5 years ago by jean-marie burel <[email protected]>
remove insight since it is now a jar

8d507846b1f3bf1066aa3c816139103f73a99ebe authored almost 5 years ago by Jean-Marie Burel <[email protected]>
use dialog to collect credentials

52de26c57f5610b1b313870d845c7540046ad955 authored almost 5 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #76 from jburel/ilastik

Ilastik

574fca6b1914b35f516bccd2f3011a93949d561a authored almost 5 years ago by jean-marie burel <[email protected]>
Merge pull request #69 from jburel/import-local-file

import local file

fec9265531fee3c432a2f3d54f0d4bf8d4f818cf authored almost 5 years ago by jean-marie burel <[email protected]>
remove hardcoded var

bcd81563469b7a3b0a6b21384069a79bf2dce192 authored almost 5 years ago by Jean-Marie Burel <[email protected]>
fix annotation

2f72f27ea041b4d55d8fafaad5026c91cf1a5ea7 authored almost 5 years ago by Jean-Marie Burel <[email protected]>
remove user name and password

d3ce3b6307733457f577ab62bce1d4f460088b78 authored almost 5 years ago by Jean-Marie Burel <[email protected]>
add comment

20879f285e075a83a1780e0f8ad4b91df034bf89 authored almost 5 years ago by Jean-Marie Burel <[email protected]>
analyse using ilastik

72ad2d83aa872d06de37c950b0d609e2aa2524f5 authored almost 5 years ago by Jean-Marie Burel <[email protected]>
replace outreach by workshop

70bf0efa3398c346cbe1e4a01ecc324d635380de authored almost 5 years ago by Jean-Marie Burel <[email protected]>
remove unsupported output

7c68caf4be6ed70845140943dabf9c3af7af57bf authored about 5 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #1 from pwalczysko/macro-notebook

Macro notebook

f9e3c373462b3413b78f798c20d52af4ac82b5a5 authored about 5 years ago by jean-marie burel <[email protected]>
edit

c136ede0c69682b2bfc0e70dfff83dddb83aaa2e authored about 5 years ago by Jean-Marie Burel <[email protected]>
Add macro example

917bcd1a81a3b4a35b29cb4cb5c46c6f9d9fa2c4 authored about 5 years ago by Petr Walczysko <[email protected]>
Add workflow, correct a typo in another

91bbb78886be6873cf59e1b14237531dbc0cd6ec authored about 5 years ago by Petr Walczysko <[email protected]>
Add explanation about the recorded macro saving and attaching

678949a6e4706ba615928e0c3f477a7b6e0446db authored about 5 years ago by Petr Walczysko <[email protected]>
replace outreach by workshop

fa1d8be6a001c2c5b48658e1f760e126f7ddba42 authored about 5 years ago by Jean-Marie Burel <[email protected]>
load all annotations linked to the dataset

c9693b96adffd8a21916d8f79063c9b7aaaa519e authored about 5 years ago by Jean-Marie Burel <[email protected]>
delete file

7138ad2163012406eadbe03b2bfd36c282d0c17f authored about 5 years ago by Jean-Marie Burel <[email protected]>
add clarification

3dad7540f027757f82acacf60831db7d5bdb1d29 authored about 5 years ago by Jean-Marie Burel <[email protected]>
delete file after upload

b9756512a67f2eee7bd2de87b76b95560bcf92bb authored about 5 years ago by Jean-Marie Burel <[email protected]>
add save option

33b218e5062fe7671f3477f93793e53113cedc7b authored about 5 years ago by Jean-Marie Burel <[email protected]>
add option to select macro

5620baa78d78f7f63294d563d422a53d78f236da authored about 5 years ago by Jean-Marie Burel <[email protected]>
save image if new

95f8bf72da31245eadbf4c0a9769d5c2dd3e62b8 authored about 5 years ago by Jean-Marie Burel <[email protected]>
add doc

e449e0ad3993c8bdddf124fbdd326fe5f32a1ccf authored about 5 years ago by Jean-Marie Burel <[email protected]>
simplify notebook

d37294dfa2b972474d0d5037f6e9cf8c6d8bc0e4 authored about 5 years ago by Jean-Marie Burel <[email protected]>
Save the results/rois if any

d2f04aafd38ec880c0c012f8a1c9c125f2ed0d05 authored about 5 years ago by Jean-Marie Burel <[email protected]>
re-organise notebook

96512e54587e7128b0d4b24f63e7d6ccae12cbaa authored about 5 years ago by Jean-Marie Burel <[email protected]>
save results and rois

e75928d8f4d0f30d7602f245434491fe436b3052 authored about 5 years ago by Jean-Marie Burel <[email protected]>
remove todo

8fdfda9a4e302d71fc78432351b2ebf369b08fd4 authored about 5 years ago by Jean-Marie Burel <[email protected]>
save output

5dd4903a65a7625fffbe743684786de891247458 authored about 5 years ago by Jean-Marie Burel <[email protected]>
save results

5bc49116b9af0cc85577f1c24dca0862b6e2ca4d authored about 5 years ago by Jean-Marie Burel <[email protected]>
clean up

856cf9bb01dc4d5760087c2b6aefce729c9164b6 authored over 5 years ago by Jean-Marie Burel <[email protected]>
improve message

6824705a7f33d1ebc50b72e53a7f15711d810124 authored over 5 years ago by Jean-Marie Burel <[email protected]>
re-organise connection part and add some text

51f06f8437f271000bcae2842b4b3bc3260d7b06 authored over 5 years ago by Jean-Marie Burel <[email protected]>
Update Fiji/crop_image.ipynb

Co-Authored-By: Mark Carroll <[email protected]>

a2c54ad422ed43e3ec31ce934c048ff17c5a9702 authored over 5 years ago by jean-marie burel <[email protected]>
split collection of info and clean up

a45173ef01448d9860c754e386a68530ed13415e authored over 5 years ago by Jean-Marie Burel <[email protected]>
clean up

6e549f2d130ddf53741c35dc14d33c7fe0d039c7 authored over 5 years ago by Jean-Marie Burel <[email protected]>
add example on how to run macro linked to dataset

7bee63751f3bc4addcd8f301cd8dcba931d4c18f authored over 5 years ago by Jean-Marie Burel <[email protected]>
add init value

5016226735b3c556375438652aabf7218ac8f84e authored over 5 years ago by Jean-Marie Burel <[email protected]>
collect credentials

2e7fd3c10dbe6edac6e6b60fe80ab0f2845b7fff authored over 5 years ago by Jean-Marie Burel <[email protected]>
add groovy notebook

f076c911c8996907514ce004fa9c58d3af005c50 authored over 5 years ago by Jean-Marie Burel <[email protected]>
add info

d9ac1db64bd4e56d92c1d06a535b1126ae82fedd authored over 5 years ago by Jean-Marie Burel <[email protected]>
check link in travis

314a1f07741f7a2c14d4870250f5d41e89344dbf authored over 5 years ago by Jean-Marie Burel <[email protected]>
fix numbering and display of text

c5b41404852f9ab45712718c7e92c9185276d038 authored over 5 years ago by Jean-Marie Burel <[email protected]>
add fiji steps

0d527f20d7fb6c59f0dcd71df81d1feb955513e5 authored over 5 years ago by Jean-Marie Burel <[email protected]>
update project name

52f34e110cb61e3719a4f0981ef3553c5e253fd2 authored over 5 years ago by Jean-Marie Burel <[email protected]>
Initial commit

3e7e0749dbd3644f6070b0e4ac3e806b93d87a24 authored over 5 years ago by jean-marie burel <[email protected]>
change name of the dataset

786229cee794d6a1176b33afb85710e9f6663b12 authored over 5 years ago by Jean-Marie Burel <[email protected]>
import local file

1baa03134414701787513c223b554bdf8015138d authored over 5 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #59 from jburel/exercises

Exercises

08a0ec70f704fcf76570c2729083ab24d63240c1 authored almost 6 years ago by jean-marie burel <[email protected]>
add extra line

ea42f7ba10f99bcee02d678239106b67590859f1 authored almost 6 years ago by jean-marie burel <[email protected]>
add message

d13f23c3fb8896bb071fb1d32f5c8e1af8603610 authored almost 6 years ago by Jean-Marie Burel <[email protected]>
Add import-paths as csv and a simple bulk.yml for training

4746da78dbf5ce383a84492748cf5da92b70ef62 authored almost 6 years ago by pwalczysko <[email protected]>
minor edit

e448fda12a056ef41ba2438e7a87dbe27013f764 authored almost 6 years ago by Jean-Marie Burel <[email protected]>
add Done message

7d868e5fc1d5e444e71ea5ed437555beb807fbb4 authored almost 6 years ago by Jean-Marie Burel <[email protected]>
use stringbuilder

f2e9ab626abce2ae9a56097bb5c805f606dc7838 authored almost 6 years ago by Jean-Marie Burel <[email protected]>
use stringbuilder

a4637579f6124d726463519a3d80627f8e7ea708 authored almost 6 years ago by Jean-Marie Burel <[email protected]>
use stringBuilder and fix name of cropped image

e440b10c461f23ebcb88d5972e6034034a3ef7e7 authored almost 6 years ago by Jean-Marie Burel <[email protected]>
update doc

a5ddbfa25660f18117c4b67dbeef8eba681e22a9 authored almost 6 years ago by Jean-Marie Burel <[email protected]>
example with map annotation

2e23edbc59c1944f07b1a7a15b49169574015a60 authored almost 6 years ago by Jean-Marie Burel <[email protected]>
use int instead of String

fb912c719b4003c70fe460837aedf5a583ef7cb4 authored almost 6 years ago by Jean-Marie Burel <[email protected]>
Fix text and make crop bigger

d1d7bdcea347d37c64c1156d1eee9d1c3c3404a7 authored almost 6 years ago by Jean-Marie Burel <[email protected]>
use tmp file to substract background

2c7a44f5925f1d7ec27bbf7c4eeea6a9cc86d05b authored almost 6 years ago by Jean-Marie Burel <[email protected]>
use tmp file

dacafe8ce4041ee145eebdc44d35711072831844 authored almost 6 years ago by Jean-Marie Burel <[email protected]>
remove whitespace

4d6377354bab8cbb9f8d63ec09417420242198f1 authored almost 6 years ago by Jean-Marie Burel <[email protected]>
add crop example

0dd2c307f352de5d641784e3f728a79f1f19345a authored almost 6 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #50 from jburel/remove-white

Remove white

be8bb8577226597d3511b73ee16b4dda65b99023 authored about 6 years ago by jean-marie burel <[email protected]>
Fix issue when saving data

5da04472302f98a7acf37b75a194c7503b8246ea authored about 6 years ago by Jean-Marie Burel <[email protected]>
Make sure to close all the windows

f0918767b59de7b86ea7ab24fb3b50b14f9dcd58 authored about 6 years ago by Jean-Marie Burel <[email protected]>
Add Label

828714d67e2ce0a1c278b2719fd1f6390afda470 authored about 6 years ago by Jean-Marie Burel <[email protected]>
Remove white

f422555ab4a7acc681cc2663900876206cc0a7eb authored about 6 years ago by Jean-Marie Burel <[email protected]>
Remove white

ebee3c27531207d7956245b3d55f21952156574d authored about 6 years ago by Jean-Marie Burel <[email protected]>
Fix columns error

7f8c5309e516e3ad079c373ba20a539813072d6c authored about 6 years ago by Jean-Marie Burel <[email protected]>
Use columns length

4f12d0755cd2a7d921df787322faf041a5a831f8 authored about 6 years ago by Jean-Marie Burel <[email protected]>
Add "white" attribute

9efc4c3eec0427f78b3a9c68d7914a588b450b0a authored about 6 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #30 from jburel/idr0021

Idr0021

fe3c2d5be69e9b65a6ec7f6a92daf6e370b02bbd authored over 6 years ago by jean-marie burel <[email protected]>
Fix problem with name and index

9273ce48b6baa1e329053bf9366a66e4a68ffaff authored over 6 years ago by Jean-Marie Burel <[email protected]>
Add channel index to table and CSV

1d8f1a43e28f03f5c03f7192a07453739c5b41da authored over 6 years ago by Jean-Marie Burel <[email protected]>
Multiply by 100 value due to a limitation in Parade

4e9cc0df47eeecfccf027ba52d9375f06c354c86 authored over 6 years ago by Jean-Marie Burel <[email protected]>
Open the image using the Hyperstack view

bbd8a242ac35e98e903db65ed358dbb5b71e45dd authored over 6 years ago by Jean-Marie Burel <[email protected]>
Use Hyperstack view to open the image

df203e4e9279dc0c1780c3ded0336e23cec17f94 authored over 6 years ago by Jean-Marie Burel <[email protected]>
Merge remote-tracking branch 'origin/master' into space

499360e23fe3bef273dd8a0140f6d6b72b11960e authored over 6 years ago by Jean-Marie Burel <[email protected]>
Fix doc

af30d3ac628f54420dbdcd1cbfa6a0ea9038eefe authored over 6 years ago by Jean-Marie Burel <[email protected]>
Fix typo in method name

42880a84c271d34b3006838a45bf04a1b76c5d81 authored over 6 years ago by Jean-Marie Burel <[email protected]>
Update Description

2623452f991b919c0e79b4e8d2b7fff4c3ebbed8 authored over 6 years ago by Jean-Marie Burel <[email protected]>
Remove changes added by mistake

f4d3ca0d148120a7fac3f28c35d0bc00eb5b612c authored over 6 years ago by Jean-Marie Burel <[email protected]>
Add extra space

99384a23cef29355dea6ee64a1948b0d97844bf6 authored over 6 years ago by Jean-Marie Burel <[email protected]>
Remove print

8faae1dd499784ab8ff91b4d507ebcfc8b0e122b authored over 6 years ago by Jean-Marie Burel <[email protected]>
Add extra space

7ba2390874b36b1b99a4f123b30ae4ba03e0a65c authored over 6 years ago by Jean-Marie Burel <[email protected]>
Add extra space

c4d38f6054b8d0c8b2c3608fbbea0765891bfe79 authored over 6 years ago by Jean-Marie Burel <[email protected]>
Remove print statement

5ccca7165660545425a35fda09b18c57a7124935 authored over 6 years ago by Jean-Marie Burel <[email protected]>
One more space for windowless

2763cfbbf01ebf9f237224901a0a0354316fe1b0 authored over 6 years ago by pwalczysko <[email protected]>
Add space

50304e78df26afd03b961a14a79a8f1433d62df7 authored over 6 years ago by Jean-Marie Burel <[email protected]>
Add space

05029f88aa6603135cd94f3986324f6ddbefaaeb authored over 6 years ago by Jean-Marie Burel <[email protected]>