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github.com/ome/omero-guide-fiji


https://github.com/ome/omero-guide-fiji

fix IDR number

7492a84b5064341980db3cdb68e6786d89576a8f authored about 4 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #17 from jburel/remove_travis

Remove travis

f73affd219f06a8964421b0ab5dcbbdbc082ccf4 authored about 4 years ago by jean-marie burel <[email protected]>
remove travis

9886a6c4cf1eae020d4ffb312e4de1fd165ffb41 authored about 4 years ago by Jean-Marie Burel <[email protected]>
add badges

991344c1ee789c076ad0b965ab313d6f8af0b129 authored about 4 years ago by Jean-Marie Burel <[email protected]>
add template

f6d286cf31eb1130b0bb9c35632902713cfff561 authored about 4 years ago by Jean-Marie Burel <[email protected]>
add badge to PR

935aa8588e9d126852aa700aa504a99dc70264d7 authored about 4 years ago by jean-marie burel <[email protected]>
Create repo2docker.yml

Build using GH actions

cc8ea3a015bf6a539caf8e53d4f1a471abf60c5e authored about 4 years ago by jean-marie burel <[email protected]>
Merge pull request #16 from jburel/adjust_port

adjust port if websocket is used

8aa6e86a94ce40b56697858b7f34da8dff4fa1fd authored about 4 years ago by jean-marie burel <[email protected]>
adjust port if websocket is used

7aa54c8c6cfb792e4e7ca2e1c0c544c7f381f48b authored about 4 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #14 from mtbc/Insight-v5.5.14

Insight v5.5.14 is now released.

6ac056cae4bf520aad8cb9b9ab67ff79de0a7352 authored about 4 years ago by jean-marie burel <[email protected]>
Merge pull request #2 from pwalczysko/fix-link

Fix links to idr

344a619b27f49f74dc100eb54c69a29460c3eece authored about 4 years ago by Mark Carroll <[email protected]>
Fix links to idr

272f8f58527164036548d10b0b134fb6eaa4d25e authored about 4 years ago by Petr Walczysko <[email protected]>
Insight v5.5.14 is now released.

81cedf312c575af4070ed6408b1cf523661e809e authored about 4 years ago by Mark Carroll <[email protected]>
change version

fe698da86b8075101616a3377a5f93fc72fa18c8 authored over 4 years ago by Jean-Marie Burel <[email protected]>
add entry for 0.2.0

be4e289057456981e9120aceed1ab7b348a1ad19 authored over 4 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #13 from jburel/notebook

Notebook

1ea257463b0b138f0ce6f94b329c8a1618a63dfb authored over 4 years ago by jean-marie burel <[email protected]>
fix name of method

dd7b7a5cea96d024daac20c0a4380892b453912a authored over 4 years ago by Jean-Marie Burel <[email protected]>
update doc

bc38680556a7cde8a61dc8d39f1a0f6c52bc2b97 authored over 4 years ago by Jean-Marie Burel <[email protected]>
add notebook running particles analysis

48112b522354847e2945dddf48906c8ef692ac9c authored over 4 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #12 from jburel/cleaning

cleaning

dddfd192d90f465036e7c15d42256ca190167b67 authored over 4 years ago by jean-marie burel <[email protected]>
fix formatting

bd8a5f08e782c97563db66df55bca4a17700ee39 authored over 4 years ago by Jean-Marie Burel <[email protected]>
Update docs/headless_notebook.rst

Co-authored-by: pwalczysko <[email protected]>

65282a13ad87135d5a3df5c58aeb26434a74121a authored over 4 years ago by jean-marie burel <[email protected]>
add link to notebook

f7f759a6d12ec2416474a6d3658ab1676d836756 authored over 4 years ago by Jean-Marie Burel <[email protected]>
add contribute section

f9ab102bec58ca50352a2d36ba87653e5ad62966 authored over 4 years ago by Jean-Marie Burel <[email protected]>
adjust display to match other guides

552b4b3016a95a3dab09cb5627926d042c639c3b authored over 4 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #10 from jburel/python_ij_review

Python ij review

38eba42e1f5f82c80f215eaac9d18ea4a434106c authored over 4 years ago by jean-marie burel <[email protected]>
Update docs/imagej_python.rst

Co-authored-by: pwalczysko <[email protected]>

e35b874ad7cbe0c9a236e4bb5352033881a80a69 authored over 4 years ago by jean-marie burel <[email protected]>
Update docs/imagej_python.rst

Co-authored-by: pwalczysko <[email protected]>

7fea9f7b930f423c3d7e132186aa4bdd082855fc authored over 4 years ago by jean-marie burel <[email protected]>
Update docs/imagej_python.rst

Co-authored-by: pwalczysko <[email protected]>

7eac057adb17ba308c655bcce4fa3d2ffb012da2 authored over 4 years ago by jean-marie burel <[email protected]>
Update docs/imagej_python.rst

Co-authored-by: pwalczysko <[email protected]>

eec34757443917236b4ed8bfa1f734ab2144253b authored over 4 years ago by jean-marie burel <[email protected]>
Update docs/imagej_python.rst

Co-authored-by: pwalczysko <[email protected]>

43edafc7135b5be4913169837fec60525779be1c authored over 4 years ago by jean-marie burel <[email protected]>
add link to doc

d0ba58ca2f3a2892acc7fe615a8d586687f2d48c authored over 4 years ago by Jean-Marie Burel <[email protected]>
adjust note

c436659cd2b811515e38c7eca0af942f1c971969 authored over 4 years ago by Jean-Marie Burel <[email protected]>
clarify step for option1

0c83a47944447b901b93ecb1fb507fb5d345d376 authored over 4 years ago by Jean-Marie Burel <[email protected]>
move the sentence

f1e8fde3d176f15d4d34ca0155abd2aa3bd34123 authored over 4 years ago by Jean-Marie Burel <[email protected]>
remove headless flag

5c9b9f1f4fb70559453a0c6c158f244d03be5eed authored over 4 years ago by Jean-Marie Burel <[email protected]>
adjust layout

e5f9976b3625ed2d6c187aa81ab10436fa5a63fc authored over 4 years ago by Jean-Marie Burel <[email protected]>
reshuffle GUI/deskopt part

2c9ff4e2fa3c612032ca12031a4c8e47624261c3 authored over 4 years ago by Jean-Marie Burel <[email protected]>
clarify steps

648d75ca648ac3555ac729329beb61b8b6328b0e authored over 4 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #8 from jburel/links

Links

10e95f953803387c76f4980645fc57d216d917cd authored over 4 years ago by jean-marie burel <[email protected]>
update image and display

947d918bdd290039e33f77f636c9cf4a9a592ce3 authored over 4 years ago by Jean-Marie Burel <[email protected]>
move paragraph

8e7304d6804770f17c5434ac6f9c0fb299a50e4d authored over 4 years ago by Jean-Marie Burel <[email protected]>
add missing image

73aff350d35d71fc847401882cf02c37721fb091 authored over 4 years ago by Jean-Marie Burel <[email protected]>
fix url

aac7bb481e90e2fcd8b86b2e41800b17aeb8e626 authored over 4 years ago by Jean-Marie Burel <[email protected]>
Update docs/imagej_python.rst

Co-authored-by: pwalczysko <[email protected]>

bde25f597e0fc4c451a043e2587acccdf06c013e authored over 4 years ago by jean-marie burel <[email protected]>
add checks in travis

a0d9430fa435dcc4775b11842df9e11d644b6d95 authored over 4 years ago by Jean-Marie Burel <[email protected]>
flake8

6910931747983ecbd2b3f9c1bf4ccbabc9e650bf authored over 4 years ago by Jean-Marie Burel <[email protected]>
add options

52b95e0da62b5248f5b0ba027a48a2379e07ea86 authored over 4 years ago by Jean-Marie Burel <[email protected]>
add steps

e70c599fef3d3180ec076bf8b1b2fa4dd74ed961 authored over 4 years ago by Jean-Marie Burel <[email protected]>
improve doc

7996c049a3b514082190782372533df7e5ff341f authored over 4 years ago by Jean-Marie Burel <[email protected]>
add python example

48526579d7676ff11e61870c5780f27dfde4d8f0 authored over 4 years ago by Jean-Marie Burel <[email protected]>
fix typo

55ee2d75067cc7ca1517f127effb0ada8ef7f92f authored over 4 years ago by Jean-Marie Burel <[email protected]>
rename env

c1ff08bf8e95682074177e91b594e24e8de3a59a authored over 4 years ago by Jean-Marie Burel <[email protected]>
update link to files

e1b423811cfba207bc9da0e400290fc90895ed23 authored over 4 years ago by Jean-Marie Burel <[email protected]>
Merge branch 'filter_other_fiji' of github.com:jburel/training-scripts into macro

0a07e71b83d1fd9b4f45403f1aa47a4b8544a951 authored over 4 years ago by Jean-Marie Burel <[email protected]>
keep relevant file

3a600bc4507bd90ac5221acb3538e5fc4217c22e authored over 4 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #7 from jburel/python

Python

f64f1bceaaa48669e224373d8749c6e6c5c490ac authored over 4 years ago by jean-marie burel <[email protected]>
improve display

54a47fc270f317c8554446249417a077d102af7f authored over 4 years ago by Jean-Marie Burel <[email protected]>
load 2D plane

1c1922f048c0d7d46e64759d66e89026cc2b28c3 authored over 4 years ago by Jean-Marie Burel <[email protected]>
clarify doc

72ff57903349551e99f2857fcd9eef4c61670683 authored over 4 years ago by Jean-Marie Burel <[email protected]>
add info for python support

1a96d8d5929ceb029c0e648619412013103cc2e9 authored over 4 years ago by Jean-Marie Burel <[email protected]>
change for ome 2020

17b7579dd5c6ec2ffcef529b8d3592f80fb1cc7a authored over 4 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #6 from jburel/pyimagej

Pyimagej

7c1ac7639049386239ab12319d57375a1f93daa4 authored over 4 years ago by jean-marie burel <[email protected]>
install zarr

badf9d741530fcdb9631b6e7990cbcecbf2d8fa3 authored over 4 years ago by Jean-Marie Burel <[email protected]>
add example of pyimagej and zarr

461ca0c1c64d3f994169aaac2ae1e0a89698434e authored over 4 years ago by Jean-Marie Burel <[email protected]>
add instructions for macro

e909ec250d1c36504090befd00c29242efe4724d authored over 4 years ago by Jean-Marie Burel <[email protected]>
add python dependencies

40ae6b031cf2431421e3901db93b4997a2d09944 authored over 4 years ago by Jean-Marie Burel <[email protected]>
add notebook for pyimagej

247e8666955d9dd343cefabe949a170bcac93c1c authored over 4 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #5 from jburel/binder

Binder

c48f39680180d8cf91705fda61dd0a2732c1e4c3 authored over 4 years ago by jean-marie burel <[email protected]>
invoke roi manager

3d2788ce474befd1211bb9e46c75ebb76b0b4e33 authored over 4 years ago by Jean-Marie Burel <[email protected]>
add roi manager

6c214b48a1126b06cec45b02572d2241c2212df6 authored over 4 years ago by Jean-Marie Burel <[email protected]>
add missing import

45a98422d15943ce811013add361ba598923a8a6 authored over 4 years ago by Jean-Marie Burel <[email protected]>
split notebook

710db8f1a2af652edffdab872f18af80e199fece authored over 4 years ago by Jean-Marie Burel <[email protected]>
add example using a local macro

830e1127257b29660ca850e8d9b0ec3ca1ea7c6b authored over 4 years ago by Jean-Marie Burel <[email protected]>
use websockets

84c44a30a43e4d28fef39ca58c654be0408d2977 authored over 4 years ago by Jean-Marie Burel <[email protected]>
split notebook

bea7bd5aaf43573cff6ca8c23426a90b7243fa45 authored over 4 years ago by Jean-Marie Burel <[email protected]>
add instructions

6af05596398e154d7fdcb625211a4b4f9bf70da6 authored over 4 years ago by Jean-Marie Burel <[email protected]>
fix port

e9d70fb5c79bd9a4c1ebeb0e5557f0d0d68de53d authored over 4 years ago by Jean-Marie Burel <[email protected]>
adjust notebooks with new setup

48228e54fd97491c33191d1af65a00a7f65a6065 authored over 4 years ago by Jean-Marie Burel <[email protected]>
Merge branch 'filter_fiji' of github.com:jburel/training-notebooks into binder

4efacf1d816bb37b627f46f7d318fc96c4a4aee1 authored over 4 years ago by Jean-Marie Burel <[email protected]>
move to notebooks

38b117a77bb0645900a77eb00777228d84f8c726 authored over 4 years ago by Jean-Marie Burel <[email protected]>
copy scripts to desktop

fa9b863e957ec79335fb7c54ebb32979fc98fa4f authored over 4 years ago by Jean-Marie Burel <[email protected]>
Merge branch 'filter_fiji' of github.com:jburel/training-scripts into binder

c8c39fecf736ebbe34b1c3ea162c1cde205eaf09 authored over 4 years ago by Jean-Marie Burel <[email protected]>
move to new location

8d20b33637725458d59c5817a5fe38dbdc6cd09e authored over 4 years ago by Jean-Marie Burel <[email protected]>
add support for beakerx and desktop for fiji

c758981f19961d73ee2475dda3161119ab61014c authored over 4 years ago by Jean-Marie Burel <[email protected]>
remove duplicate

c4d87fcd21f24058ddd3015de072b8fd9f7632c0 authored almost 5 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #4 from dominikl/update_fiji_script_guide

Remove outdated information

c4469f5a53a2c4676994a50a327e5978fd5de623 authored almost 5 years ago by jean-marie burel <[email protected]>
propagate fixes from #83 and #82

814ac572695ba45bfbc89d3fdc7eac1e94f3eebc authored almost 5 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #83 from dominikl/fix_fiji_script

Fix fiji script

95cc2ba129c1971d31f3beaf01d0b33da95756a8 authored almost 5 years ago by jean-marie burel <[email protected]>
Remove outdated information

2143587dcd28f0fdfc978f57276fe302270755cc authored almost 5 years ago by Dominik Lindner <[email protected]>
Fix fiji script

3cad723cc1ef0465092978d50f21410747b47bf7 authored almost 5 years ago by Dominik Lindner <[email protected]>
save_summary_as_csv uses local variables, not global

76215acc8b10f15774e88957932680101ee03434 authored almost 5 years ago by William Moore <[email protected]>
idr0021.groovy creates OMERO.tables cols without whitespace

be979fcd38d116764113ad1f606816ef296eebc4 authored almost 5 years ago by William Moore <[email protected]>
Merge pull request #3 from will-moore/add_script_link

Add link to idr0021.groovy script

47f7204ded87ee1591476df97431e2d887788f47 authored almost 5 years ago by jean-marie burel <[email protected]>
Add link to idr0021.groovy script

61960aef024a0a07af14e7c8ab24efd6fb4632d1 authored almost 5 years ago by William Moore <[email protected]>
Merge pull request #78 from jburel/groovy_cred

groovy script credentials

e6411897ac13a3c4ff1ba82d6373ea3473d48b37 authored almost 5 years ago by jean-marie burel <[email protected]>
Update practical/groovy/analyse_dataset_save_rois_and_summary_table.groovy

Co-Authored-By: Dominik Lindner <[email protected]>

e659978e07a7ec6327785641f6b2d8cef8f30f69 authored almost 5 years ago by jean-marie burel <[email protected]>
remove name

7911a74b6c5b5631f69acde237f27b058284000e authored almost 5 years ago by Jean-Marie Burel <[email protected]>
use method from gateway

e881391423c7eb45c237039c71b3f41239fa5642 authored almost 5 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #2 from pwalczysko/fix-install

Update install instructions - no zip and unzip

cf253c6446cd64a0bc0265812ee2ece635245bb7 authored almost 5 years ago by jean-marie burel <[email protected]>