github.com/ome/omero-common commits | Ecosyste.ms: OpenCollective

ticket:766 Adding sensible "conf" attributes to Ivy for OmeroBuild

* Cleaned up server/client separation
* Removed extensions (no more "core")
* Remoed qdox and...

2e8f8ea1611f45ed3bdf0c7ae90ac975aaf2d3d5 authored over 16 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

#888 more comments for r2557

git-svn-id: file:///home/svn/omero/trunk@2559 05709c45-44f0-0310-885b-81a1db45b4a6

90686fd78cdd83d68149b311a06af20f9cad3257 authored over 16 years ago by ola <ola@05709c45-44f0-0310-885b-81a1db45b4a6>

#888 mistake in comment of r2557

git-svn-id: file:///home/svn/omero/trunk@2558 05709c45-44f0-0310-885b-81a1db45b4a6

ee6c45e65549aa632b5a9a0ce7b057b444750110 authored over 16 years ago by ola <ola@05709c45-44f0-0310-885b-81a1db45b4a6>

#888

git-svn-id: file:///home/svn/omero/trunk@2557 05709c45-44f0-0310-885b-81a1db45b4a6

49473d014574e748e80d3948f525bcf2691baa92 authored over 16 years ago by ola <ola@05709c45-44f0-0310-885b-81a1db45b4a6>

#1020

git-svn-id: file:///home/svn/omero/trunk@2522 05709c45-44f0-0310-885b-81a1db45b4a6

32bbc8bf60d6b844eed9fd274c963fe303a2ec69 authored over 16 years ago by ola <ola@05709c45-44f0-0310-885b-81a1db45b4a6>

fixed missing javadoc.

git-svn-id: file:///home/svn/omero/trunk@2515 05709c45-44f0-0310-885b-81a1db45b4a6

6f800b69dd1e9b0e48b71c0e7bdca05c1309efe7 authored over 16 years ago by donald <donald@05709c45-44f0-0310-885b-81a1db45b4a6>

Converting tiki links to trac

git-svn-id: file:///home/svn/omero/trunk@2477 05709c45-44f0-0310-885b-81a1db45b4a6

4962f9ca5223f07408134c89971d944232de8ef4 authored over 16 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

Final method implementation for #891, createImage() and API.ice fix for missing exception.

git-svn-id: file:///home/svn/omero/trunk@2471 05709c45-44f0-0310-885b-81a1db45b4a6

168ad50950747c5f7eb6f176a02e15473e39a18f authored over 16 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

New features for #891 that allow copying from the Image level as well as options to copy and modify channel statistics.

git-svn-id: file:///home/svn/omero/trunk@2466 05709c45-44f0-0310-885b-81a1db45b4a6

229ea8abd35d4706dadab355be5895d5e5bad2d5 authored over 16 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

Forcing update of ome.system.Version for milestone:3.0-Beta3

git-svn-id: file:///home/svn/omero/trunk@2461 05709c45-44f0-0310-885b-81a1db45b4a6

88dd60ec348695a2a11b69a9a14da12f50763296 authored over 16 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

Bug fixes for exception mangement in the thumbnail store and rendering settings service:

* Re-organization of the rendering settings service "Set" methods to have a single try/catch blo...

6d1d2a976419a51b243337dc7c3205ef2734b16d authored over 16 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

ticket:975 Renamed boolean methods to `and()`,`or()`,`not()` from r2387

git-svn-id: file:///home/svn/omero/trunk@2401 05709c45-44f0-0310-885b-81a1db45b4a6

b3ddbd96bfe834b29f745a38eee1c27bd5bff6c2 authored over 16 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

OmeroSearch improvements for ticket:975 and ticket:976

* Added concept of union, intersection, complement
* Re-enablded `byHqlQuery()` (More document...

ef28a91f1759ba5f7b8cda33c8a226ec57f50175 authored over 16 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

JobHandle : revamped code for saving jobs (ticket:942)

* Made `Executor` an interface, tests use new Executor.Impl()
* Passing executor to `ProcessMa...

49b0f670009bb708d28708c0c451a30843474528 authored over 16 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

Added methods to set the original rendering settings

git-svn-id: file:///home/svn/omero/trunk@2364 05709c45-44f0-0310-885b-81a1db45b4a6

ecffef9c2540ef726cc5e4a76a599ab0c6f3f863 authored over 16 years ago by jburel <jburel@05709c45-44f0-0310-885b-81a1db45b4a6>

ticket:894 working on Blitz/RMI synchronization

* Added return type checks to ApiConsistencyCheck
* Changed `@NotNull` Integers and Longs to i...

1e34ba308ce7640efb0e432c63c518ed15b9dc7c authored over 16 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

Fix for #962.

git-svn-id: file:///home/svn/omero/trunk@2359 05709c45-44f0-0310-885b-81a1db45b4a6

b10fcb7bc91ed64ab4abd6e3a2130257ba733400 authored over 16 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

added delete, upload now expects each script to have a unique name

git-svn-id: file:///home/svn/omero/trunk@2356 05709c45-44f0-0310-885b-81a1db45b4a6

1e5671477e9db73bb53b21789d9cbebf2d022ab8 authored over 16 years ago by donald <donald@05709c45-44f0-0310-885b-81a1db45b4a6>

Spelling fix.

git-svn-id: file:///home/svn/omero/trunk@2346 05709c45-44f0-0310-885b-81a1db45b4a6

d37a4fdc0c0f294dfcb28506ed1487fb933bcdf1 authored over 16 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

* User context switching in thumbnail and rendering services (#874)

* Added more sanity checks (fixes #881)
* Fixes to thumbnail cache logic being user agnostic
*...

fb4c2f503f8657c5a8c8f5f19174197bb9526c6f authored over 16 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

remove

git-svn-id: file:///home/svn/omero/trunk@2334 05709c45-44f0-0310-885b-81a1db45b4a6

507abd5b6a618bab7f2691c84000fd91b0762522 authored over 16 years ago by donald <donald@05709c45-44f0-0310-885b-81a1db45b4a6>

scriptI fixed

git-svn-id: file:///home/svn/omero/trunk@2333 05709c45-44f0-0310-885b-81a1db45b4a6

a7514f9df236d12bd2ef5d91507d40080b18f622 authored over 16 years ago by donald <donald@05709c45-44f0-0310-885b-81a1db45b4a6>

Minor documentation change along with ticket:910

git-svn-id: file:///home/svn/omero/trunk@2328 05709c45-44f0-0310-885b-81a1db45b4a6

3aff4f3f119a8edaecf5050a546343c1846903d1 authored over 16 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

ticket:897 minor changes to Search.setAllowWildcard addition

* unifying API by passing boolean and adding a getter method
* added minimal test case

git-s...

84aecf2781ae3b8d0f7820ce871d3f5b3ad7da78 authored over 16 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

commit of the IScript Service, update of IPixels.copyPixels service,new OMEROJ and matlab and CellProfiler modules

git-svn-id: file:///home/svn/omero/trunk@2321 05709c45-44f0-0310-885b-81a1db45b4a6

e3e4313cf49440ba15991e7c9d69f94b316462bf authored over 16 years ago by donald <donald@05709c45-44f0-0310-885b-81a1db45b4a6>

Aspect ratio respecting thumbmanil set retrieval implementation for J-M (#904)

git-svn-id: file:///home/svn/omero/trunk@2317 05709c45-44f0-0310-885b-81a1db45b4a6

4a32b5484a0d61e73131ae43912c29e3e9980dc1 authored over 16 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

Leading wildcard patch merge from Aleksandra. (#897)

git-svn-id: file:///home/svn/omero/trunk@2308 05709c45-44f0-0310-885b-81a1db45b4a6

3341a59ecdca4790bbd28735bc3f921c5c67ae7d authored almost 17 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

Implementation of Pixels object duplication (#891)

git-svn-id: file:///home/svn/omero/trunk@2298 05709c45-44f0-0310-885b-81a1db45b4a6

03c7174cb90cc2dfe3ecd9eae645789b8f5c9a83 authored almost 17 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

OmeroSessions : Improved documenation

git-svn-id: file:///home/svn/omero/trunk@2284 05709c45-44f0-0310-885b-81a1db45b4a6

43246416e640c7f8b4dc85d84c8fc5894c52718b authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

OmeroGrid : Functioning ping.py (manually and via ISCript)

* Adding environment methods to ISession
* Fixing `SessionManagerI` rejoin issue
* Improving ...

46e63114a0b36c0a66b42b3a9ece2ab4d0af88a8 authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

added IScriptService to OMERO.Blitz

git-svn-id: file:///home/svn/omero/trunk@2270 05709c45-44f0-0310-885b-81a1db45b4a6

d28b37e8bbbb56a27f29008193b5906e436a844a authored almost 17 years ago by donald <donald@05709c45-44f0-0310-885b-81a1db45b4a6>

Setting unpassed values to null in Principal

git-svn-id: file:///home/svn/omero/trunk@2243 05709c45-44f0-0310-885b-81a1db45b4a6

120b3969ca5e9ceb3e811607574dab58281091a5 authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

r2213

git-svn-id: file:///home/svn/omero/trunk@2217 05709c45-44f0-0310-885b-81a1db45b4a6

df4db8bb932e6eb90947f21c8d7597512a7d6824 authored almost 17 years ago by ola <ola@05709c45-44f0-0310-885b-81a1db45b4a6>

OmeroBlitz : Api unification and correction

* Added `ApiConsistencyCheck` to always check each registered `ServantDefinition`
* #436 Remov...

a3c57cfde5f9e12204500a189f264dfb028629fe authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

UpgradeCheck : Additional testing for UpgradeCheck

git-svn-id: file:///home/svn/omero/trunk@2208 05709c45-44f0-0310-885b-81a1db45b4a6

1ec9aa5343dd350b0037a8ee25958cb16cdc553d authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

UpgradeCheck : Refactoring UpgradeCheck to common for client use

git-svn-id: file:///home/svn/omero/trunk@2206 05709c45-44f0-0310-885b-81a1db45b4a6

eea2bd355b0b6ce46782eba9da473fe2bbd52988 authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

OmeroSearch : Added system method to allow forceful indexing.

git-svn-id: file:///home/svn/omero/trunk@2199 05709c45-44f0-0310-885b-81a1db45b4a6

ef9eda208485ba2c37974cb335d5a6c792d25a66 authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

OmeroBlitz : Adding support for IceGrid

* Initial support for python-based processor
* Currently using shell scripts for start/stop. W...

f0df63162d60912da0f502788676590eec8b7130 authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

OmeroBlitz : Integrating new interfaces and preparing for OmeroGrid

* Integrating new interfaces
* Added `JobHandle`
* Added `Search`
* OmeroGrid
* Movin...

e0df9b95c24c8ece9aaf65d7da13b9a6643cec4e authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

OmeroSearch : More fixes

* Search interface now can return ordered results
* Unifiying Annotation discriminators for up...

0798150a7ec1d92b0571fdc7f3975449bb392c48 authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

OmeroSearch : interface cleanup and completeion

* Removed unused methods from interface
* Implemented `byTagForGroups()` via `TagsAndGroups`

...

da3a9bc9d1a8594d415d7ef8388bcc571f215685 authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

OmeroBlitz : New Entry class for startup

git-svn-id: file:///home/svn/omero/trunk@2152 05709c45-44f0-0310-885b-81a1db45b4a6

f4a465fd160cae0c8fb3e7f0e679e75b926de0b4 authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

OmeroSessions : Adding ISession & Co. to blitz

* Adding principal type
* Moving definition of static `sessionId` due to build quirks
* Also ...

5560abbe6399ae2d3fea795ac2284bdc44a3f12d authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

OmeroSessions : Password/login logic

* Moving methods for expired and forgotten passwords to IAdmin
* Using `SessionManager` from `...

7b6fc267b05f117182ef6ac46f529d02da3412d5 authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

OmeroSessions : Adding `SF.closeSession()`

git-svn-id: file:///home/svn/omero/trunk@2138 05709c45-44f0-0310-885b-81a1db45b4a6

0c02675dc296dd5a9283affa62c620a890c8f4ff authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

OmeroSessions : client integration

* Making each service proxy creation more stateful
* Improved target source used by all proxis...

50e9e012c6c6693f80d2981d6da2262a25b3071a authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

OmeroSessions : working on deadlock

* Only update events created after last update will be run
* Redefined `IAdmin.synchrnoizeLogi...

defdc782d7269becb0a4cf40876d9efa8f7b5fce authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

OmeroSessions : Preliminary client-side fixes

* Ran `SearchTest` from client
* Using generated principal

git-svn-id: file:///home/svn/omer...

39ab2223d176f5b371608592781f872747021b80 authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

OmeroSessions : Largely functional

* Problem with recursive Executor call
* Added current-sessino-id/uuid to `EventContext`
* Fi...

9e69dd5d9dcf0e4352505131ba062e9515334b80 authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

OmeroSessions : `SessionCache` and exceptions added

* All code compiling
* Changed omero.version
* Incremented DBPATCH to OMERO3A__2
* `SecSys.c...

b551aa7c397c0fc9b381b38b785b3b1743ac7ddf authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

OmeroSessions: Partial implementations of `SessionBean` and `SessionManager`

* Added LocalAdmin.getUserRoles() and SessionContext.getUserRoles()
* Removed own `SessionCach...

16a600cdf993d2e1305c921a2b2fd65e49bf09a6 authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

OmeroSessions: Compiling and fixing tests.

git-svn-id: file:///home/svn/omero/trunk@2118 05709c45-44f0-0310-885b-81a1db45b4a6

3107d9872ee6c14ccb821602a8f2ec94d5476370 authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

OmeroSessions: Initial implementation of session service

* includes unit tests and jars for notifications serveice (bus), based on Mule

git-svn-id: f...

beaaca91eff51aa7c6188bafa6faa3032a2b4969 authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

OmeroSearch : onlyIds(), fetchAnnotations(), improvded orderBy

* HSEARCH-97 explains how to fix time-based sorting via byFullText()
* onlyIds() functional fo...

3ea49407ce3fa966109d164c789b20556d948e32 authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

OmeroSearch : Added `notOwnedBy` and `notAnnotedBy`

git-svn-id: file:///home/svn/omero/trunk@2108 05709c45-44f0-0310-885b-81a1db45b4a6

bffe9abd79999963e50b17bcf4692b66d49bcb9f authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

OmeroSearch : Allowing multiple `AnnotatedWith` arguments via `QueryBuilder`

* Refactored various methods/classes out of `FullText` and into `SearchAction`
* Ported `Annot...

4d1367427569601e96ff37f5c7b45bf0e98ab037 authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

OmeroSearch : `byAnnotatedWith` limited to a single `Annotation`

* Refactored much of `FullText`'s logic for use by `AnnotatedWith`
* Need to try to port Crite...

c2d99fd844b07e94ea1f0c5bdd723fde0bcb9256 authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

OmeroSearch : Added orderBy logic for `FullText`

* Added `addOrderByAsc()`, `addOrderByDesc()`, and `unorder()` (may change)
* Currently using ...

548f7a8554f9c49c3fbdc9337f37b1554a89098d authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

#747 & #841

git-svn-id: file:///home/svn/omero/trunk@2100 05709c45-44f0-0310-885b-81a1db45b4a6

51fb04697b75743f55d20bb49566abe80ce07329 authored almost 17 years ago by ola <ola@05709c45-44f0-0310-885b-81a1db45b4a6>

OmeroSearch : Addition of some-must-none as subclass of full-text

git-svn-id: file:///home/svn/omero/trunk@2099 05709c45-44f0-0310-885b-81a1db45b4a6

9e6de22cb8fcc941c4c7d7ce818d9a57826b7de9 authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

Now sorting prefs.java output

git-svn-id: file:///home/svn/omero/trunk@2084 05709c45-44f0-0310-885b-81a1db45b4a6

3e391f3e9fca47938485422bd1005d99678d0782 authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

OmeroSearch : Significant improvements in Search bean

* Working byFullText search, with most settings
* Includes first "selfManagingService" using t...

f60662a96301282122a2759f76acb0154d44fa88 authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

#800 PreferencesContext to use prefs.class-set values

git-svn-id: file:///home/svn/omero/trunk@2063 05709c45-44f0-0310-885b-81a1db45b4a6

acdbf139be451f884e07e0021e5ed1e9db644f0b authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

StructuredAnnotations : Reactivating `IPojos.findAnnotations`

git-svn-id: file:///home/svn/omero/trunk@2049 05709c45-44f0-0310-885b-81a1db45b4a6

518bf84864c4932f2e9c7987b401d38ad56e6a4d authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

OmeroSearch : Minor work on ome.api.Search. Non-functinoal

* s/By/by/g
* Added to `ServiceFactory`, etc.

git-svn-id: file:///home/svn/omero/trunk@2043 ...

a0b3cb376a05434d61cea18507fcef51f750fa06 authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

Adding ${omero.db.profile} to model component (again)

git-svn-id: file:///home/svn/omero/trunk@2039 05709c45-44f0-0310-885b-81a1db45b4a6

3ebed753d7e0ae2e9d3fa4f2a5bb3074e35ab623 authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

OmeroSearch : Initial implementation as IQuery.findAllByFullText

* Filter.owner() and .group() are functinoal
* Restricted via IQuery to a single class
* Stor...

f26390e08ace2d2b7d9359df27108e5bac313e5b authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

ticket:857 Working DeleteService

* Renamed verifyImageDelete to previewImageDelete
* Adding server side tests
* Minor other fi...

269fbd301a5924228bd63fe873e2ad9fd94b99eb authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

ticket:857 Initial implementation of DeleteService

* Only `Datasets` are consider to be constraining
* `ImageAnnotationLinks` are removed, but `A...

dfb7669d219b593f0b17381fd8be11af1e5c939b authored almost 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

Updating .classpath files

git-svn-id: file:///home/svn/omero/trunk@2019 05709c45-44f0-0310-885b-81a1db45b4a6

4427aefec1c6eea5e000c11d320b61070e40ccf4 authored about 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

StructuredAnnotations : Working client-side

* All tests pass except for Search and count related calls
* Fixed issues with combined.vm mis...

a832cd4b544b68f943cb95d80b3f8f30f1b32ee9 authored about 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

StructuredAnnotations : Pre post-beta2.3 rebasing commit

* Improvement (less cut-n-paste) in hibernate.xml
* Various minor TODOs, etc.
* hibernate.pro...

0a07bd2ede9994d436c856d707d9e2d6def31615 authored about 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

Search : Initial skeleton for `SearchBean`

Each of the `QueryTemplate` types now need an action
associated with them.

git-svn-id: file://...

13fa6b1861ecd62ae3cb675dbd0bef3bac6f6552 authored about 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

StructuredAnnotations : More improvements, working on tests compilations

* sql.dir now points to sql/psql/OMERO3B__1
* Added ome.api.Search interface
* Added DetailsF...

ec743e97e30622206abeb6bf2fe1e7e8c035f834 authored about 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

StructuredAnnotations : Removing duplicate classes to begin integrating model/ component

Conflicts:

components/common/resources/mappings/acquisition.ome.xml
components/common/src/ome...

a4542f1371f4bb8c7cfd35e81e54549c1186af19 authored about 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

StructuredAnnotations : All compiling

* Moved `ModelBased` from ome.api to ome.model (breaking change)
* Added a temporary fix to At...

3df1b7697b419e08751886071236bc4ba9f7da08 authored about 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

StructuredAnnotations : First attempt at an attribute hierarchy

This is a somewhat simple-minded approach, and will probably
be dropped in the future, includes ...

220a0b3c8099a0dd88472dcaabdf5409ad73af05 authored about 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

StructuredAnnotations : Initial (pre-change) testing

* Contains a basic perf test for `ImageAnnotations`
* Using jamon

git-svn-id: file:///home/s...

c7216da4d9518558678fc2aff56505d3e5669514 authored about 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

Implements changes laid out in #854. Large amounts of the interface definition have also changed to make the generics usage both more explicit and cleaner.

git-svn-id: file:///home/svn/omero/trunk@1985 05709c45-44f0-0310-885b-81a1db45b4a6

461ca1ed72e0063cb5792ec7f91492ea366286c4 authored about 17 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

* Fixed a few missing {{{clear()}}} calls that resulted in transactional state being left around (#848)

* Added a pre-release "bulk" thumbnail retrieval method for cached thumbnails only

git-svn-id:...

11ebb0f48ae61d0a7ec353d0def9a6ed721bbc6e authored about 17 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

#847

git-svn-id: file:///home/svn/omero/trunk@1967 05709c45-44f0-0310-885b-81a1db45b4a6

6d3dfa1231f62d4e07dcc2ec3eacb9a21ccb1696 authored about 17 years ago by ola <ola@05709c45-44f0-0310-885b-81a1db45b4a6>

OmeroPrefs #800 : Now handling system preferences as well

git-svn-id: file:///home/svn/omero/trunk@1952 05709c45-44f0-0310-885b-81a1db45b4a6

30ed58c0bf2491bf00a0fad25d130ed5ae201ee4 authored about 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

#800 Preferences utility for moving away from file based configuration.

git-svn-id: file:///home/svn/omero/trunk@1951 05709c45-44f0-0310-885b-81a1db45b4a6

6fce878b5a05d79500c5ce0c5b816f6b38c3bf9f authored about 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

#841

git-svn-id: file:///home/svn/omero/trunk@1945 05709c45-44f0-0310-885b-81a1db45b4a6

413a7cbc735c611fdde80678665cc6f522c555b4 authored about 17 years ago by ola <ola@05709c45-44f0-0310-885b-81a1db45b4a6>

changes for #840 and display page for #841

git-svn-id: file:///home/svn/omero/trunk@1944 05709c45-44f0-0310-885b-81a1db45b4a6

5f2890f2a6b3cccc7eed789dfc09d8faed4f93d1 authored about 17 years ago by ola <ola@05709c45-44f0-0310-885b-81a1db45b4a6>

more changes for #446 plus #840 and #839

git-svn-id: file:///home/svn/omero/trunk@1941 05709c45-44f0-0310-885b-81a1db45b4a6

ab2f59c1a37b7108f5f5068ee955399b205435d0 authored about 17 years ago by ola <ola@05709c45-44f0-0310-885b-81a1db45b4a6>

#837

git-svn-id: file:///home/svn/omero/trunk@1935 05709c45-44f0-0310-885b-81a1db45b4a6

66a7c5b94977884e9ce1e01a7eac5dd3463a99de authored about 17 years ago by ola <ola@05709c45-44f0-0310-885b-81a1db45b4a6>

more changes for r1931

git-svn-id: file:///home/svn/omero/trunk@1933 05709c45-44f0-0310-885b-81a1db45b4a6

06716344b22fecf335069348ad2ded99266a5571 authored about 17 years ago by ola <ola@05709c45-44f0-0310-885b-81a1db45b4a6>

#651 and #446

git-svn-id: file:///home/svn/omero/trunk@1931 05709c45-44f0-0310-885b-81a1db45b4a6

f35252517588338e0e23c618b32fe3e63e9600e4 authored about 17 years ago by ola <ola@05709c45-44f0-0310-885b-81a1db45b4a6>

`ServiceFactory.getServiceByClass` now made public

git-svn-id: file:///home/svn/omero/trunk@1900 05709c45-44f0-0310-885b-81a1db45b4a6

581c4e5a2733503579c789ea8d1e0116453c5520 authored about 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

* Removed the last remenents of the OMERO rendering engine sync.

* DeltaVision image sequences are "short" not "integer" values

git-svn-id: file:///home/svn/ome...

4bad9458bf7085e49eb245e667625bc4c3440411 authored about 17 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

Implements #821 (exposed via JBoss and Blitz), cleans up some unused imports and gramatical errors in the javadoc.

git-svn-id: file:///home/svn/omero/trunk@1892 05709c45-44f0-0310-885b-81a1db45b4a6

e8da9feef4ca7c515c48ea66496d61de96c0bf44 authored about 17 years ago by callan <callan@05709c45-44f0-0310-885b-81a1db45b4a6>

Initial version of `FileUploader`

git-svn-id: file:///home/svn/omero/trunk@1871 05709c45-44f0-0310-885b-81a1db45b4a6

3176d08bb9623b590b7e9ff2c349b39848d8e2f3 authored about 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

JobHandle : integration working, though async process() needs login

* Updated omero.dbpatch to OMERO3__7
* Added ScriptJob and all necessary changes for SQL
* No...

c67990ea759f7be1b3920f42ad6316938575759a authored about 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

JobHandle : Improved implementation with passing unit tests

git-svn-id: file:///home/svn/omero/trunk@1868 05709c45-44f0-0310-885b-81a1db45b4a6

487c41f43a0072d92f8b8ee459062f21e2a6ee63 authored about 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

#803 : Widening float4 columns to double precision to prevent underflow

* Changed omero.dbpatch to OMERO3__6
* Added license statement to all SQL
* Added BEGIN/COMMI...

6a63f2aac3b77c76a49c3995a7d5133fe5770f4f authored about 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

more changes for RenderingSettings #6

git-svn-id: file:///home/svn/omero/trunk@1852 05709c45-44f0-0310-885b-81a1db45b4a6

9a453400668c69f7a4859a25ef4dffb1d3c0c20b authored about 17 years ago by ola <ola@05709c45-44f0-0310-885b-81a1db45b4a6>

Added resetDefaultsNoSave method

and fixed problem in resetDefault method where missing save if renderingDef != null

git-svn-id...

3d3a1857dea928646e078498584e7a994bca43d0 authored over 17 years ago by jburel <jburel@05709c45-44f0-0310-885b-81a1db45b4a6>

#657 : Fix for collectCount (~4x speed up)

Previously, the collectCounts method was using an ever-larger SQL IN
clause which was hurting pe...

6fa873f634929c775d7b8404f242922dae825ae3 authored over 17 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>

more changes for 1826

git-svn-id: file:///home/svn/omero/trunk@1837 05709c45-44f0-0310-885b-81a1db45b4a6

65aab1a70ee5300632572fdb69b8ef570a69eb01 authored over 17 years ago by ola <ola@05709c45-44f0-0310-885b-81a1db45b4a6>