Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/ome/omero-common

Gradle project containing common utilities for OMERO
https://github.com/ome/omero-common

[tests/bugfixes] hibernate tools, details

* now use $c2j.getJavaTypeName($property,false)
* Details had NPEs on toString() (Doh!)
* now on...

15eb782c2c0fe237ab91b97aef6de93998ef7f1a authored almost 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
OMERO3 Update (Working!)

========================

[Dependencies]
* upgraded to Hibernate 3.1.2
* upgraded to Spring 2.0-m...

0d48bc1f94c1ea1f09e523d8d06b949022c82a9e authored almost 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
OMERO3 Update (cont'd)

======================
[Model]
* Extensions to IObject (validation/dynamics)
* Details now has...

c231a9164c239fdd17fa73f9d5c2d979650a5bfc authored almost 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
* OMERO3 * Major Update... (Possibly unstable!)

==========================
[API]
* Renamed interfaces to I<> (avoid conflicts with Omero2)
* Re...

6215a1952504a437b224d7f6af9e7448f3226cd2 authored almost 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
[MODEL/DSL] various small changes

* experimenter.email not-not-null, but names not-null
* enums (PIType, ModelType)

git-svn-id:...

3af2a2226a51175a93251199bafdc64ee4fa60ef authored almost 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
[TYPES] lowercased PIType for Chris

git-svn-id: file:///home/svn/omero/trunk@328 05709c45-44f0-0310-885b-81a1db45b4a6

ef5c4478002b211cc3a03231e6a72246c805a282 authored almost 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
[DSL/MODEL] cascading, globals, and experimenter/group

======================================================
* currently trying more cascading types (n...

c48b94865431e96f4a8312311111b60db01ece86 authored almost 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
[DSL] added enumeration data generation

---------------------------------------
* data.sql is now generated beside ddl.sql
(common/targ...

16240bc168d31f6158b3a8ec6b79dde163f15899 authored almost 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
[Build] Excluding avalon & logkit on top-level commons-logging

* Removed avalon & logkit from all .classpaths
* Should move to jcl-over-slf4j after it's releas...

c1941c4db135b9a2d93795490fa15fb0729d51db authored almost 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
[Model] Fixed LogicalChannel and added var. *Settings

git-svn-id: file:///home/svn/omero/trunk@316 05709c45-44f0-0310-885b-81a1db45b4a6

dd8abb766799282b618eaa451a46b36c5ac72ee6 authored almost 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
[Model] LogicalChannel and RenderingDef improvements

* uses new dsl "ordered=true" property

git-svn-id: file:///home/svn/omero/trunk@314 05709c45-...

01a96da64e58296744425272e8235e6901c4687b authored almost 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
[BUILD] varia

+ postgres as global test dependency
+ postgres as fixed server dependency
~ different postgres ...

6000f334dfaaa624c9a78b3c1a9d797b53c4564f authored about 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
[MODEL] Chris gets his Longs

git-svn-id: file:///home/svn/omero/trunk@301 05709c45-44f0-0310-885b-81a1db45b4a6

d0f6c918b3ee65f0c2ec05d331f8b6e518901d85 authored about 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
[BUILD] various fixes to codegen

* using groovy for warnings (1/8 the code)
* slice2java now failure
* postgres systempath now wo...

740fb54d35cc7e6fe7ac396ee40a895229b530d2 authored about 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
[BUILD] revampled build system.

* new antlib/ component to make life simpler
* got omero-ice out into own component
(Makes li...

558e9dcfc6e5bdd58eb32e3ac1dd6addbc5df722 authored about 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
[MODEL] add chris' sha-eins

git-svn-id: file:///home/svn/omero/trunk@285 05709c45-44f0-0310-885b-81a1db45b4a6

b712315f460161cad5a11e2c6ef859de92b659a7 authored about 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
[BUILD] craziness abounds. or abounded.

* fixed test for csharp compiler
* (partially) fixed non-skipped stages
* need to split build.xm...

ea2f655471cebaa4d2a3367c59cb334d9c932b7d authored about 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
[SANDBOX] more functionality (getting Valentin ready, etc.)

* Added needed ice files (config, ant xml, slice) for ice example
* Added python example
* Added...

71ef0a9b43627bcc8592cbbfe3e12c4513c60e4d authored about 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
[TEST] updated mono test to 3.0.0

git-svn-id: file:///home/svn/omero/trunk@280 05709c45-44f0-0310-885b-81a1db45b4a6

3f0e14165c9b5e93fa2760c9929b1c5d4e8829c4 authored about 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
[BUG] Missing "unless" check on patchJava target

git-svn-id: file:///home/svn/omero/trunk@279 05709c45-44f0-0310-885b-81a1db45b4a6

cc4af6ae07a2a4f7bdb935ed75f99d8785ba599e authored about 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
[BUGS] Adding code generated common/tests/mono files

*shrugs*

* not the best solution, but otherwise those without
slice2java wouldn't be able to ...

f49aa1e2a3db8283c417fd2df2f880e969d9b496 authored about 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
[CODEGEN] Various (some unneccesary) changes for Python et al

* Fixed "echo mesage=" type
* Had to use Groovy to get slice2py working
* Learned that it's easi...

27a23afc3491dda6d63973c33f6edf59d627a7db authored about 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
[MODEL] NOW! the build is working.

=--=-=-=-=-=-=-=-=-=-=-=-=-=-=-=-=
* Much improved build.xml with conditional targets
* Minor cha...

95d766edc040763ecf16bbed5e35770a332ed458 authored about 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
[MODEL] Working data model for Omero3 !!

----------------------------------------
* XML-based DSL
* Velocity templates for ice, hibernate,...

85e1eafd5ebc1277c5a97aef4711739c3b2b152a authored about 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
[PATCH] error detection in common/build.xml

+ missing Perl, Mono, and slice2* are now detected
+ warnings issued, targets not run. Etc.
+ lot...

087dcba8ca4411e0fb2ae7e2fc5f6c229ba38c52 authored about 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
* build.xml classpath fixed; uses target/classes (thanks, Brian!)

git-svn-id: file:///home/svn/omero/trunk@259 05709c45-44f0-0310-885b-81a1db45b4a6

6ac134752a70128e1259c1d98fefb81ea581ca26 authored about 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
DSL Check-in:

------------
* Began using maven2 (dsl,common only)
* DSL parsing and model useable
Need: secu...

5e0c256229224cd2962667761134b2a28b1fcc7a authored about 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
Model2IceMapper:

---------------
* Got common/test/mono working
(various imports, added to classpath etc.)
* Ad...

d7111a794a51b30e0a7a2e57c8fa0d2066e0af46 authored about 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
OMERO3 Model Switch!

###################
###################

Common:
------
* Old model gone. BOOM!
(Projects othe...

44fdedb3803d8dcc4915db7d669683a60c79a8c5 authored about 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
* Added ${omero.version} to trunk/.../project.{xml|properties} [3.0-alpha]

git-svn-id: file:///home/svn/omero/trunk@218 05709c45-44f0-0310-885b-81a1db45b4a6

9a7b303c194c56ed5065d2bab76f13535639e790 authored about 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
* Fixed bug in ModelMapper; re-overriding filter(*)

git-svn-id: file:///home/svn/omero/trunk@216 05709c45-44f0-0310-885b-81a1db45b4a6

b4b959ea5df3b3e080171340a8733cf0a7dd4b03 authored about 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
* Using refactor AbstractPojosServiceTest in server

* Added MODEL_UPDATE documentation. Ready to branch.

git-svn-id: file:///home/svn/omero/trunk@...

0a0ecba02e5a1221300b86bb0b50d7a8805d975b authored about 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
PojoAdapter integration test

----------------------------
* Added integration test (with minimal testing of mapping)
Refacto...

9f7d3d0347a8cc9ea783de592b86407bbd049b59 authored about 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
MODEL2POJO Mapping

------------------
* Simplification of mapping process
* Added ModelMapper->Model2PojosMapper to ...

3617e8411813399f5bdecb305a93f4d09f28e604 authored about 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
Model Update

------------
* Updated model to OME_2_5
* Added FieldFields (to javaclass.vm template)
* These wi...

080d47bcab314e69987207ae9b4a68ae8093b8a3 authored about 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
PojoService (functional)

-----------
* Added Velocity-based query generation
* Implemented PojoService using GenericDao an...

6c54c72ea370fbd2ed3ef78ab209e4ff8499f052 authored about 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
Pojos Api (update)

---------
* Checked documentation against Jean-Marie's notes
* Added int algorithm to find CGCPat...

ad455b22380271791a98a615412efe0f2dc2f6b0 authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
ome.api.Results (draft)

---------------
* store,find,query,retrieve methods
* also bulk and primitive
* needs work!

gi...

0c7f27e02d31dec924875bfa66b2b689c1de929a authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
PojoService Initial (Non-functional)

-------------------
* Moved OptionBuilder* to common/**/builders/PojoOptions
* Created common/**/...

1132b084f522fcef4d3a637534a53154f4788ee6 authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
PixelsService (Metadata read operations)

-------------
* Added Pixels{api,ServiceImpl,Dao,DaoHibernate,Test}
* Added to {services,security...

0534b956abf02efcff99c5052b87a1fc20100a26 authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
* Added .svn filter to eclipse .classpath files

git-svn-id: file:///home/svn/omero/trunk@201 05709c45-44f0-0310-885b-81a1db45b4a6

0393fa7fa05ede11622afe94b09e8c41c6de5356 authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
DROOLS STARTUP

==============
* Add drools dependency (project.xml & .classpath)
* Added package ome.rules
* Add...

ac918b3a42c930f86c916c7a948e3134d563f8ec authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
Testing && Cleanup

==================

* Finally removed DaoUtils stuff (including in model)
* Removed several tests...

1853c12d1007837e52e70decddf3902db5d4a5fa authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
----------

Facades:
----------

* First attempt at a facade
* Permits calling a method with primitives only...

44bca03d9096f1d63423eb20eae7ad663ed0d572 authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
* Null-pointer exceptions due to misuse of ThreadLocal

git-svn-id: file:///home/svn/omero/trunk@182 05709c45-44f0-0310-885b-81a1db45b4a6

f76c28f8c7bfa4b0777980b1a093620f2a35c1e1 authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

* BIG MOVE *

Shaved off another 2 directories....

3cafcf80e2708bd740ba679bddce67ae69f92746 authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
*****************************

Visitor Checkin (plus some)
*****************************

* [CMN] Added visitor-like method to ...

2e816e8f6f3113bef0252502e2c27496df251651 authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
* AND AGAIN with the missing file (ome.api.Analysis)

git-svn-id: file:///home/svn/omero/trunk@169 05709c45-44f0-0310-885b-81a1db45b4a6

cc7fc7103399e2f4ffab5b478ffd2abfd118b09d authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
ANALYSIS SERVICE:

----------------
* Added Analysis(Impl,Dao,DaoHibernate,*Test) service
Needs more testing

...

e9c5f9df91582053e572b05e96305d75e45b0f32 authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
MISCELLANEOUS (pre-baby) CHANGES:

---------------------------------

* Added ome.api.Pojos to common.jar
* Added Hibernate prop...

49092e088191b420e860463b3d880c3add2aaf92 authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
~~~~~~~~~~~~~~~~~~~~~~~~~~

* WRITING FUNCTIONALITY *
~~~~~~~~~~~~~~~~~~~~~~~~~~
(music plays)

* Added Write interface to ...

c584fc995929ab0d1d7a259141cdfb5751df42f1 authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
Speed comparison:

----------------
* Propagated annotation calls to test classes
* Added new jython script for Grin...

f40029b99e583eb29d2fc3cfeff19288028bd909 authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
Shoola integration Working!:

------------------------------
* Added new PropertyConfigurer for Client (to Test)
* Added Return...

3af81f990517e2c5ae429a0c15731e28b723079e authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
Working on Shoola integration:

------------------------------
* CGCPaths are now (and have been) working
* Minor glitch in Abstr...

136ecef0d62159843460fcd9381e29d8be8c1e1a authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
Trying to get things working on J-M's machine.

git-svn-id: file:///home/svn/omero/branches/omero@144 05709c45-44f0-0310-885b-81a1db45b4a6

089e0775f5c8eb9f6eeadaba0819ca5aed76d869 authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
Path/Model changes:

------------------
* Regenerated model W/O image_pixels.path
* Added API calls findCGCPaths(Set,b...

bba63ccedabce9569bab9007cd8acfe3da11f468 authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
Beginning Integration for Shoola-Adapter

----------------------------------------
* Now using Pojo* versions
* Renamed HBView --> PojoOmer...

385b8306702f6409034200c29fb780f8231acac0 authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
* Minor changes. Going to work with J-M.

git-svn-id: file:///home/svn/omero/branches/omero@140 05709c45-44f0-0310-885b-81a1db45b4a6

30560342447c04292553651dd7a194bc5a239c70 authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
Large changes (including HB interface!):

=========================================

* Updated to Spring 1.2.2 (using version prop)
* Ad...

acbb5b557874d31ca9f16c4601f2de6a80b7d100 authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
* Getting rid of old TODOs

git-svn-id: file:///home/svn/omero/branches/omero@136 05709c45-44f0-0310-885b-81a1db45b4a6

ceea4de2062adac00ccb4e98f21a1bb64526bae8 authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
* Fixed various TODOs (ContainerDao*)

* Removed unneeded imports
* Added performance tracing (Jamon)
* Built site / added&removed vario...

5b5599b14cd7e35616eae9889e1e41e50a7094b4 authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
* Removing model2 -- no longer needed since not

hiding classifications.

git-svn-id: file:///home/svn/omero/branches/omero@134 05709c45-44f0...

2d95690c220207b883ee7a9e781e7fcb844aaa8a authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
* Fixed copyright --> 2005

* Added copyright to all *.java files

git-svn-id: file:///home/svn/omero/branches/omero@131 0...

cf81e249328a58ba8365610979703bb80f65b89b authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
Minor changes to grinder tests. Updating so I can run

locally on nightshade.

git-svn-id: file:///home/svn/omero/branches/omero@128 05709c45-44f0-031...

c52cd2eb8b165d0abde282cf99b6b46abd485736 authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
Testing on nightshade: OME-JAVA vs OMERO

----------------------------------------
* Running works fine; still a few missing shoola calls...

579da901dfc3845d1eb40ae43b73fec283033271 authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
...Finally got the dasterdly fiend (bug in findCGCI).

LOTS of changes, things are messy (especially build process)
but that'll get improved next.

--...

0a1add8ed9bfb5bd3e272a7123f9cc8a284d6833 authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
Lots of stuff:

* Added dataset.name != 'ImportSet' to queries
* Worked on testing
* Shoola and Omero now ret...

8a67e79c0556c471a8010c699046621bb74f18f6 authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
Added hashcode and equals to code generation process for model

git-svn-id: file:///home/svn/omero/branches/omero@116 05709c45-44f0-0310-885b-81a1db45b4a6

40f247b750f9209faf0637a76cc74c6e5a009b32 authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
What the HELL is this doing here?

git-svn-id: file:///home/svn/omero/branches/omero@113 05709c45-44f0-0310-885b-81a1db45b4a6

2761ebb442c9f121a45c3335d45f883ccba57126 authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
*** NEW MODEL ***

1) Got 2.4.1 db and redid code-gen.
2) A few hand modifications were necessary in Group.hbm.xml ...

4415dc69cca3c42bdeea57abd0efd3a99c51d9dc authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
* More libs (Spring!) to main project.xml

* Added files to server/test/WEB-INF/test
* Added more pregoals to clean:clean

git-svn-id: fil...

cc9a1ff549499ec4eda9164fd862a264055c5d7b authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
* New and improved queries. Here's what we got to work on.

* DbUnit up and working. A bit slow, but eh.
* Moving common dependencies to main project.xml
* A...

88bb56a6ed46e36b25848dd503c4780b68678242 authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
A bit quirky at the moment but things are working well.

*) Worked out jython issues in Grinder script
*) A rough method for writing u/i-tests for Spring...

368f7eafe74e72c9321b44393b465b4bc4ee02a9 authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
Documentation / Javadoc update. Also added some logging.

git-svn-id: file:///home/svn/omero/branches/omero@104 05709c45-44f0-0310-885b-81a1db45b4a6

944852b7244c8e5fe87ff8d20fb36dbef27b44df authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
Lookin' good. All tests pass, though there's one

transient bug (see OmeroThumbnailsExplodes....java)
Hoping it'll pop back up.

git-svn-id: file...

774916540db8d79e5908699129eb452c5d8c888c authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>
Still moving things around to get integration tests working.

Now solidifying on **utests** and **itests**.

git-svn-id: file:///home/svn/omero/branches/omero...

06f786e16a762974c40d0dec8c91b72ce428351c authored over 19 years ago by jmoore <jmoore@05709c45-44f0-0310-885b-81a1db45b4a6>