github.com/ome/omero-common commits | Ecosyste.ms: OpenCollective

NPE caused by #192. Hopefully fixed.

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c15950fdd99dbcf2c427f17e174e43b6fa3df0b1 authored over 18 years ago

Refactored API constraints to ome.api and added generics (#192)

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fba65072bc75c26900d618196c01694538e3aa43 authored over 18 years ago

Updates for #144. (Also adheres to r736 / #87 )

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8aa5024bbe69459e542c8df2450a5b0f35d792ce authored over 18 years ago

Finally fixed #174 by wrapping Beans in Spring aop. Nasty, nasty.

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814a17961674a0dee77eea857f3edc0afae49e1d authored over 18 years ago

Renamed model collection accessors to close #87. May break code.

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f43142ab4bdbc0c5111b6215699ae77837c59829 authored over 18 years ago

Missed changes from r726. (Library updates)

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dc6ba6b40193a237d9a99255e85f4895eb7802bd authored over 18 years ago

Features for Jean-Marie outlined in #188. In addition, all usage of OmeroContext to retrieve query services has been stripped out of the rendering engine and added to the pixels service.

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0cf0ccd73c5dc7fdb7a63a89e41dd3ca5a60ef38 authored over 18 years ago

Fixing the types we need for rendering engine initial testing. (Partially closes #187)

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b9caf243b3a100e9a6d3c4dacb5379fd96a55b02 authored over 18 years ago

Huge rendering engine transition:

* Completion of #7 by and large with MappedByteBuffer's propagating throughout the rendering eng...

069ffcf1035ed688b30afe8ad89b763f65cd748d authored over 18 years ago

Major EJB overhaul:

* Adds RawPixelsBean (#170)
* Fixes RenderingBean (#174) (see SessionHandler)
* Fixes passiva...

4910c662a536cb944c762126ddaca3fdb9cafd7c authored over 18 years ago

Added ctor to Parameters.java. Needed for new query tests (see r727)

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7c219ecd06e6e32f7a91599722f704d3cccf26ab authored over 18 years ago

Fixed ConcurrentModification problem, probably stemming from Javassist.

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6eb672088629e8049bb6ec2e413bf674c157c764 authored over 18 years ago

Added javassist bytecode detection (for Hibernate 3.2). See r726.

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de03d10ec191b5ccbce88686695c8d59c34a75d0 authored over 18 years ago

Classpath update. Spring 2.0-rc1 / Hibernate 3.2.0.cr2

Also minor config edits: omero.properties, omero-ds.xml

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7033a11b5dd5e149152dd8c02afc1f522c93dce7 authored over 18 years ago

Making Filter serializable.

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938807a3ee046f71e94c3b25128d05f76aaa2a63 authored over 18 years ago

Changing client-side build to use Java5. Closes #154 and #160.

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02295e7e4d785db77c11a96968800d408d716c73 authored over 18 years ago

Non-implemented methods for IAdmin (#44) for review.

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fb90b40ecaa447999d88598722d193c880913ec5 authored over 18 years ago

Implements `OmeroContext.refreshAll` a la #116.

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1714005b735bcfaaf10d7c7e9a3fecbd6254dbbb authored over 18 years ago

Apologies: "atomic" transaction r704 needs this set as well.

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b3b506f937b2de05a6203eb9c473d0150fb301a7 authored over 18 years ago

Reworked login and sudo. Skeletons for ITypes and IAdmin.

* #52 Sudo for attaching to other users.
* #44 IAdmin
* #86 ITypes
* #91 properties in logi...

23f5c134deb04f77a36ae3be33e2395afa8146a1 authored over 18 years ago

Added lifecycle.generate dependency for reload-db target.

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712dea7beae3c9ebe40dcfde02ef21c445cf9906 authored over 18 years ago

Updated URoiTest with model revisions. See #144.

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85d95687b183194ee3af44bf5bf41e2dace498e8 authored over 18 years ago

Initial design for #144.

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57fdadc166a2a508308581c6c531f9810c0248e4 authored over 18 years ago

Fixed #143 by moving `replacement` to `GraphHolder`

Also:
* Now using `HibernateOperations` in `UpdateFilter` for mocking.
* Made `IObject.FIELDS`...

0d187360cd5141e80cce3d7adff9782ef07ba2a1 authored over 18 years ago

Unit and integration tests separated. App deploys. Closes #64.

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cf285802742a090834541e11348cc54ab75eeaee authored over 18 years ago

Fixed #65 by moving properties to /etc. See ticket for details.

Minor bugs fixed while testing move.

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9e2b01dcb97ce4a8f791c0c7da67e4674dfdaf56 authored over 18 years ago

Adding "TIFF" to Format enums per ticket #126.

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dafe8cb4abb17d64d4cc0e011e180dc6f41a1424 authored over 18 years ago

Added example of setting default flag on GroupExperimenterMap.

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5c184a4c4fc1446b35d3b62d24a6899939f73671 authored over 18 years ago

Fixing tests. Related to HHH-1401, see #118.

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e418e6e3c79152e2d5d9692ec89ca14c4030c32d authored over 18 years ago

Reworking TestNG. Closes #100. Needed for #84.

* Includes patched testng jar (a debug version was in r676)
* Added testng-dep bsh.jar (remova...

f29a97275ab25f4abc627f0d61d7b284e999eb6a authored over 18 years ago

[Testing] Added exampleById test and fixed documentation in IQuery.

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22460347d78510bb2d76c507a78d775da9c90fc5 authored over 18 years ago

[Ticket #60] Fixed generated model objects for handling the update of unloaded collections.

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eef4310ce8fb52f5f36680f6a75673a482bacafc authored over 18 years ago

[Ticket #72] findByQuery now returns a single value or throws.

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04ab69e83ef42fd776ddd19d4e4c1ee742e6023f authored over 18 years ago

[Minor bugs] Unrelated problems fixed while testing IQuery

* Spring xml files with DTD in "wrong" location
* Added more exceptions to ejb-jar.xml (Needs ...

8f5c4689a1e68ac7c152d56d720d0c114bacbfe1 authored over 18 years ago

[Ticket #10] IQuery rewrite. Extensive changes.

* Method name changes. Propagated to all implementations.
Updated all using classes (*Impl a...

bdccadeebc033bf60c9b742d0724645a502e6799 authored over 18 years ago

[Ticket #37] Fixed eclipse issue. Now some self control is in order.

Specifically, eclipse now allows Java 5 in client code and Ant does
not. Please do a test "clean...

330671c7827092914a783a4d8da9c86512b66fca authored over 18 years ago

[Ticket #37] Modified all active tests to ''also'' use testng.

* JUnit 3.8 still active; available with <junittest/> target.
* omero-app has <test/> turned off...

420049af250b3852ac9e6c17fd8ef9b060da2948 authored over 18 years ago

[Task #36] .classpath, classpath.xml and pom.xml updated with testng.

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c5d4c63ad19f88661eeedff959f965927e947264 authored over 18 years ago

[Eclipse] Changing version to 3.0-TRUNK for eclipse .project files too.

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37614c378fb70dd1f6db22cba12c917e01d7ee71 authored over 18 years ago

[Build] Changing version to 3.0-TRUNK. Please change only in branches.

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1d243fc4fab5e86017f7fcf01ce853860e7eab37 authored over 18 years ago

[Merge] 619:634 /branches/omero3/omero-3.0-M1 --> trunk

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366b9d6597333bb8014ff37dfa4c94d59572ffb4 authored over 18 years ago

[Bug 644] Simple initial version of adduser target

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71ebfdaad9a75a8f01fe87aa821860344cc621b1 authored over 18 years ago

[Client] First Unit-of-Work checkin. (ome.client.Session)

* Most use cases covered.
* Simple Storage mechanims.
* Default ConflictResolver.
* No lazy load...

19080a3c0f2acfe9cdaf33b8d3c4901bc62c1f52 authored almost 19 years ago

[Build] Added JMock to top-level POM (and javadoc target).

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1555cd4f4f3468d6806c5eea1cea4fde4ead1d9e authored almost 19 years ago

[Fix] CGCPaths no longer broken.

* Bug was in missing Criteria.setProjection(Projection.property...
* Also fixed eviction (no lon...

f637b6a263d453e451d8aa50b692d2fbfbc296c5 authored almost 19 years ago

Documentation and cleanup.

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ac9bbda17ecf4aec42816171c9aae981b900cffe authored almost 19 years ago

[Common] Documentation and cleanup.

* Several package.htmls
* Removed old maven1 file.
* Added two more exceptions.
* ome/testing/da...

ecb9ee68c75364fd8dec72a52599af82e5bb4e65 authored almost 19 years ago

[Build] Disabling APITask.

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d56a4e3756d52497d193e3cacc0b9e87302b9843 authored almost 19 years ago

[Build] omero.class, re-arranging, documenting, etc.

* Now have omero.class working.
* All tools to /lib/tools.
* Added brief comments to *.propertie...

f0a5f701f5599217ade36a9bbe4daa48990e94b0 authored almost 19 years ago

[Build] Upping version number to 3.0-M1

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844414c80c14560a8e141af0b1547c999285a10e authored almost 19 years ago

[Build] Various clean ups.

* Reactivated check-system ant target.
* Removed maven system check.
* Fixed omero.properties.ex...

b035e1417086e2e153f7be434058f46025dbdf0c authored almost 19 years ago

[Bug] Fixed missing src entries in Eclipse classpaths.

git-svn-id: file:///home/svn/omero/trunk@555 05709c45-44f0-0310-885b-81a1db45b4a6

f74b72e35ce302827bd18c4617e645212d94f9f0 authored almost 19 years ago

[Documentation] Finally! (or, at least a start)

* "ant javadoc" now working.
* Various other small things.
* Hopefully now in gear.

git-svn-i...

1d721f89d3b534d2efa6c9f4ad4b01279e0cbdf6 authored almost 19 years ago

Oops. Need to distribute compile & test deps. Thanks, Jeremy.

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6ad57bcefd5be570fa89505627387422093cb1db authored almost 19 years ago

[Build] One further maven->ant step!

* Jars now in repository. (omero.properties.example updated)
* Cleaned up varous libs. (Caucho/c...

d7802511c13d3672978856998bf8e601586f2a7b authored almost 19 years ago

[Build] Maven/Ant madness!

* pom.xml now are purely dependency definitions.
* Now using maven-artifact-ant (jar is under an...

ac8af45c8c03eec634ad4deb4fce68bfa9e7369a authored almost 19 years ago

[EJB/client-side] Springification of login/initial context.

* Moved rendering interface (and deps) to common (see BUG 643).
* Moved ServiceFactory to common...

9b3e8c5e16bc408b588be50b9276c8a16f155a41 authored almost 19 years ago

[EJB3] Working server!

^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
* Currently only passwords missing. (default=ome...

26096263320a68c088bb4e7d11bbfbd6dcdc58e0 authored almost 19 years ago

[Filter] Adding before/do/afterFilter() methods and refactored.

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f29e5d68b8d4503c7c19bf0b1f3429ec0bcefc3c authored almost 19 years ago

[Model] Details now serializable and dynamic (putAt&retrieve)

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27603ca08062c2d4822e1b561cdfb57d68adf332 authored almost 19 years ago

Typo.

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2aa0eb40b692285631efec85c34808ce08af7f63 authored almost 19 years ago

[Context] Now using ContextSingleton... for BeanPostProcessing of OmeroContext

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7049b0e669e5c819fbcc021949148f405afa6db0 authored almost 19 years ago

[ExceptionHandling] Added new types. Need work.

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d5468f2d6c70a5bd6e03b1a4959bb843c4196764 authored almost 19 years ago

[Bug] ModelMapper didn't check for unloaded event on timestamp get.

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8b3dfc039111f18aaa9285d3a0bca5f86d621b00 authored almost 19 years ago

[Bug] Unloaded exceptions too strict on links.

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6b5761ab8c342774def23fc68ec1f7abfa1546f6 authored almost 19 years ago

[Bug] Not properly handling previously seen objects.

* This is a fairly complicated fix. We now keep track of
newly "merged" items in the "replacemen...

b5029e9adc1f0b19ed74e79687edfce3d8d09b1e authored almost 19 years ago

[Bug] Another NPE in generated code. Use iterators!

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6e84e585148d489fa4ec99db5196d4c926dec3bc authored almost 19 years ago

[Bug] NPE in find*Links. Must use iterateABC().

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fcb2297f7beb8db939cc1ea90a153fd071605f81 authored almost 19 years ago

[Bugs] Unlinking and linking now working. More methods on Model.

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fe02f79f65bf740478d990690d4a8fed585b1065 authored almost 19 years ago

[Bug] DataObject not copying version.

git-svn-id: file:///home/svn/omero/trunk@466 05709c45-44f0-0310-885b-81a1db45b4a6

59766c308f7ecdfe0498bc02c9d792394c8171b4 authored almost 19 years ago

[Bug] Reverse mapping got a face lift.

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bb9096a4bcf9d9e5593571e5d0df96ee4177e6a4 authored almost 19 years ago

[Bugs]

* Unloaded --> NPE in new Set methods.
* Using findCollection in ModelMapper is a no-no.
* An...

dfa4a4b690305ec08785c2097937226255c7bbcd authored almost 19 years ago

[Blocks] Documentation and a simple implementation of CBlock.

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99286d28fd14c68dffa67c54b16f9413fb54a5b9 authored almost 19 years ago

[DSL] Added addAllTo* and removeAllFrom* methods.

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20717d8707bee11f09d8681806f2b6d0fb44896f authored almost 19 years ago

[DSL/Model] All those methods you always wanted and more.

a.k.a. DB Review Final.

* Link reworking.
* Indexes working.
* Pseudo-closures. Fun, fun.
* Pr...

670d3e3d996c7dbc0b2501ad29472d00f3cd9f84 authored almost 19 years ago

[Refactor] Moved RenderingDef creation to ObjectFactory.

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2473c1d44a93b8791c4ac038617745294d602449 authored almost 19 years ago

[DSL/Model] DB Review Final.

* Added "listitem" element to DSL.
* Got List(s) working.
* Simple update test for RenderingDef....

543622979bf4277f0865de4d1b579a3e437e3e27 authored almost 19 years ago

[DSL/MODEL] Database Review I (partially implemented)

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38a65746d1f4087d1ae346bd2125f942db121a8f authored almost 19 years ago

[More testing...] Various fixes.

* Added flush to EventHandler (??)
* PojoOptions.getExperimenter() -> Long
* iQuery/iUpdate got ...

db47db5d6b3bb572bd66d794be650565339b7c5c authored almost 19 years ago

[Testing...] Clean up before moving on to PojosServiceTest

* OmeroContext now caches static instance for (possible) speed up.
* ObjectFactory in common pro...

e5e5a4e93e37f20bd8b71e3fdcaf1788e8697f7c authored almost 19 years ago

Default value for Details (new Details()) and setCtx(this)

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caa5d6bd7de4f16cdc2d48704fadc1712ff6408a authored almost 19 years ago

[Queries!] Extensive changes for Pojos Query

* DSL: Added filters to Hibernate mapping files.
* Common: Removed annotators from PojoOptions; ...

3a83ff560a1992b6b1d094effb763f9299ffebd6 authored almost 19 years ago

Get rid of it. (filters.ome.xml)

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09083177459467961f08bd549aae18f7a488ea3a authored almost 19 years ago

Changed filters.ome.xml to filters.hbm.xml.

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077819b4cfc7354075c902c1efbada5dd5d9db1e authored almost 19 years ago

[Model/DSL/Server] Enumerations and Links and Login (oh my!)

* Updated enumeration names. (XType->XYZ in most cases).
* Properties now have a reference to th...

60bfca0bf7463af61d00ee1e7391b56c8b4254b7 authored almost 19 years ago

[SPRING] Created new OmeroContext to handle configuration

* beanRefFactory.xml now contain hierarchical contexts
* simplifies client/ServiceFactory
* will...

9aef3b1f93aceef45626baa568c40167a23f41c3 authored almost 19 years ago

[API] Added ServiceInterface marker i/f for all of api

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d6c852c851a02cfa9ca30cee6c03e86804f185c3 authored almost 19 years ago

[Eclipse] Storing .settings (Need policy on these)

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c0220885a9abcaca6297b4110fc3d6173a2fa99d authored almost 19 years ago

[Proxies/Refactor] Moving CGLIB detection to Utils.

* ProxyCleanupFilter needs that info too.
* Unloading currently working.

...oh yeah, and some...

d83a47da12282d4ecfbf625e023933f7c5f09f9a authored almost 19 years ago

[API] New methods for IQuery/IUpdate

* Now all implementations there.
* Delete methods no longer return int.

git-svn-id: file:///h...

15295416491727a45fc0e568e29af98ca2c781f0 authored almost 19 years ago

[Pojos] Getting rid of null pointers and null classes in mapping.

* CGLIB is quirky!

git-svn-id: file:///home/svn/omero/trunk@396 05709c45-44f0-0310-885b-81a1db...

970b30f7b7f57195fb2c4f4e7422d5413cf20ca5 authored almost 19 years ago

[bugfix] $$EnhancerByCGLIB$$ in proxy classname hinders mapping

* added debug switches to ant javac to find it
* added test for the string and a new exception ...

524085c113b9445f69bddeb4a6c4858762684b4c authored almost 19 years ago

[BUILD] Add javac.{source,target} default/overrides

* common/client/shoola-adapter get override of 1.4
* lifecycle.xml get default of 1.5 (this is ...

ebcdb58b5a803a4c4800a735ef18d1c563789128 authored almost 19 years ago

[BUILD/POJOS] distribution/reverse-mapping

* added distribution process to build
now copies all needed jars to ${dist.dir}/repository

* ...

2a555508b138eed4b2d8e370030360e798605a06 authored almost 19 years ago

Fixing classpath problem with dom4j jar.

git-svn-id: file:///home/svn/omero/trunk@386 05709c45-44f0-0310-885b-81a1db45b4a6

fa1954d11c232cda89645d6bd1e23651c3eb663a authored almost 19 years ago

[BUILD] changing problematic hibernate-3.1 refs to 3.1.2

git-svn-id: file:///home/svn/omero/trunk@385 05709c45-44f0-0310-885b-81a1db45b4a6

c2d34b57654e7ec9370fce208dec177be3a105a4 authored almost 19 years ago

[MERGE/Pojos/Links] Trying to get IPojos working

================================================

[MERGE] from omero2/OME_2_5 -> trunk
* PojosIm...

385270fe9709f1decc710e4883845626b37a2213 authored almost 19 years ago

[BUILD] finalizing the ant build on clean checkout

* Velocity errors are now gone
* ddl.sql no longer drops. That must be done manually.

git-svn-...

1bfbf2950f99237ce215704cd58bb5aff96b63d6 authored almost 19 years ago

[Missingfiles] ok. I know, but this time it's not my fault.

* "build.xml" in common was written over by maven (argh)
* "build.xml" in server was ignored, b...

ad0b4ec8c82f0a110eb5db46880b975781f43c86 authored almost 19 years ago

[MERGE/BUILD/FIX/NEW] Various changes to trunk

==============================================

[MERGE] 217:375 from branches/omero2/OME_2_5 to t...

eacce962d8afc8d10f76501aafd6eb2ca2553318 authored almost 19 years ago