Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/ome/omero-guide-ilastik


https://github.com/ome/omero-guide-ilastik

use new method

9729038ec1f4b7ee252b74ac093c0ae662d941a2 authored over 4 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #14 from jburel/parallel

Parallel

7a6062ad0ce2b33f024006ce905895b891eaf6ab authored over 4 years ago by jean-marie burel <[email protected]>
improve print and save results as png (first plane)

e005827e06614bc4faf1f20d46a5707f2bb03569 authored over 4 years ago by Jean-Marie Burel <[email protected]>
use list comprehension

84ef6c63011609d185c043991fd0a055b5921723 authored over 4 years ago by Jean-Marie Burel <[email protected]>
flake8 file

c9acb685d1d369172e9808d944e2ca90177cd958 authored over 4 years ago by Jean-Marie Burel <[email protected]>
add doc to run ilastik in parallel

a81ab84620dc94d6e7f9975449d30105ab4b2af6 authored over 4 years ago by Jean-Marie Burel <[email protected]>
rename function

b7d4327ea7e0c392fd696880acd68e1cc6a6992d authored over 4 years ago by Jean-Marie Burel <[email protected]>
add example with local cluster

6853ba982be1bd4f130298ea6ecfbf8eae3bb6a9 authored over 4 years ago by Jean-Marie Burel <[email protected]>
add flag

e447e11c3cb012201572dffbc9a7643dcf4dacbd authored over 4 years ago by Jean-Marie Burel <[email protected]>
add progress bar

e7215d4f99fcee486f44eb83e92d745e966d804d authored over 4 years ago by Jean-Marie Burel <[email protected]>
analyze data using ilastik in parallel

05486cba010b071287e71dabf5a8543d7e5fe0ee authored over 4 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #13 from jburel/simplify

Simplify load of zarr data

349de736ccc71ef71ddaa09f0d1f158cea0985d5 authored over 4 years ago by jean-marie burel <[email protected]>
remove remaining mention of save

0b1ee3f0f41e587dffa10f31aed7f97327d1104b authored over 4 years ago by Jean-Marie Burel <[email protected]>
improve doc

a3f3248770c899ebb7e9e3fc947a80546a6ee470 authored over 4 years ago by Jean-Marie Burel <[email protected]>
remove Save probabilities message

573858ec33cd109f888919edbbff0c5758a9c01a authored over 4 years ago by Jean-Marie Burel <[email protected]>
use correct method to load data

0fdc63bd59092beb292ad4e4c6e5e3e55f2c8c50 authored over 4 years ago by Jean-Marie Burel <[email protected]>
remove import

1afac7cff7e474b5f3d9f8622279357beda6229f authored over 4 years ago by Jean-Marie Burel <[email protected]>
fix endpoint

caa631da90bd39c76bb70c944b9a6467de18600b authored over 4 years ago by Jean-Marie Burel <[email protected]>
flake8 scripts

9801c31df0060b486dd52702a0b1994fd38336b5 authored over 4 years ago by Jean-Marie Burel <[email protected]>
simplify loading

e507a0456ff7f1ce1c0357c078b5e14eaee7cc6b authored over 4 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #12 from jburel/travis

repo2docker in travis

dcb6a3fa74a7f163cc41dd198f43ec472b8e61ec authored over 4 years ago by jean-marie burel <[email protected]>
test installation in travis

b419ebb453e3e74d90c2ae03387b69687b4876bb authored over 4 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #11 from jburel/zarr

Zarr

9b91681528209a62faffbbc3e7d0e675d5fe4abe authored over 4 years ago by jean-marie burel <[email protected]>
review usage of expand user

13f6703ff8349cc2018c43aaed3725de2be4858b authored over 4 years ago by Jean-Marie Burel <[email protected]>
Update notebooks/pixel_classification_zarr_idr.ipynb

1ed2c060d6731739c16427e3158c50b95a062f91 authored over 4 years ago by pwalczysko <[email protected]>
Update notebooks/pixel_classification_zarr.ipynb

81dacff8893dd28cd65c1d86c62c7b0bd86262ca authored over 4 years ago by pwalczysko <[email protected]>
enable keepAlive

d870ddce175311fac080dbc8602bf3273523b062 authored over 4 years ago by Jean-Marie Burel <[email protected]>
remove save as zip zarr

45e26af88fe71c3f1fc553994a1abdc4dca9cc28 authored over 4 years ago by Jean-Marie Burel <[email protected]>
add info about dependencies

fc305bcd9490019ba32057a43d536ed17e22d330 authored over 4 years ago by Jean-Marie Burel <[email protected]>
add try/finally

f8808629d6cecb2c222890a51163061e2dd17119 authored over 4 years ago by Jean-Marie Burel <[email protected]>
add doc

12e3a35607700fa4b9c84336fa4170cd43e65e55 authored over 4 years ago by Jean-Marie Burel <[email protected]>
remove import

b1e8373f41a5c2e68a9ec28cf075c32f7d9254c8 authored over 4 years ago by Jean-Marie Burel <[email protected]>
switch to s3 ebi

0dde49e7c74367db4bfba6f87078cdc94c1d1b97 authored over 4 years ago by Jean-Marie Burel <[email protected]>
remove unused import

f4652e3cf3896630a044ed68995267879ccd99b2 authored over 4 years ago by Jean-Marie Burel <[email protected]>
change endpoint

2e34924a95cf202d91c897c56c9eea2debd3d3c1 authored over 4 years ago by Jean-Marie Burel <[email protected]>
minor edit

61489ffbf527e1385f9748b7160e3f4f955c60a7 authored over 4 years ago by Jean-Marie Burel <[email protected]>
check loading time

4ebb8475e071983efb057d2c3ecae8fd09994bea authored over 4 years ago by Jean-Marie Burel <[email protected]>
add idr specific notebook

00df64fd483f5b6c55c1928604dde7979f937dd5 authored over 4 years ago by Jean-Marie Burel <[email protected]>
fix doc

b970461ede3502be7816ec830a4604d93cc46ba1 authored over 4 years ago by Jean-Marie Burel <[email protected]>
add 3D view

f4976c1db8233acb33289c3e3177a7d131964b3e authored over 4 years ago by Jean-Marie Burel <[email protected]>
rename method

0c31a97e851be42be0074efa429f69ff8ee930b2 authored over 4 years ago by Jean-Marie Burel <[email protected]>
rename file

2039f0678f57109e68caea4c94b33232652c753a authored over 4 years ago by Jean-Marie Burel <[email protected]>
display result in notebook

a7a6c13acb9a370cc2c279b3497a436115c79554 authored over 4 years ago by Jean-Marie Burel <[email protected]>
add dependency

6941e019750ffb63af30aa1488e816bda31a6187 authored over 4 years ago by Jean-Marie Burel <[email protected]>
remove hardcoded value and use symlink

910fcd342d6e9f48044d9bf5be116d547681877c authored over 4 years ago by Jean-Marie Burel <[email protected]>
add notebook

0f7fb1a9fdd109499ab5f1d5e368005b55a404f0 authored over 4 years ago by Jean-Marie Burel <[email protected]>
add dependencies to read from s3

6a3e3618321a08401957b8ab9ebc763300d7afec authored over 4 years ago by Jean-Marie Burel <[email protected]>
read/write zarr

0940af63ce312c6e0b24b7639d6d27237d39539d authored over 4 years ago by Jean-Marie Burel <[email protected]>
install zarr

1f1d6cfc3f8de0708dd515d9651ffb6aedfef3c3 authored over 4 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #10 from jburel/scripts

scripts and doc re-organisation

9bacbc38fef05c7a82ea05f10499d061e6040b50 authored over 4 years ago by jean-marie burel <[email protected]>
minor edit

280ed73f68e51d0c8c505f94998e60db1ca777d0 authored over 4 years ago by Jean-Marie Burel <[email protected]>
add options

3edfb4fd5229803e32b05298d571b48de29b6113 authored over 4 years ago by Jean-Marie Burel <[email protected]>
add command

40648fdd1e05ed2f3159371c67b517739c01ffa4 authored over 4 years ago by Jean-Marie Burel <[email protected]>
review installation

7c9e61d875f70539285f83e08952cb7bcebf717b authored over 4 years ago by Jean-Marie Burel <[email protected]>
swap order

2a0f69ff755a2e9f7fe0cd4b3ced5e5fed82f9a5 authored over 4 years ago by Jean-Marie Burel <[email protected]>
fix link

cd57826d7fe31ed954c643e36edd6628222291f1 authored over 4 years ago by Jean-Marie Burel <[email protected]>
update doc

cac046f68152a7ab288773d939cca84cb9615d74 authored over 4 years ago by Jean-Marie Burel <[email protected]>
use new file name

3ecc69f39541089f73235f1b0ca60d530ac624ac authored over 4 years ago by Jean-Marie Burel <[email protected]>
rename

757fb6bb13dbf5d161acf20c9fb1d2fed0f40927 authored over 4 years ago by Jean-Marie Burel <[email protected]>
add doc for mitosis

7b4efa9430ee2e6377c2b74cffca7d5f69ad7640 authored over 4 years ago by Jean-Marie Burel <[email protected]>
use link to binder

2d3153d3e9bdeb699a3e591b7632157e7221c23e authored over 4 years ago by Jean-Marie Burel <[email protected]>
clean up

57dc51a6525305cac7219733d08dbd0863c77db4 authored over 4 years ago by Jean-Marie Burel <[email protected]>
use snippets from groovy script

8faecb0f48a93289515efdf5264f15fe8164a9b8 authored over 4 years ago by Jean-Marie Burel <[email protected]>
add marker

867db838d51817e0fead63349d560bdce768c71e authored over 4 years ago by Jean-Marie Burel <[email protected]>
fix error

15e7ebb593d4816b4f2965883ccfddd37981da3e authored over 4 years ago by Jean-Marie Burel <[email protected]>
add marker for doc

3ed2baaa235d36cb4cebeb5bea3ab09a0a478118 authored over 4 years ago by Jean-Marie Burel <[email protected]>
fix doc

21ab4f81cd50d75abe2c0bde987019f9bfd1e4b7 authored over 4 years ago by Jean-Marie Burel <[email protected]>
migrate example from training-scripts

251ae0d07eee40ec7e2c64bb3adf02bd304ac2b0 authored over 4 years ago by Jean-Marie Burel <[email protected]>
Merge branch 'filter' of github.com:jburel/training-scripts into scripts

5e8281e87788e1b8255199ccff0c66a64b3c4819 authored over 4 years ago by Jean-Marie Burel <[email protected]>
add marker

3c7973aa8493d306d3dca369630449f6c39c5854 authored over 4 years ago by Jean-Marie Burel <[email protected]>
re-organise the doc

eaf5ed2c099648cbb39546202ed4bbe98565e9f4 authored over 4 years ago by Jean-Marie Burel <[email protected]>
convert notebook into script

ead980a51f4bb3a0bae417cae4dc2af734aa8bce authored over 4 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #7 from jburel/binder

Binder

1b689fbe9e0b0052e48689444d06c3cc1a12fea7 authored over 4 years ago by jean-marie burel <[email protected]>
clarify count

0146e865e5b909c89553c09bc20c170336cb38ac authored over 4 years ago by Jean-Marie Burel <[email protected]>
remove import

2b0e7e7d57320de43dbcefc62923bf9e5d653122 authored over 4 years ago by Jean-Marie Burel <[email protected]>
print out z value during upload

a37c1b1ad182b99befda98c55810465fd887ab13 authored over 4 years ago by Jean-Marie Burel <[email protected]>
review import

a80ba3e677172c0409290a06c07bbd6153ed3d56 authored over 4 years ago by Jean-Marie Burel <[email protected]>
add doc

1886c600827d22751a1318494dfb99d2e02dae93 authored over 4 years ago by Jean-Marie Burel <[email protected]>
add binder back to readme

62194216a6331db4111ed211624c15554449ab8c authored over 4 years ago by Jean-Marie Burel <[email protected]>
add setup

47db46e6716bbb4b488cb794c3153d951d7d4a62 authored over 4 years ago by Jean-Marie Burel <[email protected]>
select the ilastik project to use

dd50c7d5c77350dd4650585cd37b3812af725ae7 authored over 4 years ago by Jean-Marie Burel <[email protected]>
install dependency

89e7e42bbb4b02ae1e4bcc065e21b5228da7653e authored over 4 years ago by Jean-Marie Burel <[email protected]>
fix output order

d7ddae2aa61b8c6fa539118d161a0e5938ac59e0 authored over 4 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #9 from pwalczysko/fix-walkthrough

Fix typos, improve text

7a484b3ada119246640e1bc97ff78539415ec860 authored over 4 years ago by jean-marie burel <[email protected]>
fix notebook

14c5e0df72c20807e40e7097b5d59fe6e847c697 authored over 4 years ago by Jean-Marie Burel <[email protected]>
Fix typos, improve text

00914842daedb40dc48d7370a8b92e14a0b46b2f authored over 4 years ago by Petr Walczysko <[email protected]>
use ilastik api

bb6d039e7822917cd6d5b0c16220c5cd2682643a authored over 4 years ago by Jean-Marie Burel <[email protected]>
update instructions

629be88e0add3f3cf571f9575e80e0a1ba693da9 authored almost 5 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #8 from pwalczysko/ilastik-followup

Add pointer to idr-analysis

3cb0d8a64d9ce40b6b91359db3c2fbb6f5ceaef3 authored almost 5 years ago by jean-marie burel <[email protected]>
Add pointer to idr-analysis

4a19a11177cced6b4fe046089f14133576a892b3 authored almost 5 years ago by Petr Walczysko <[email protected]>
remove binder for now

6a6ae6a49af878972ba9681e720ea8a0bfb8976d authored almost 5 years ago by Jean-Marie Burel <[email protected]>
update instructions

a8ab9ad75584e1d5b1d49e77153c051205088a30 authored almost 5 years ago by Jean-Marie Burel <[email protected]>
update path

d289bcd0a2d5d1ed1ae2f056e14f2ca0e4743409 authored almost 5 years ago by Jean-Marie Burel <[email protected]>
Merge branch 'filter-i' of github.com:jburel/training-notebooks into binder

9d51e96d5a51164bbe3ac3c2130178e674317e29 authored almost 5 years ago by Jean-Marie Burel <[email protected]>
move to notebooks

a8c24c4c4b67a1b288e55e1f21083948b02b5564 authored almost 5 years ago by Jean-Marie Burel <[email protected]>
chmod

dd8acc5fc66ea1117090b7186695e3db8643fa38 authored almost 5 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #6 from pwalczysko/fix-ilastik-links

Fix broken links in ilastik guide

a1e91f38130c43d71556e7f36df4963d700827ad authored almost 5 years ago by jean-marie burel <[email protected]>
Fix broken links in ilastik guide

26b3a055ee5bb5e6b76fb57c097d56e47eafdcb1 authored almost 5 years ago by Petr Walczysko <[email protected]>
remove hardcoded var

cbea80d1e5d1f034f4232ca5331d9d239f682fa2 authored almost 5 years ago by Jean-Marie Burel <[email protected]>
remove user name and password

3d31c3f65a4175c4a0606cec0814ec5b2bb60608 authored almost 5 years ago by Jean-Marie Burel <[email protected]>