github.com/ome/napari-ome-zarr commits | Ecosyste.ms: OpenCollective

Fix link to s3

e8ba9405e139f6d22e5f330a99ff3393025f4850 authored about 3 years ago by Petr Walczysko <[email protected]>

Merge pull request #24 from jni/patch-1

Update README with new URLs

30d3db7460ee8addaa4dce37379d5669463c40db authored about 3 years ago by Josh Moore <[email protected]>

Update README with new URLs

As suggested by @joshmoore in #23

3d1ffdf71b3fbc00408eb892b9dc975c5044ec2d authored about 3 years ago by Juan Nunez-Iglesias <[email protected]>

Merge pull request #18 from will-moore/colormap_renamed_to_color

colormap renamed to color

87639cd462b3c96d58a3e4e4a4384cdd40f68a47 authored about 3 years ago by Sébastien Besson <[email protected]>

Regenerate CITATION.cff

Generated using doi2cff update 10.5281/zenodo.5620852

3ed0f6989bfeb71405fbc780df290124905e0b75 authored about 3 years ago by Sebastien Besson <[email protected]>

Merge pull request #19 from neuromusic/jk/citation.cff

moves plugin citation info to citation.cff file

e47d1a31039c84f6913a6d2232bbceb0c9930811 authored about 3 years ago by Sébastien Besson <[email protected]>

updates to correct zenodo doi

9f901fbeff9223ab20c95bc9debe4806171080c2 authored about 3 years ago by Justin Kiggins <[email protected]>

moves plugin citation info to citation.cff file

de116d43b592b5d9d3a366bd88d6a8eb641532ca authored about 3 years ago by Justin Kiggins <[email protected]>

Keep both color and colormap keys

78a57e01ecb721c9e6d9b8c61c67c71f12295cb5 authored about 3 years ago by William Moore <[email protected]>

Rename label metadata key to color

b2125bcc104b35fcc9a99846582e8a68cff5603d authored about 3 years ago by William Moore <[email protected]>

Fixes URLs in the plugin description

9bd059055e667c62fa2dadd1a4298a545711fc71 authored about 3 years ago by Sebastien Besson <[email protected]>

Merge pull request #17 from will-moore/bump_ome_zarr_0.2.0

require ome-zarr>=0.2.0 in setup.cfg

79209b19cf75a1c53aab195907c85ee35a31dd2c authored about 3 years ago by Sébastien Besson <[email protected]>

require ome-zarr>=0.2.0 in setup.cfg

9cf3332d0956b7eb05047dc6aa871a841f04ede9 authored about 3 years ago by William Moore <[email protected]>

Merge pull request #16 from will-moore/squeeze_channel_axis_for_labels

Squeeze channel axis for labels

28c57a5ae8419c0cb6f722f16cf50c57c13e024f authored about 3 years ago by Sébastien Besson <[email protected]>

Add 2d image to several tests

7b9c89fc2a6a15c380073cde61008d66d2f7414a authored about 3 years ago by William Moore <[email protected]>

Merge remote-tracking branch 'origin/main' into squeeze_channel_axis_for_labels

12ac3344b8957ac6033df8596c716edfe2c89e48 authored about 3 years ago by William Moore <[email protected]>

Fix tests for data less than 5D

d2c7957cf6ac6bf358ae0b0d740ee3c61f54e89c authored about 3 years ago by William Moore <[email protected]>

Merge pull request #15 from will-moore/fix_colormap_single_channel_images

Fix failure to create Colormap for single-channel data

174e3cd4890b4e267847f145c0111674042c79fb authored about 3 years ago by Sébastien Besson <[email protected]>

Squeeze channel axis for labels

022a9571996243a3bc8128fff99a079492cfdfbd authored over 3 years ago by William Moore <[email protected]>

Fix failure to create Colormap for single-channel data

For single-channel data we remove 1 level of nesting of lists, so the enumeration breaks.
Need t...

16a7a2e4ff85cf1ac0152bb1dc578f64bb8d1fe5 authored over 3 years ago by William Moore <[email protected]>

Merge pull request #12 from will-moore/labels_properties_dict_of_lists

Labels properties are a dict of lists

be5ff0df2fbfb3c54b3803f8e8159a1804aa201e authored over 3 years ago by Josh Moore <[email protected]>

Add pooch to test requirements

Needed by from napari import conftest, since napari test deps aren't installed

ccb58f86e5c5c72eb75bd4f8290798b521473451 authored over 3 years ago by William Moore <[email protected]>

Labels properties are a dict of lists

edbf9abf32e9e9c4276db26ebb87df668bce6cee authored over 3 years ago by William Moore <[email protected]>

Bump to ome-zarr 0.0.22 for NGFF v0.3 support

25c3e86f1c93d01ecf3bb711f3d26a4701606c0d authored over 3 years ago by jmoore <[email protected]>

Merge pull request #9 from will-moore/v0.3_axes_metadata

Use 'axes' metadata to pick channel_axis

8ae04d17dc293cefb5a3b87f3bc15a10d5c79b0f authored over 3 years ago by Josh Moore <[email protected]>

Merge pull request #10 from joshmoore/colormap-change

Wrap colormap in vispy object

ad22a1cf10cf1c988e79110880858986c92e3ad1 authored over 3 years ago by Josh Moore <[email protected]>

Also copy metadata for labels

138dfb4a2702b8c2a18dcf373f390ae16479fc91 authored over 3 years ago by William Moore <[email protected]>

Only add known keys to napari metadata

If we simply pass the node.metadata directly to napari, then any change in ome-zarr-py to
add ke...

079b8c5795c9fd10b8be50d88b5b4052ade4498d authored over 3 years ago by William Moore <[email protected]>

Wrap colormap in vispy object

4f08a72b405d16140b2e1d92ef66fab894f65216 authored over 3 years ago by jmoore <[email protected]>

Use 'axes' metadata to pick channel_axis

aa355a44b1bc28307a75b0a2a5f12da2ca545f30 authored over 3 years ago by William Moore <[email protected]>

Merge pull request #7 from joshmoore/hub-meta

Update metadata for the hub launch

d7325e81ac39033ce766e18bbba8ac2f429dd944 authored over 3 years ago by Sébastien Besson <[email protected]>

Bump development status to beta

90d6de084983e4441ee430d75c56d314fe56b5bd authored over 3 years ago by jmoore <[email protected]>

Add twitter handle

07e8ef82230e7ccd646306a2ff30bf349602403d authored over 3 years ago by jmoore <[email protected]>

Pin napari-ome-zarr to >= 0.0.20

272bff76af835353f5be97c40fa02b4634c1564f authored over 3 years ago by jmoore <[email protected]>

Re-use org PYPI_PASSWORD

9d348b93e5b95db132ee2c909daefc724433fe2b authored over 3 years ago by jmoore <[email protected]>

Merge pull request #2 from joshmoore/cleanup

More migrations from ome-zarr-py

be252c37fe5da32d41c221507128f13caa6a1864 authored over 3 years ago by Josh Moore <[email protected]>

Merge pull request #3 from DragaDoncila/add-napari-description

Add `.napari/DESCRIPTION.md` for use on the napari hub

ccf58309a0a547cab96756f5c1835d7790dc7067 authored over 3 years ago by Josh Moore <[email protected]>

Update headings

84b31c3cf507c62668139de89dc9b543286a6f0c authored over 3 years ago by Draga Doncila Pop <[email protected]>

Tweak information about ome-zarr

5ca1e22feedbd7d1ec25dfa62f0f640432453968 authored over 3 years ago by Draga Doncila Pop <[email protected]>

Add link to gif

48e841c581fb37e215c8a7577775b867cf2c6109 authored over 3 years ago by Draga Doncila Pop <[email protected]>

Initial commit

fa03b851e309519aac9439e2cf97b2a9fd8f79cb authored over 3 years ago by Draga Doncila Pop <[email protected]>

Add 'usage' section to README

702fe9ccf6d37d76866cb01c3e251188ac124297 authored over 3 years ago by jmoore <[email protected]>

More migrations from ome-zarr-py

249744391e36773f0cc67a34885153c6639b2126 authored over 3 years ago by jmoore <[email protected]>

Fix the qt test

995f1689e4fa1063506ada3a5741c9a9b7cef805 authored over 3 years ago by jmoore <[email protected]>

Rename packages

cee0324481c54ce9d18bd7bf8c27902bffc04c7e authored over 3 years ago by jmoore <[email protected]>

Remove unused extensions

6101ca5fd086ea9a670e30d42eb304d0a0313456 authored over 3 years ago by jmoore <[email protected]>

Merge the filtered code from ome-zarr-py

3b6b2962955ee81010eafd5bf45d3f2ce4263c8b authored over 3 years ago by jmoore <[email protected]>

Re-instate visiblility via a property

c8f09d4a14e261bbe2cd7de6179e33046455b417 authored over 3 years ago by jmoore <[email protected]>

Fix 'colormap' key thanks to Will

8cf77daf15c1421e038c982d247febca111cdb2a authored over 3 years ago by jmoore <[email protected]>

Major API refactoring

The introduction of multiple types per node of the Zarr hierarchy
(e.g. multiscales AND labeled ...

4bed9bfb740cb9b03ccfc4b6475c3ac73981c4dc authored over 3 years ago by jmoore <[email protected]>

Update style and fill out well-formed docs

3f279080d78fbb643ec73d64193b7548202e1ab5 authored over 3 years ago by jmoore <[email protected]>

Fix recursive reading, info, and downloading

d1778c42f0f4a3da9bcbd4a0c6a878bd2ce607c7 authored over 3 years ago by jmoore <[email protected]>

More tests and bug fixes

b1f200a8f4a9f8eab6e7778ad7449bd2b4b2f78e authored over 3 years ago by jmoore <[email protected]>

Disable napari viewer test on non-OSX platforms

aff045f1a6df18ecf94f63aade6f669c73914802 authored over 3 years ago by jmoore <[email protected]>

Enfore mypy annotations on all definitions

eba7811caee881635872c56fa0620a5356d3a3dd authored over 3 years ago by jmoore <[email protected]>

Correct channel array for grayscale images

At least the current napari (perhaps previously as well), fails
if the metadata passed is an arr...

8faf6538144f08c2a99b1270002f56341ee9551a authored over 3 years ago by jmoore <[email protected]>

Deal with empty labels from astronauts

- replace test lookup for labels/coins
- don't write labels group if no label exists

f712b06bca90b3777320db5a7b86dbef75f683f8 authored over 3 years ago by jmoore <[email protected]>

Add isort as the first pre-commit step

4845761cb7e47b93ba4f7949605a5f9e55763d78 authored over 3 years ago by jmoore <[email protected]>

Enable make_test_viewer from napari

15c4536d0022d9b554c36c0533857b3b86f595b9 authored over 3 years ago by jmoore <[email protected]>

napari test requirement

Registering napari-conftest as a plugin in setup.py
makes a hard-requirement on napari. This PR ...

a00c6060b53d014b79226156739f6b070102fa88 authored over 3 years ago by jmoore <[email protected]>

Fix CLI tools incl. prefix stripping

7ab351a7351d2a3283935be636bdda73280c5be9 authored over 3 years ago by jmoore <[email protected]>

Change 'Layer' to 'Node'

89fc4abc53c1b8db9122634fe7cd33d84c695153 authored over 3 years ago by jmoore <[email protected]>

Remove existing content

a6c817cdc48603f7ba33fe88eb0dfb33ceef2644 authored over 3 years ago by jmoore <[email protected]>

Add ome-zarr dependency

0bdf6231ba5b84870e36f33b4756fa568eab4b7b authored over 3 years ago by jmoore <[email protected]>

initial commit

1f14fe3817ec681d9b8c93f2121907b039039b76 authored over 3 years ago by jmoore <[email protected]>