Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/ome/omero-blitz

Gradle project containing Ice remoting code for OMERO
https://github.com/ome/omero-blitz

bump plugins version

b137ea255f94ef8c48bd84a3c13b274a56bb3abd authored over 3 years ago by Jean-Marie Burel <[email protected]>
pin version

09fd04ddf4843da935d21966f47af9412b554fc0 authored over 3 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #115 from jburel/repo

use mavenCentral

69f203c512016cd590ba1d20cde2fd61b7fcf51f authored over 3 years ago by jean-marie burel <[email protected]>
use mavenCentral

71c916b739ef21f51f135a0c8adf3b6ab208cf2c authored almost 4 years ago by Jean-Marie Burel <[email protected]>
use mavenCentral

efc0d3878991bb855025fd9c02865c16c6254f6b authored almost 4 years ago by Jean-Marie Burel <[email protected]>
build with snapshot

e72a730de9fd36e2fcef8831c40083f22a844881 authored almost 4 years ago by Jean-Marie Burel <[email protected]>
build with gradle 6

ac14998cd1bbf4fa953fd53741b4aa2b9837b877 authored almost 4 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #113 from jburel/actions

Actions

5d27e4771af5c4c457464090edb5b450d1c11e1d authored about 4 years ago by Sébastien Besson <[email protected]>
use 5.2.1

192df2597d09b5f0402f5e557c92acbe90eae975 authored about 4 years ago by Jean-Marie Burel <[email protected]>
remove travis

01555f5cd8abd89cc423e8f39a1f073523514919 authored about 4 years ago by Jean-Marie Burel <[email protected]>
add badge

6f38362f42b8a54e3daa9d08faa6c784ad4353b3 authored about 4 years ago by Jean-Marie Burel <[email protected]>
adjust to match template

2ae121e445e2c2541ce67c7cf2d831f6cd27d48e authored about 4 years ago by Jean-Marie Burel <[email protected]>
add actions

e2443cf38b339abec3e8ae0daa42c13488f6b337 authored about 4 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #111 from mtbc/snapshot

Increment to snapshot of next version.

37765782576edacac24968870181ce63855abc82 authored over 4 years ago by Mark Carroll <[email protected]>
Increment to snapshot of next version.

38166c7903d364f5d8d48f9610c1ed6143791527 authored over 4 years ago by Mark Carroll <[email protected]>
Merge pull request #109 from mtbc/changelog

Prepare changelog for releasing OMERO 5.6.3.

4f68b4b935883dcd2eb53b9d4b1bb9e3193f3216 authored over 4 years ago by Mark Carroll <[email protected]>
Merge pull request #110 from mtbc/dependencies

Prepare build for releasing OMERO 5.6.3.

6618aadc5ac23a9ce466ac063d2fab97432d7fcf authored over 4 years ago by Mark Carroll <[email protected]>
Prepare build for 5.5.8 release.

731604d464e85d172dc6892e55c143401999698e authored over 4 years ago by Mark Carroll <[email protected]>
Update changelog for 5.5.8 release.

9084a8bc5f1ec41fcf115df3c91590142247ba2c authored over 4 years ago by Mark Carroll <[email protected]>
Merge pull request #108 from jburel/ice_protocols

Add support for multiple Ice TLS protocols

beab73fb084391b52c1da0e36c93d214dbd252c4 authored over 4 years ago by Josh Moore <[email protected]>
Add support for multiple Ice TLS protocols

bf570bd91242d2ff4ce60e29348c3f4534246f7d authored over 4 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #100 from mtbc/deep-copy

Have DuplicateI able to handle underlying files

4f4c21b6c541f22029e1a90ad7e512ec3805d5c2 authored over 4 years ago by Josh Moore <[email protected]>
Create parent directories for new files beyond managed repo.

see AbstractFileSystemService.createSubpath

a9be099c6d9c6608c030ea1595c99051dbc3d52a authored over 4 years ago by Mark Carroll <[email protected]>
No need to clutter INFO-level logging with a non-event.

0e53532d71c9563f141a17ef0ac94e83fc6bbe5f authored over 4 years ago by Mark Carroll <[email protected]>
Refactor duplicateUnderlyingFiles to report new disk usage.

e2eb9beac6576335c1ec16b7b69b85cb8b31039c authored over 4 years ago by Mark Carroll <[email protected]>
Have DuplicateI retrieve beans from application context.

bb6e81436942106a2722243dbc7ab32f9f062624 authored over 4 years ago by Mark Carroll <[email protected]>
Revert changes to cmd factory.

8ce9a56b2ec1bb14cd8f3e6518a1fde00723d907 authored over 4 years ago by Mark Carroll <[email protected]>
Create directories owned by root without being full admin.

e98551e310e7a3c790e53834fc341f4a70526a7c authored over 4 years ago by Mark Carroll <[email protected]>
Merge pull request #101 from mtbc/repo-fileset-bugfix

Fix fileset ID lookup among managed repository processes.

a986bd3b40de7adc4e18632fd72d99f756baa25b authored over 4 years ago by Josh Moore <[email protected]>
Merge pull request #102 from mtbc/repo-cleanup

remove PublicRepositoryI.DEFAULT_SKIP

ef9f1719672b7fb4c87f44d160d4af5dc93cd0c5 authored over 4 years ago by Josh Moore <[email protected]>
Fix fileset ID lookup among managed repository processes.

dd558744fc1f4dc2e5f27fbc900c352149ed04e2 authored over 4 years ago by Mark Carroll <[email protected]>
remove PublicRepositoryI.DEFAULT_SKIP

It is non-trivial, private and unused.

3304f0f31bab3e89059622b305fa204fdb905545 authored over 4 years ago by Mark Carroll <[email protected]>
Have DuplicateI handle filesystem too via hooks into repos.

30146a5aa8feb1d49254df0c9fc8caea9fc74b3b authored over 4 years ago by Mark Carroll <[email protected]>
Provide efficient means to apply a set of prefix changes.

Needed for fixing paths from old fileset to new duplicate.

fd61f42f2fce7244c60b4e38fc48eb770c3b5bbc authored over 4 years ago by Mark Carroll <[email protected]>
Make FsFile instances comparable.

510115633eaf5ba88ae9dc373815f06038aaaaa7 authored over 4 years ago by Mark Carroll <[email protected]>
Inject managed repo and filesystem services into DuplicateI.

3bb19b859c79c4883f416ab8a8b34e756294fe0f authored over 4 years ago by Mark Carroll <[email protected]>
Inject security system into managed repository.

e93f784df309db64ad0d70515a8750fd7775ad84 authored over 4 years ago by Mark Carroll <[email protected]>
Inject managed repo impl and files service into cmd factory.

514fd288f3feea061a21508e34c18232e257955e authored over 4 years ago by Mark Carroll <[email protected]>
Add PublicRepositoryI.rootPath for getting the repo's root.

7f2497a6c003fa2fe6422133dff00a3816579203 authored over 4 years ago by Mark Carroll <[email protected]>
Have FsFile interoperate with Java core Path, not just File.

2dd5fe7dd5c253ba3b11a8ddc5ead0168c6cb31e authored over 4 years ago by Mark Carroll <[email protected]>
Adjust duplicate graph policy rules to include files.

Also removes a couple of unlikely, tricky legal targets.

10cee410dab98655376679f06a07e6096428dcb0 authored over 4 years ago by Mark Carroll <[email protected]>
Merge pull request #97 from mtbc/common-test-dep

Bump test dependency.

92c322679c629319861cd727b407c62fb4f0acd0 authored over 4 years ago by Sébastien Besson <[email protected]>
Bump test dependency.

fb6e6b6936f51f863bbdcda022e72154ed6d32c6 authored over 4 years ago by Mark Carroll <[email protected]>
Merge pull request #96 from mtbc/CLI-importer-support

Update help links for CLI importer.

57382f66f34e2c74dc03f7bbfa826c9376e73e38 authored over 4 years ago by jean-marie burel <[email protected]>
Use forum redirection link.

suggested by @jburel

3564fa82d2b23341181407f9ad62b98362ef3978 authored over 4 years ago by Mark Carroll <[email protected]>
Update help links for CLI importer.

4070d4ac6e4631bb027ae89f0571e35dfd74ede0 authored over 4 years ago by Mark Carroll <[email protected]>
revert to snapshot

a6ca00492455784ac0c6698228e8fab343b2681b authored over 4 years ago by Jean-Marie Burel <[email protected]>
bump omero-server version

ca3fde9b1bc316bf20f70271ddbb657a2378d65e authored over 4 years ago by Jean-Marie Burel <[email protected]>
add entry for 5.5.7

08dfa701e742b951e3891ed4b0a1b6ede7de8abf authored over 4 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #93 from jburel/cred_log

info in log

10f15c5b157751cf98032a2eb6386cb8cef777a9 authored over 4 years ago by jean-marie burel <[email protected]>
Merge pull request #86 from jburel/test_review

Test review: remove junit

c2f8a728b2ee2e351fd35fbf6179188589c609d6 authored over 4 years ago by jean-marie burel <[email protected]>
Merge pull request #94 from mtbc/group-sudo-import

Fix import-as by group owners.

523fceab0f8479640bdf4e0abc964aae803d80ef authored over 4 years ago by Josh Moore <[email protected]>
Avoid retrying what is effectively the same query.

ef6a84fe2ed2c861d275e73cc57b628f8b60e0d1 authored over 4 years ago by Mark Carroll <[email protected]>
format id

36ee66b4e5018208d37de1f0c2ab9d20d3a4fbc9 authored over 4 years ago by Jean-Marie Burel <[email protected]>
Prevent repeated security violations with failure to import.

0378edc08c1329c8eee9a6e4684d6473274b078d authored over 4 years ago by Mark Carroll <[email protected]>
To verify upload fall back to without all-groups context.

66d6a36562193292eb1ec67ec07a188e5e7a931e authored over 4 years ago by Mark Carroll <[email protected]>
Have PublicRepositoryI.persistLogFile return proxy object.

aaedf5c7419c734ef35f075197beca4cb2f2e55e authored over 4 years ago by Mark Carroll <[email protected]>
Merge pull request #90 from melissalinkert/roi-set-name

Implement setROIName in OMEROMetadataStoreClient

a1dc193591a12c1df9ed445fe135acfc23a723fb authored over 4 years ago by Sébastien Besson <[email protected]>
do not register the id

e9eb485babab61047eca6a50a94264e48eaece67 authored over 4 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #89 from mtbc/tighten-query

Have security check limit file query by fileset ID.

f673091ccef51259eeff4b5ad9c512844884eb8a authored over 4 years ago by Josh Moore <[email protected]>
Implement setROIName in OMEROMetadataStoreClient

583b8b87b73aff859f45b94dfe3517db87e737d3 authored over 4 years ago by Melissa Linkert <[email protected]>
Add assurance about expecting exactly one fileset.

08644207000fccffcc8ac3e9d9a855e6de94af1a authored over 4 years ago by Mark Carroll <[email protected]>
Add DISTINCT to query for extra assurance.

e31ebe2ce340c058dd230c333a768c030c5e36cc authored over 4 years ago by Mark Carroll <[email protected]>
Have security check limit file query by fileset ID.

2eac49181c2f171f42514160cb24b41fed40d0b4 authored over 4 years ago by Mark Carroll <[email protected]>
Merge pull request #85 from mtbc/reset-password

Have reset password use SQL to bypass 2019-SV3 restrictions.

d2ce7bdefca82ebd20a4e8a4cca078b10089ebf2 authored over 4 years ago by Mark Carroll <[email protected]>
Drop implementation(omero-model) from build.gradle

548295ae68f7e7049a2ea4feed91fb52351dea2e authored over 4 years ago by jmoore <[email protected]>
Depend on omero-model 5.6.0 for SqlAction additions.

67fad3e9a2001de0322fb6e4a06065cc296f2a88 authored over 4 years ago by Mark Carroll <[email protected]>
remove usage of junit

c8c17290af1e0bbe5d946ad064cc62b40660f320 authored almost 5 years ago by Jean-Marie Burel <[email protected]>
Have reset password use SQL to bypass 2019-SV3 restrictions.

086ebcf542aa09f64c9ab50812dc2dc93bb27e1b authored almost 5 years ago by Mark Carroll <[email protected]>
remove usage of junit

013919c7c508a65c787b6b643217e1fe891f6ecc authored almost 5 years ago by Jean-Marie Burel <[email protected]>
remove usage of junit

daeaac737170ddd92957f381c20cf858eb43e4c0 authored almost 5 years ago by Jean-Marie Burel <[email protected]>
close resources

8eb5d71229388d81c4e3e73695e7a1ee4ad4ebf5 authored almost 5 years ago by Jean-Marie Burel <[email protected]>
revert to snapshot

75c420e9583e85e25dbfd3d5260152061a6d6584 authored almost 5 years ago by Jean-Marie Burel <[email protected]>
OMERO.server 5.6.1: security vulnerability fixes

9a0bfb76167d21137548b192f4f9fe54be067e3c authored almost 5 years ago by jmoore <[email protected]>
Merge pull request #83 from mtbc/changelog

Update changelog for v5.5.6 release.

d680bcba1e762d65b56fce6c37fd839c8d136dcb authored almost 5 years ago by Mark Carroll <[email protected]>
Add further PR to changelog.

b3a25ad0042f7e1e35b6e658f69f3d543e182bf7 authored almost 5 years ago by Mark Carroll <[email protected]>
Add further PR to changelog.

9e3d950d25560ddbec3a7b58f6ac6132e4a71f09 authored almost 5 years ago by Mark Carroll <[email protected]>
Update changelog for v5.5.6 release.

e8783fe174c7fcd0117f001da1c2b5fe753ffbe6 authored almost 5 years ago by Mark Carroll <[email protected]>
Merge pull request #78 from jburel/version-name

Name in log

f22824dccc1fcb10f94f8e0ad6794c86f3756e16 authored almost 5 years ago by Mark Carroll <[email protected]>
Update src/main/java/ome/formats/importer/ImportConfig.java

Co-Authored-By: Mark Carroll <[email protected]>

8be4397a9a40eadf9f5fdcc361072e4c66eda6af authored almost 5 years ago by jean-marie burel <[email protected]>
Merge pull request #82 from mtbc/AdminPrivilege-GraphModify2

Document light admin restrictions on graph operations.

74e870a678a2888189883ceb509a5defaa0eaf01 authored almost 5 years ago by Josh Moore <[email protected]>
Can link ExperimenterGroup reference in documentation.

633250cbcfe4388c9710faec5f7ee706e54cab67 authored almost 5 years ago by Mark Carroll <[email protected]>
Document admin privilege restrictions on graph modification.

7cb283688aedab164896fe74536c33e3ef337f57 authored almost 5 years ago by Mark Carroll <[email protected]>
Merge pull request #81 from jburel/test_logging

unit test

e4572afb52de0581d7909584e2b4c2c35934c437 authored almost 5 years ago by jean-marie burel <[email protected]>
display test output in console and do not cache

e907766f9d902fba577422bcd508dc8fff4d5069 authored almost 5 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #80 from chris-allan/session-timeouts-and-agents

Expand user session creation abilities

20c0afbf688c527bf15276e3ed11c67f3caaee22 authored almost 5 years ago by jean-marie burel <[email protected]>
Handle null values

9bf8fc23cb389821e06794c8aec585a4b62f9972 authored almost 5 years ago by Chris Allan <[email protected]>
Expand user session creation abilities

A system wide, configurable maximum time to idle and time to live is now
in place. Regular user...

23b9161fb2187d7059e8522b8ecd67b22423c8ef authored almost 5 years ago by Kevin Kozlowski <[email protected]>
be more explicit in name

3ab24dce881e8bfd82b1df2014480549477f29b9 authored almost 5 years ago by Jean-Marie Burel <[email protected]>
revert to snapshot

69126c6ee9512884025a800ee1cf4f22a354d6fc authored about 5 years ago by jmoore <[email protected]>
Bump to 5.5.5 with changelog

4c96fd202f1a5592731d6dcd84afd6f40773eb6a authored about 5 years ago by jmoore <[email protected]>
Merge pull request #76 from joshmoore/units-5.6

model: Handle infinities in generated conversions

d3a9a008a8c516b993ae3bdf4cd23057b6109ec6 authored about 5 years ago by Josh Moore <[email protected]>
Merge pull request #65 from joshmoore/import-keep-alive

cleanup and expose import keep alives (see #64)

55563ec957f8d0225b6a53a1e30c9535b931cb57 authored about 5 years ago by Josh Moore <[email protected]>
units: improve error handling on conversion

d7e511eebf12b079ed74cafa5cf14075cf0714dc authored about 5 years ago by jmoore <[email protected]>
Merge pull request #75 from joshmoore/drop-bin-omero

Remove bin/omero references

76072360e19509a66a38a97b702a36e34bc3581f authored about 5 years ago by Josh Moore <[email protected]>
Update src/main/resources/omero-blitz.properties

Co-Authored-By: Mark Carroll <[email protected]>

bc20e9ce896e1536e38cbbe271fd51618539d055 authored about 5 years ago by Josh Moore <[email protected]>
Handle NaN as well as Inf

d9faf248eaef114ec4de32718494eeb66dc8ea63 authored about 5 years ago by jmoore <[email protected]>
Merge pull request #72 from joshmoore/close-tables

Throw early on null tablePrx

120ee5eff187c1e84b80d38d3d3b29b3c3c89628 authored about 5 years ago by Josh Moore <[email protected]>
Revert 'volatage' typo

6ad646b48cc7bd4441085a76aca8f4b52a8dee24 authored about 5 years ago by jmoore <[email protected]>
model: minor cosmetic fixes

f9872eb534e7cb003d306232ef3b3f252f875e8a authored about 5 years ago by jmoore <[email protected]>