Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/ome/ome_zarr_test_suite

Test suite of reader and writer implementations
https://github.com/ome/ome_zarr_test_suite

swap order

fdf91f36ff15ef657a352339f8537a5ef27a1b59 authored about 3 years ago by Jean-Marie Burel <[email protected]>
add missing dependencies

a5aa39a3a6a7802ec4f1e6f65d0c25e74c4bc8df authored about 3 years ago by Jean-Marie Burel <[email protected]>
fix init issue

7a796185e2d70284a3596f7e9222098be6182f63 authored about 3 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #24 from ome/pre-commit-ci-update-config

[pre-commit.ci] pre-commit autoupdate

1a8356c0a6372d3fecd8318aeae35110e45ee7fb authored about 3 years ago by Sébastien Besson <[email protected]>
[pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/PyCQA/isort: 5.9.3 → 5.10.0](https://github.com/PyCQA/isort/compare/5.9.3...

972559b6be5f82b76f4635a4646d63aa83a4e82d authored about 3 years ago by pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
init env

e3caa6b727474b10327f82f76d35d5b50dc8c6b8 authored about 3 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #22 from ome/pre-commit-ci-update-config

[pre-commit.ci] pre-commit autoupdate

1465f0a97b08c4b8f87662ce9cc6730b1c161c74 authored about 3 years ago by Sébastien Besson <[email protected]>
[pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/psf/black: 21.9b0 → 21.10b0](https://github.com/psf/black/compare/21.9b0....

ded1321e23bada2b208311ffede923176bf328e7 authored about 3 years ago by pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
fix name of secret

d0121d9b4c10a0a47a5b2e2f2f65ab0a5a50d51a authored about 3 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #18 from jburel/repo_dispatch

Repo dispatch

bcd7e2cfa55a6e00f4072729ae416f658c826cae authored about 3 years ago by jean-marie burel <[email protected]>
use variable

a30af52cfa26146b80aec8aedbf03dec1e56a8b3 authored about 3 years ago by Jean-Marie Burel <[email protected]>
review explanation

72f1299e4812d9e5aa27513348d8b46437f544f0 authored about 3 years ago by Jean-Marie Burel <[email protected]>
add bug label

cb14a8f00dd8b7cc752a132837e63bd3c155e93b authored about 3 years ago by Jean-Marie Burel <[email protected]>
add creation of issue on failure

7b69dc43e9170edd2e318ad92d51c7bcb12fb487 authored about 3 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #20 from ome/pre-commit-ci-update-config

[pre-commit.ci] pre-commit autoupdate

b7d177fa72f5d711ef3760d0e713b516e27b1bb9 authored about 3 years ago by Sébastien Besson <[email protected]>
[pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/asottile/pyupgrade: v2.28.0 → v2.29.0](https://github.com/asottile/pyupgr...

51990f2790037aa953a868c3ba7fea28d65e2456 authored about 3 years ago by pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Do not post event back to repo

49677a2bf8f9f937c2b07225d809fd1f6bfd6795 authored over 3 years ago by Jean-Marie Burel <[email protected]>
fix formatting

ba24f613e43fea3cad7df1fdb51f317d94c71bed authored over 3 years ago by Jean-Marie Burel <[email protected]>
Remove ref to perso repo

7da0784b5a02eb452dca4b267307d25411350265 authored over 3 years ago by Jean-Marie Burel <[email protected]>
add script to turn test on/off depending on the repo posting event

12dab2ba07c0ac7066e1bc808d30db2158d8ec20 authored over 3 years ago by Jean-Marie Burel <[email protected]>
send comment

1ead12c28eb76c280d78b9ad4afcd04a7d2e1d34 authored over 3 years ago by Jean-Marie Burel <[email protected]>
handle repository dispatch

9b099f6b3779b14d67b844d72653b84052b1e34d authored over 3 years ago by Jean-Marie Burel <[email protected]>
adjust script to add support for other repo

f1e4823c12f953adda78a242d6d760f17afd96f3 authored over 3 years ago by Jean-Marie Burel <[email protected]>
use skip flag for turning off tests

9fe61e1c00348bbe2287bddf76508e3d35fcee35 authored over 3 years ago by Jean-Marie Burel <[email protected]>
Merge pull request #19 from ome/pre-commit-ci-update-config

[pre-commit.ci] pre-commit autoupdate

c311e4aab262b5807d5c5b7c1fa7daebb58f4d22 authored over 3 years ago by Sébastien Besson <[email protected]>
[pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/asottile/pyupgrade: v2.26.0 → v2.28.0](https://github.com/asottile/pyupgr...

7aa0dd43c990458361c392d8a037701dd31a0dd4 authored over 3 years ago by pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Merge pull request #17 from ome/pre-commit-ci-update-config

[pre-commit.ci] pre-commit autoupdate

4b86c7c1c041994bdd304e9d67f2964b181df097 authored over 3 years ago by Sébastien Besson <[email protected]>
[pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/psf/black: 21.8b0 → 21.9b0](https://github.com/psf/black/compare/21.8b0.....

857d355e7fa582c361e72c9cbe6feb9baaa48e88 authored over 3 years ago by pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Merge pull request #15 from ome/pre-commit-ci-update-config

[pre-commit.ci] pre-commit autoupdate

dfe3efe136ff595add5ac9e82f9ee6e742b07ad2 authored over 3 years ago by Sébastien Besson <[email protected]>
[pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/asottile/pyupgrade: v2.25.0 → v2.26.0](https://github.com/asottile/pyupgr...

7ed64f4e2902058e5497203dd172e17b2b2cd1c5 authored over 3 years ago by pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Merge pull request #13 from ome/pre-commit-ci-update-config

[pre-commit.ci] pre-commit autoupdate

d08c0cc56d479e116a6ac8751fd607aba3c66dea authored over 3 years ago by Josh Moore <[email protected]>
[pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/psf/black: 21.7b0 → 21.8b0](https://github.com/psf/black/compare/21.7b0.....

666a016a58a2cca81f5afe65b637d0827a138b30 authored over 3 years ago by pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Merge pull request #11 from will-moore/version_0.3_sample

Version 0.3 sample

7589c991bcefb74e447649ef501fd15fff6b95c1 authored over 3 years ago by Josh Moore <[email protected]>
Merge pull request #12 from ome/pre-commit-ci-update-config

[pre-commit.ci] pre-commit autoupdate

462d3a999a20d1f5cb1dbf52fac7217caa613c4e authored over 3 years ago by Josh Moore <[email protected]>
[pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/asottile/pyupgrade: v2.23.1 → v2.23.3](https://github.com/asottile/pyupgr...

4c0cc96d4083c69c7535a52ff1663a4485affa16 authored over 3 years ago by pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Not all test data is size 64x64. Don't assert that it is

80e9571054cbebde736df0233b3dbb9b33fa2c11 authored over 3 years ago by William Moore <[email protected]>
Add data/64x64-fake-v0.3/0 to sources.yml. checksum checks data.shape

b88ecaa7dd15c8056f5de8f16a1e1309545df897 authored over 3 years ago by William Moore <[email protected]>
Add data/64x64-fake-v0.3 sample zarr

8fd3b5b67a3973d889bffa4c2bc98b8ea695277c authored over 3 years ago by William Moore <[email protected]>
Add local test running info to README

a7e5890b5b84a42b5deb55b791de885f91260ceb authored over 3 years ago by William Moore <[email protected]>
Merge pull request #9 from ome/pre-commit-ci-update-config

[pre-commit.ci] pre-commit autoupdate

34f23de7ac77501df97826bfe6100c478731a2bb authored over 3 years ago by Josh Moore <[email protected]>
Add types-pyyaml dependency

b25882749d6c52992beff08642751e75a4bf48aa authored over 3 years ago by jmoore <[email protected]>
Merge pull request #5 from dgault/zarr-repo-config

Add BF configs for Zarr samples

4c49616d050fecf82f7d4d5e20a407ecc820835c authored over 3 years ago by Josh Moore <[email protected]>
[pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/PyCQA/isort: 5.8.0 → 5.9.3](https://github.com/PyCQA/isort/compare/5.8.0....

81cb558c3b5e56ff47b29e5917a14d81f47cb462 authored over 3 years ago by pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Merge pull request #8 from ome/pre-commit-ci-update-config

[pre-commit.ci] pre-commit autoupdate

96ea29dd9421148da5c04081fca11680e384b80a authored over 3 years ago by Sébastien Besson <[email protected]>
[pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/psf/black: 21.5b1 → 21.5b2](https://github.com/psf/black/compare/21.5b1.....

a421d7aa004768ce12de27f365a434ad215e940f authored over 3 years ago by pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Merge pull request #7 from ome/pre-commit-ci-update-config

[pre-commit.ci] pre-commit autoupdate

e48e43089656d0f58c19f6433c08840c8ad9caf2 authored over 3 years ago by Josh Moore <[email protected]>
[pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/asottile/pyupgrade: v2.16.0 → v2.18.2](https://github.com/asottile/pyupgr...

2f9f6f5bed4f129399365f95db85c18c61bbbb59 authored over 3 years ago by pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Merge pull request #6 from ome/pre-commit-ci-update-config

[pre-commit.ci] pre-commit autoupdate

260ed7a4da95d0d29ae5d620b669f70e8bc93c89 authored over 3 years ago by Sébastien Besson <[email protected]>
[pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/asottile/pyupgrade: v2.15.0 → v2.16.0](https://github.com/asottile/pyupgr...

54aba9e55427eb43cbb3438eef6103ccef2f5d9b authored over 3 years ago by pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
[pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

55b9051209f992ac861e7533c5c66d4ded1fb83b authored over 3 years ago by pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Add Bio-Formats repo config

e69130944c1fe36c1f7e62ee59c7295929827738 authored over 3 years ago by David Gault <[email protected]>
Add Bio-Formats repo config

6ed345dc782d3aa5235ab3c97d01762d591bf8e6 authored over 3 years ago by David Gault <[email protected]>
Merge pull request #4 from ome/pre-commit-ci-update-config

[pre-commit.ci] pre-commit autoupdate

d5926d1a7b91fd2a31e22d232d55ea7eb7506fd5 authored over 3 years ago by Sébastien Besson <[email protected]>
[pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/psf/black: 21.4b2 → 21.5b1](https://github.com/psf/black/compare/21.4b2.....

50a9d3cc5a76195c942d97331c45d82771ab3c6e authored over 3 years ago by pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Merge pull request #3 from ome/pre-commit-ci-update-config

[pre-commit.ci] pre-commit autoupdate

4786106b07d27ad7ef11d64da6afc22ed85d60ee authored over 3 years ago by Josh Moore <[email protected]>
[pre-commit.ci] auto fixes from pre-commit.com hooks

for more information, see https://pre-commit.ci

10f03c33234d4a384dfcd2701cb768e63b71f60c authored over 3 years ago by pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
[pre-commit.ci] pre-commit autoupdate

updates:
- [github.com/asottile/seed-isort-config: v1.9.3 → v2.2.0](https://github.com/asottile/...

6c93c7c12b26cdc703d44308234ac6cdc6961184 authored over 3 years ago by pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com>
Merge pull request #2 from joshmoore/gha

GitHub Workflow

2e25a1b3a9bc8211255bed55e4b64375e456527e authored over 3 years ago by Josh Moore <[email protected]>
Use released versions

06d27e76cd86838cf88f3ea0456afab7b67c003b authored over 3 years ago by jmoore <[email protected]>
Revert "Move to self-hosted runner"

This reverts commit 192589fe9274038099106928a4d92a4a146932d5.

9388d57833fbb82056924ad1e2edac88ba0238be authored over 3 years ago by jmoore <[email protected]>
Apply suggestions from J-m

7e0b7ae7f60a7d46cb3f5e6d83b07cfc907a02cf authored over 3 years ago by jmoore <[email protected]>
Move to self-hosted runner

192589fe9274038099106928a4d92a4a146932d5 authored over 3 years ago by jmoore <[email protected]>
Disable OMERO servers in GHA

d3561e0b0056a51797191dc0d0a53c09a25cae84 authored over 3 years ago by jmoore <[email protected]>
Rework omero_ms_zarr_fake for better backgrounding

adacab44d7212ac4252ffea08e2e6d3b9da15766 authored over 3 years ago by jmoore <[email protected]>
Fix bioformats2raw to point to the internal zarr

07b657e266d7ad8ecd51a67b953d9ad182d21fad authored over 3 years ago by jmoore <[email protected]>
Set user id to make tmpdir writable

e6978a508b1ce17c5bfd1d6c5acc162ef85ac94a authored over 3 years ago by jmoore <[email protected]>
Print PWD from bioformats2raw_fake

6fb1b73379579ae9f6bd0819462826fd31cbdb64 authored over 3 years ago by jmoore <[email protected]>
Try setting cwd for Popen

013024052c48818bada4983c7a8bc96526c54e4a authored over 3 years ago by jmoore <[email protected]>
Add doc strings

d8b18abb1c366ff4dcc82802f7fa7d2779c7c50e authored over 3 years ago by jmoore <[email protected]>
Fail fast

a422768d6a818e553d893293aabab5dba819f8d3 authored over 3 years ago by jmoore <[email protected]>
Implement names for sources and suites

d88cce6faebe7b5c2e2146fae37121ffe4697ceb authored over 3 years ago by jmoore <[email protected]>
Test that all scripts are used

ebb4d99731aad9f04f7670b2ae78fb88c3534a5e authored over 3 years ago by jmoore <[email protected]>
Enable more tests

aeb9e0e0a0e70a67e43b907bca2b4fbb2007bc5b authored over 3 years ago by jmoore <[email protected]>
Activate GHA workflow

Runs pytest within a conda environment.

153951cd4218c930302b46bf75e53f23b68bb1f7 authored over 3 years ago by jmoore <[email protected]>
Working v0.1 and v0.2 together

f9add5c0dc87535be703fc95a6c2f6b8731799c1 authored over 3 years ago by jmoore <[email protected]>
Passing commit (only v0.2)

bb2da5dda6f44d305e45a2a3a46b5011b796f451 authored over 3 years ago by jmoore <[email protected]>
Add ome_zarr create and checksum scripts

These are currently still failing, partially because of test
set up (more temporary directories ...

1f13ac74feffc0a9392fd9155a1cd626f017d040 authored over 3 years ago by jmoore <[email protected]>
Commit small v0.1 and v0.2 bioformats2raw fake file output

bf4c24dfc9a67179a1b2807cf996560f2cf9a6b7 authored over 3 years ago by jmoore <[email protected]>
Working subprocess sources (omero-ms-zarr)

f128be66775d1fa63f2fd2fbbb3126f63a49683f authored over 3 years ago by jmoore <[email protected]>
Unify on 'source' and 'suite'

f5f02985a03a2da8d3c2d32b8f2f3c4c48b1cdc3 authored almost 4 years ago by jmoore <[email protected]>
Working bf2raw generation via docker

76c8d4a85c80c72becaf9a759e1b71dccc9488f5 authored almost 4 years ago by jmoore <[email protected]>
Simple first working version

e3f855392b1cafe71a92647b2d8d8dffb4f7b624 authored almost 4 years ago by jmoore <[email protected]>