github.com/ome/ngff issues | Ecosyste.ms: OpenCollective

Change `version` field(s) from SHOULD to MUST

keller-mark opened this issue almost 2 years ago

Link to the JSON schemas from the spec

keller-mark opened this issue almost 2 years ago

Clarification of whether top-level fields in spec are optional or required

keller-mark opened this issue almost 2 years ago

Adopt Zarr v3

normanrz opened this issue almost 2 years ago

website: roadmap/status page

joshmoore opened this issue almost 2 years ago

website: document hosting a community call

joshmoore opened this issue almost 2 years ago

"standalone" label images

bogovicj opened this issue almost 2 years ago

Efficiently storing millions of spots

tischi opened this issue almost 2 years ago

Proposal: move to RTD

joshmoore opened this pull request almost 2 years ago

Fix `<img/>` element for newer bikeshed versions

joshmoore opened this pull request almost 2 years ago

Add CITATION.cff

joshmoore opened this pull request almost 2 years ago

Adapt the CF conventions data model

d-v-b opened this issue almost 2 years ago

Metadata: User stories for named channels

tischi opened this issue almost 2 years ago

simplify multiscale and examples

d-v-b opened this pull request almost 2 years ago

Add ITKIOOMEZarrNGFF to implementations

dzenanz opened this pull request almost 2 years ago

Resolving misc issues and ambiguities in labels section

virginiascarlett opened this pull request almost 2 years ago

Backporting test suites

manzt opened this issue almost 2 years ago

unit -> units

d-v-b opened this pull request almost 2 years ago

FAQ: what are ways to transition to NGFFs?

joshmoore opened this issue almost 2 years ago

Labels section rewrite

virginiascarlett opened this pull request almost 2 years ago

Find out what labeled object represents if names to labels have not been given

aliaksei-chareshneu opened this issue about 2 years ago

Interpreting OME Zarr data

aliaksei-chareshneu opened this issue about 2 years ago

Sample NGFF (OME Zarr) 3D volumetric data

aliaksei-chareshneu opened this issue about 2 years ago

Allow '.' dimension separator

normanrz opened this pull request about 2 years ago

Replace link to OME logo with an https link

JulianHn opened this pull request about 2 years ago

ngff.o.org as a sign post

joshmoore opened this issue about 2 years ago

Mixed content warning on https://ngff.openmicroscopy.org/latest/

JulianHn opened this issue about 2 years ago

units unit fix

will-moore opened this pull request about 2 years ago

units instead of unit

will-moore opened this issue about 2 years ago

specs for axes coordinates information

giovp opened this issue about 2 years ago

Require same datatype for all arrays in multiscales:datasets

constantinpape opened this pull request about 2 years ago

Scale array MUST have the same dtype

constantinpape opened this issue about 2 years ago

Add identity to image coordinateTransformations schema

thewtex opened this pull request about 2 years ago

Multiscales order matters and indicates array size / resolution (?)

bogovicj opened this issue about 2 years ago

Fix review github action, use correct variable to format comment

ivirshup opened this pull request about 2 years ago

Coordinate transforms json-schema (request for feedback)

ivirshup opened this pull request about 2 years ago

[troubleshooting: ignore for now] Get CI rendering working

ivirshup opened this pull request about 2 years ago

PR rendering CI

ivirshup opened this issue about 2 years ago

Affine transformations specification are not decoupled from their input and output spaces

LucaMarconato opened this issue about 2 years ago

Rename to OME-Zarr?

normanrz opened this issue about 2 years ago

Referencing zarr stores, groups, arrays, and attributes

bogovicj opened this issue about 2 years ago

Coordinate Transformation to map yx labels to cyx image

LucaMarconato opened this issue about 2 years ago

Add optional "long_name" to "axes"

thewtex opened this issue about 2 years ago

consolidate Plate to preview image

will-moore opened this issue about 2 years ago

List sources of sample data

joshmoore opened this issue over 2 years ago

Ngff tools table

will-moore opened this pull request over 2 years ago

Coordinate systems and new coordinate transformations proposal

bogovicj opened this pull request over 2 years ago

Generalize well organization in high-content screening: field of view => image

jluethi opened this pull request over 2 years ago

Add section about JSON schemas

sbesson opened this pull request over 2 years ago

Allow `.` as the dimension separator

jstriebel opened this issue over 2 years ago

Fix formatting of link to WebGateway documentation

melissalinkert opened this pull request over 2 years ago

How do we represent regions of interest in OME-NGFF?

jluethi opened this issue over 2 years ago

Process definition

joshmoore opened this issue over 2 years ago

Add missing ids to strict_image.schemas

will-moore opened this pull request over 2 years ago

image-label: JSON schemas and clarifications

sbesson opened this pull request over 2 years ago

Review workflow: fix generated URL.

sbesson opened this pull request over 2 years ago

Add Review comment to all PRs.

joshmoore opened this pull request over 2 years ago

Add missing plate and well schemas for 0.1, 0.2, 0.3

will-moore opened this pull request over 2 years ago

Clarify types and requirements levels for the plate/well specification

sbesson opened this pull request over 2 years ago

image-label metadata: invalid JSON in example

JolifantoBambla opened this issue over 2 years ago

RF: take the "burden" off @kimdhamilton shoulders

yarikoptic opened this pull request over 2 years ago

ENH: add .mailmap to harmonize contributors names etc

yarikoptic opened this pull request over 2 years ago

Plate/well JSON schemas (latest specification)

sbesson opened this pull request over 2 years ago

Multiple annotations on a pixel

vatempeli opened this issue over 2 years ago

Review comment action

joshmoore opened this pull request over 2 years ago

Proposal: consolidate JSON schema tests using keys

sbesson opened this pull request over 2 years ago

Proposal: Add UUID field to multiscale objects

joshmoore opened this pull request over 2 years ago

Propose resolution _groups_ for xarray support

joshmoore opened this pull request over 2 years ago

bioformats2raw.layout

joshmoore opened this pull request over 2 years ago

Clarifies that scale should always capture the downsampling factor

sbesson opened this pull request almost 3 years ago

OME Metadata Support

joshmoore opened this issue almost 3 years ago

Transformation types

bogovicj opened this issue almost 3 years ago

Misc spec clarifications

constantinpape opened this issue almost 3 years ago

Proposing spaces and transforms

bogovicj opened this issue almost 3 years ago

Fix typo in json schema

constantinpape opened this pull request almost 3 years ago

Disallow mismatching axes units and types

sbesson opened this issue almost 3 years ago

Define the origin w.r.t. the pixel corner or center

constantinpape opened this issue almost 3 years ago

User stories transformations

constantinpape opened this issue almost 3 years ago

Rendering settings specification

dominikl opened this issue about 3 years ago

Pip install

will-moore opened this pull request about 3 years ago

Investigate OpenMINDS as an option for ngff validation

will-moore opened this issue about 3 years ago

Shapes

will-moore opened this issue about 3 years ago

document client feature support

will-moore opened this issue about 3 years ago

Table spec proposal

kevinyamauchi opened this pull request over 3 years ago

Add initial compatibility matrix

joshmoore opened this pull request over 3 years ago

Add new_spec.md

joshmoore opened this pull request over 3 years ago

Compatibility with xarray

thewtex opened this issue over 3 years ago

Mesh specification

glyg opened this issue almost 4 years ago

Collections Specification

DragaDoncila opened this issue almost 4 years ago

Clarify that "image-label" and "multiscales" are siblings

will-moore opened this issue about 4 years ago

Constrain dtypes & shape for multiscale arrays

joshmoore opened this issue about 4 years ago