Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/ome/bio-formats-examples

Examples of usage of the Bio-Formats API
https://github.com/ome/bio-formats-examples

travis: Move non-java components to oraclejdk8

de4a6f91e21f1f94b851a2945359565ce2de4cca authored over 9 years ago by Roger Leigh <[email protected]>
Merge pull request #3 from rleigh-dundee/glview-rm

glview: Remove

97c0166b13eb6e759d2ebe9ffe67485e8d6da721 authored over 9 years ago by Melissa Linkert <[email protected]>
Remove temporary directory

ef68d5a659e8c2588bb431f05234235a3e2964ed authored over 9 years ago by Sebastien Besson <[email protected]>
Create memoizer using javaObject inside parfor loop

Using this method seems to prevent errors of type:
Error: MATLAB cannot determine whether "loci"...

67bfa5dc000b92de846b0b6b354c55d3d5397b09 authored over 9 years ago by Sebastien Besson <[email protected]>
Wrap movie() in a test for graphical display

48dad7ee7cb1153145d943524b686bf43b6c919e authored over 9 years ago by Sebastien Besson <[email protected]>
Prevent segmentation violation when executing bftest in non-display mode

780f2d7052b23f8cebc33757050e229c035f6813 authored over 9 years ago by Sebastien Besson <[email protected]>
Port last doc improvements into test script

42501904fac67fdacb1111c452610220592f452c authored over 9 years ago by Sebastien Besson <[email protected]>
Fix btest intialization

68ae775ca54c4c9ce91ff81df6fdd84aaf782435 authored over 9 years ago by Sebastien Besson <[email protected]>
Fix tmpdir

924c3a47744314f0fc041f0cb13137a835da469d authored over 9 years ago by Sebastien Besson <[email protected]>
More examples embedding

c5de2e293aacb0aec1966a0c8f3b3f52533a7816 authored over 9 years ago by Sebastien Besson <[email protected]>
Fix bfsave and add more literalinclude blocks

1c7b136c550d37d5c72ec36b6271947cb5c030ae authored over 9 years ago by Sebastien Besson <[email protected]>
Fix encoding and test literalinclude

58aaccb0b3f7a9e6c2c16e0a445ab8b7ff478cfb authored over 9 years ago by Sebastien Besson <[email protected]>
Migrate bftest under docs/sphinx for integration

f34cc973180c03b07e873bca26c7537919f70d5e authored over 9 years ago by Sebastien Besson <[email protected]>
Merge branch 'develop' of github.com:openmicroscopy/bioformats into develop

806817e576e8e981ecc4be90e83d9b055df1d1f7 authored over 9 years ago by Christoph Sommer <[email protected]>
travis: Switch from saucy to trusty

saucy has been removed from the mirrors and was no longer supported.

366d231d5380a1da67492482782232cf14b6af49 authored over 9 years ago by Sebastien Besson <[email protected]>
glview: Remove

This is redundant now it is an integrated part of the
Bio-Formats C++ sources.

d9b93b2efa0c6574939afab5debce038fb9bbc59 authored over 9 years ago by Roger Leigh <[email protected]>
Merge branch 'develop' of github.com:openmicroscopy/bioformats into develop

ccc8c694e1a8b9becffd3392ed156e73f594c09f authored over 9 years ago by Christoph Sommer <[email protected]>
merge 1

2bc208f8a2e4712494738df7a0f22e4498a71fa5 authored over 9 years ago by Christoph Sommer <[email protected]>
prevent utests/test.mdb from confusing git

suggested by @melissalinkert

8adc07928a46468293851ec7d1de09da1b79f08b authored over 9 years ago by Mark Carroll <[email protected]>
travis: Fix merge conflict

f239fd93c7dcd403de08c1cdc4ad87e6291a5a2e authored almost 10 years ago by Roger Leigh <[email protected]>
Impose Sphinx 1.2.3 for Travis build

Sphinx 1.3.0 has been released on March 10 and is installed by default.
However our code current...

15ecba8eca10724edd4f6a5850144bfd8e36220f authored almost 10 years ago by Sebastien Besson <[email protected]>
ome: compat: Split out non-stdlib compatibility code into ome::common

17d1f9a761097dc12b6193417e5bc968852ec40c authored almost 10 years ago by Roger Leigh <[email protected]>
Merge pull request #1653 from sbesson/flake8_nocap

Flake8 2.4.0 imposes cap on PEP8

0730671570cb82d05f0717a84ce1ad76ddf2d765 authored almost 10 years ago by Josh Moore <[email protected]>
Flake8 2.4.0 imposes cap on PEP8

5c619540f132b7442b799afd6c9deb4348019d72 authored almost 10 years ago by Sebastien Besson <[email protected]>
Merge pull request #1637 from melissalinkert/cellh5

Add CellH5 support

ade50185143d8e4ff9702a71bb61f4e22720fc4f authored almost 10 years ago by Melissa Linkert <[email protected]>
Ignore oxygen project files

70d0d8d965a32a9f616bfed79e2a7a68dd4d5080 authored almost 10 years ago by Andrew J Patterson <[email protected]>
added binary attribute for h5 files

Conflicts:

.gitattributes

0163bf987c36de37fcd9976662a9b028eb191af9 authored almost 10 years ago by Christoph Sommer <[email protected]>
travis: Split flake8 check from sphinx build

e7a10c9940ba52198c0cd10937b7d18943a2e52a authored almost 10 years ago by Roger Leigh <[email protected]>
Add new entries i.e. .so and .dylib

79a975a6325e6a1cc3e376ed906fedbd7968bca1 authored almost 10 years ago by Jean-Marie Burel <[email protected]>
Enforce PEP8 version

fbfe5f67ef4c81d4c351281c6509d744ef6e4a3c authored almost 10 years ago by Sebastien Besson <[email protected]>
added binary attribute for h5 files

fd5cf28046c3e4c182d50dcf056f1e8a7cfe358a authored almost 10 years ago by Christoph Sommer <[email protected]>
Omit more binaries from LF line endings

55f209b9ebaa29bce6785ada15371714106fda94 authored almost 10 years ago by Bjoern Thiel <[email protected]>
Omit binaries from LF line endings

fa8b00f6fd7d08030b51174d7b3070cea0cb0890 authored almost 10 years ago by Bjoern Thiel <[email protected]>
Enforce LF line endings

Working on different projects on a Windows system often means switching
between
core.autocrlf=in...

d1e2f2b550826308e3d449a97be20d3786d0c96d authored almost 10 years ago by Bjoern Thiel <[email protected]>
Fetch all tags befor mvn, cpp and cppwrap builds

Since Travis clones the repository with a default depth of 50, builds using a
tag can fail. This...

8a3f0dfb75452e6a142547be32652b53c8913d2c authored about 10 years ago by Sebastien Besson <[email protected]>
Add flake8 to the Sphinx component of the Travis build

430e7c01f9627cd0a154448077a3745ded785fed authored about 10 years ago by Sebastien Besson <[email protected]>
Merge pull request #1364 from hflynn/external-prs

Adding external PR guidance to CONTRIBUTING.md

f58c9d0a610cec87e16ab457c08a4811adc2a377 authored about 10 years ago by Melissa Linkert <[email protected]>
Adding external PR guidance to CONTRIBUTING.md

65842abb2d9286bc7fc36cb6407a80d1d1a5b802 authored about 10 years ago by Helen Flynn <[email protected]>
travis: Use precise libtiff4

4df881cf882f3d2b9cddb2ef1169d65ce14c0393 authored about 10 years ago by Roger Leigh <[email protected]>
travis: Only use saucy for texlive

f27b15e844e68e647fe9789b8e5d6ffe9686c2d0 authored about 10 years ago by Roger Leigh <[email protected]>
travis: Use Boost 1.48

d9b9ae08bd4c55f671d0d7f2b4840d337f8f98ec authored about 10 years ago by Roger Leigh <[email protected]>
travis: Install graphicsmagick

f9681917d487b82c4d3b3f6c4c5b2bb9966a51b7 authored over 10 years ago by Roger Leigh <[email protected]>
travis: Install latest version of sphinx

4377fcdae9114fa80eac9a4e20073e7cc8f1fa17 authored over 10 years ago by Roger Leigh <[email protected]>
travis: Remove openjdk7

04739231edcaa4c6bbfb24519145157677de7d26 authored over 10 years ago by Roger Leigh <[email protected]>
Set the Sphinx version to 1.2.2

1290bf627a71da5a08c1db34460d720121fbea15 authored over 10 years ago by Sebastien Besson <[email protected]>
travis: Build with Oracle JDK 8

1192aa956f3e6d369d17b9197ecdf18ac5fb28fb authored over 10 years ago by Roger Leigh <[email protected]>
Install Sphinx using pip instead of apt-get

The Travis build seems to be failing on a bug which has been fixed in
the 1.2.2 version of Sphin...

ab242f2cdabebf9393381c9007cbb9b1be6cf2c8 authored over 10 years ago by Sebastien Besson <[email protected]>
Revert "travis: Install and use GCC 4.8"

This reverts commit 8c24e19331d3bb40af7708262742d0b606108b92.

e3f96f58a09781b23229625452528fd97e14a01c authored over 10 years ago by Roger Leigh <[email protected]>
travis: Install and use GCC 4.8

9dd08aa74c3b5ef1b37c34c09ff593d5f622b6b3 authored over 10 years ago by Roger Leigh <[email protected]>
travis: Switch from raring to saucy

raring has been removed from the mirrors and was no longer supported

3c5a5f5e3969d6ec97afcfc2d91c8fe3450b2d51 authored over 10 years ago by Roger Leigh <[email protected]>
Adding CONTRIBUTING file to BF repo

3174e2dc84fdc7745d2ac63e8e82396c28c4090f authored over 10 years ago by Helen Flynn <[email protected]>
Changing review time to asap

5bf8d96678ae3b6f2ebe9327a2c3481577e424fc authored over 10 years ago by Helen Flynn <[email protected]>
travis: cpp build requires libtiff5-dev

70ac1cdffa2915d539aa2caf5ab403793db84e32 authored over 10 years ago by Roger Leigh <[email protected]>
change TeX Gyre font package so XeLaTeX can find it

e73173e3540999c1b2fa11f114605701f930c08c authored almost 11 years ago by Mark Carroll <[email protected]>
Rename common to format-commons

46350ef72cd4ce1d6424fd23bb08849c50211d95 authored almost 11 years ago by jmoore <[email protected]>
ome-io: remove refs to ome-io

Conflicts:
ant/toplevel.xml
components/formats-bsd/src/loci/formats/UpgradeChecker.java
compo...

1cef732a0eb9da93051513414fae7690d7ab8885 authored almost 11 years ago by jmoore <[email protected]>
ome-plugins: remove references to components

Conflicts:
ant/toplevel.xml
scan-deps.pl

d6d398737f3be576fe77b3ff16970c5898d42835 authored almost 11 years ago by jmoore <[email protected]>
Minor impl-bsd changes

e263c284b3379f6eef1009cea2e03c6e64195e1b authored almost 11 years ago by jmoore <[email protected]>
Ask Travis to test the top-level Ant compile targets

43d1dbd3cc59285becb2550328a81d2a83f85cd9 authored almost 11 years ago by Melissa Linkert <[email protected]>
Merge pull request #834 from joshmoore/allow-failures

Permit cppwrap failure

21476a43d5b669cdfc46ef6bce0254af801d0d7f authored almost 11 years ago by Melissa Linkert <[email protected]>
travis: Remove python version requirement

Travis recently changed how python is supported, but apparently
what we were doing never actuall...

59eb52f8e15b0a662df46944e991c483d3692638 authored almost 11 years ago by Roger Leigh <[email protected]>
Permit cppwrap failure

59ffe7dc5746cb686a19327b8ec1eeded4e2f673 authored about 11 years ago by jmoore <[email protected]>
Revert "travis: Build with OpenJDK8"

This reverts commit 40f7f18e7b246c28c7539e678bebc8fcdc0064dc.

71c8796181cdce823b1f6a350ebee77978a8d1be authored about 11 years ago by Sebastien Besson <[email protected]>
Merge pull request #1 from rleigh-dundee/glview

Add GLView C++ viewer for 3D volume surfaces

93f3d99a2990a290c0d785ac70dde9abc00c8e0a authored about 11 years ago by Melissa Linkert <[email protected]>
travis: Build with OpenJDK8

10b5310ad454f8b5903e3011374ea77411d3199e authored about 11 years ago by Roger Leigh <[email protected]>
glview: Channel min and max can't be inverted

8e7e39a0ec344e9bf21bc9e5bba49c8ebdaefa43 authored about 11 years ago by Roger Leigh <[email protected]>
glview: Don't resize unless the GL context is valid

d20461072ce2be21d48869fbb4ef206ff4520101 authored about 11 years ago by Roger Leigh <[email protected]>
glview: Minimum GLSL version is 110

eeb9fb6e2bbd5d17a2891dedbcfd75371f1c5a49 authored about 11 years ago by Roger Leigh <[email protected]>
glview Correct OpenGL logic errors and enable debugging context

An error setting uniform values has been corrected.

Debugging logic has been added to trace log...

7c194e84a94e0a7f3878837c4d2efa66d58ce811 authored about 11 years ago by Roger Leigh <[email protected]>
Add glview C++ viewer for 3D volume surfaces

f10b3f8063835bea2f8332a40d76e001fc89ea7a authored about 11 years ago by Roger Leigh <[email protected]>
Initial commit

912716bffcc839ebf7f1fc0f9fb1cc7182d96f82 authored about 11 years ago by Melissa Linkert <[email protected]>
travis: Build cpp doxygen documentation

6b47b547989b9b35b5f82ed7a9a8900cf52b0365 authored over 11 years ago by Roger Leigh <[email protected]>
Initial C++ implementation

12fa044cbe12a4e8602b0906d5fe84f99045fcac authored over 11 years ago by Roger Leigh <[email protected]>
Merge pull request #647 from rleigh-dundee/java6-minver

Make JDK 1.6 the minimum supported version

b4bf9d6be2b716fa40d6a73edfcdcad0b267f389 authored over 11 years ago by Melissa Linkert <[email protected]>
travis: Install python-genshi for all builds except sphinx

5c55ca1861c3d419a12ec0ba03ef964ffe4a1694 authored over 11 years ago by Roger Leigh <[email protected]>
README.md: Restrict syntax to java 1.6

8b15dc814d48b066e630b22b8d6af503dbb04386 authored over 11 years ago by Roger Leigh <[email protected]>
Explicitely pass install command in the case of the maven job only

4104e0921009d813f3b8dcaaaab7272eeb69de43 authored over 11 years ago by Sebastien Besson <[email protected]>
Perform conditional installation depending on the BUILD type

f575177e1b193dbf47ce28258122c5db126d5d43 authored over 11 years ago by Sebastien Besson <[email protected]>
test-build: Build sphinx docs

c34ffcdbb13ada226390b058d12559749e5609a7 authored over 11 years ago by Roger Leigh <[email protected]>
travis: Build cppwrap

- Add tools/test-build script
- Run tools/test-build
- Install needed build dependencies

78e5927ad15e9df7d37825a87c842855c7a401ec authored over 11 years ago by Roger Leigh <[email protected]>
travis: Install python-genshi

8b42d19eb58672fef8df9123f71c6392447099ae authored almost 12 years ago by Roger Leigh <[email protected]>
Adding .DS_Store to .gitignore file

a38fbe54a9ce204cf1cd93c81402208a546cd17d authored almost 12 years ago by Andrew J Patterson <[email protected]>
Merge pull request #311 from joshmoore/rebased/develop/travis-yml

Add .travis.yml (rebased onto develop)

f55790433b0b4a0b21879f74a053c7882cccadf8 authored about 12 years ago by Melissa Linkert <[email protected]>
Add .travis.yml for 3 JDKs

travis-ci.org will build Bio-Formats for each
commit that's pushed. The current configuration
wi...

023cb92917bfe3a128d20907faf827fab81f28f3 authored about 12 years ago by jmoore <[email protected]>
Add .mailmap for better "git shortlog" reports

427fd3fc1f22fd95679c9697cf4bdcced248d7c6 authored about 12 years ago by Curtis Rueden <[email protected]>
Tidying and consistency editing

a86f351845154e72b783548a014308912860745a authored about 12 years ago by Helen Flynn <[email protected]>
Update links in readme, LOCI-plugin & ImageViewer

d1527e7c8512dcbc921c5c5d0ddd4497fb6baa6e authored about 12 years ago by Helen Flynn <[email protected]>
Convert README to Markdown

73d7eeaf00bbcdd00130cf860488a7741358a3fb authored about 12 years ago by Curtis Rueden <[email protected]>
Redirect LOCI website links to openmicroscopy.org

0a2c9a6a28d70409129e5325aa66b0ffd36cee7a authored about 12 years ago by Sebastien Besson <[email protected]>
Add .log files to .gitignore

69b19a575a69b110f55406aca114753c5b9ff843 authored about 12 years ago by Blazej Pindelski <[email protected]>
Add PR testing instructions to the README

0b55e52108c329298d8a2cd3b687768c233915ca authored over 12 years ago by Melissa Linkert <[email protected]>
Merge branch 'develop' into license-headers

8c493310738ddf033cd18bc7bb598323fb2e3e91 authored over 12 years ago by Curtis Rueden <[email protected]>
Add simple README.txt to pretty up the GitHub page

535cd90f0634a75b442180587361cc30a05a2bc7 authored over 12 years ago by Curtis Rueden <[email protected]>
Update project licenses

fe469ceacc0d148845e0bd61d5e194cce64bb8ca authored over 12 years ago by Curtis Rueden <[email protected]>
Add loci_tools.jar to git ignore list

This is useful because when Fiji builds Bio-Formats it puts the
resultant artifact in the toplev...

774072fa874f40626002e5eddd7ebaac2e405270 authored over 12 years ago by Curtis Rueden <[email protected]>
Add 'eclipse' target

6d3b159f4c4e8b65748b14ed9d82bae9fde552a0 authored almost 13 years ago by jmoore <[email protected]>
Add test-output folder to gitignore.

This folder is created when "ant test" is run.

b9e7b123cff21fab90a1dd7419abc8bc0d3cc0f8 authored over 13 years ago by Curtis Rueden <[email protected]>
Remove build-eclipse folder from ignore list.

c8b4d8981f236ba830641d666dd2ae194ee72554 authored over 13 years ago by Curtis Rueden <[email protected]>
Simplify gitignore rules.

2659e1b02a70fb7d5b7646dbbba8146b414f5cb2 authored over 13 years ago by Curtis Rueden <[email protected]>
Add Maven Eclipse metadata to git ignore lists.

d4ecffe62a509427304b4b2dda8a1822cc4ee406 authored over 13 years ago by Curtis Rueden <[email protected]>