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github.com/ome/bio-formats-examples

Examples of usage of the Bio-Formats API
https://github.com/ome/bio-formats-examples

Also bump build.gradle and review the Travis JDK environment

5a20960558d6d58b836e8758b219b2d92d40e8ba authored about 6 years ago by Sebastien Besson <[email protected]>
Bump Bio-Format version to 6.0.0-m4

23a0e6808c15656a471b4eecefccd7c7d3bcd23d authored about 6 years ago by Sebastien Besson <[email protected]>
Move to 6.0.0-SNAPSHOT

c4fff42fbbb90db4ea770e3eed170fe04e3644d3 authored about 6 years ago by Sebastien Besson <[email protected]>
Bump to 6.0.0-m3

a3da451819be8cc7a0b558ce19086299b1f108fa authored about 6 years ago by Sebastien Besson <[email protected]>
Merge pull request #40 from melissalinkert/pyramid-example

Add example of writing a pyramid when resolutions need to be calculated

4f1a39c660561faceb8f9d4c1530bc8a58f609de authored about 6 years ago by Sébastien Besson <[email protected]>
Run GeneratePyramidResolutions via ExampleSuite

f56cd2d4294e5f4b4a21bb2f2166c11a7a3d29f4 authored about 6 years ago by Melissa Linkert <[email protected]>
Update Bio-Formats to 6.0.0-m2 in Gradle build

9b912289ca37c3df62f3f58b58ff95e85a6393f9 authored about 6 years ago by Melissa Linkert <[email protected]>
Update Bio-Formats to 6.0.0-m3

d8f2bdb616b82f76511277a235263a0e0f926645 authored about 6 years ago by Melissa Linkert <[email protected]>
Add example of writing a pyramid when resolutions need to be calculated

28cef68f3491e2eb84c6594bed954f01c5fb2f07 authored about 6 years ago by Melissa Linkert <[email protected]>
Merge pull request #39 from jamesmyatt/patch-1

Correct example with colormap in MATLAB

4a07150286ef810ebdd1976942cf232890520bb3 authored about 6 years ago by Sébastien Besson <[email protected]>
Correct example with colormap in MATLAB

64209e9add8fbd2eb350f64e6b636a7d11b9a98a authored about 6 years ago by James Myatt <[email protected]>
Also update exclusion condition

a7635050f42f546d6d6c1073bab53845fa124551 authored about 6 years ago by Sébastien Besson <[email protected]>
Switch to Oracle JDK 11

See https://travis-ci.community/t/help-with-oraclejdk10-build-on-linux/398

3905d7515afc46cb5961e2dd35f88cab1cf164fb authored about 6 years ago by Sébastien Besson <[email protected]>
Bump to 6.0.0-SNAPSHOT

693753e3d8ac25c319940ad9388f975fa750e891 authored over 6 years ago by Sebastien Besson <[email protected]>
Bump version to 6.0.0-m2

43db18877526777ce2ff7ba04cee4c025a556df8 authored over 6 years ago by Sebastien Besson <[email protected]>
Merge pull request #38 from sbesson/6.0.0-m2

6.0.0 m2

0cc926485806e9ccd5a79b00159521b412dc0c30 authored over 6 years ago by Sébastien Besson <[email protected]>
Improve args length test

0b6253d796595bdb39e8d0851b8cb13cb16669c6 authored over 6 years ago by Sébastien Besson <[email protected]>
Fix exclusion condition

4bff1b3cce7260fa657ea95d8677a10ca488ff44 authored over 6 years ago by Sebastien Besson <[email protected]>
Also execute the ExampleSuite in Gradle

ae0d69fc607cdc833e7d125fa067f0243f9f12c2 authored over 6 years ago by Sebastien Besson <[email protected]>
Add execution of SubResolutionExample to build phase

c4c1753aafacb67e534dc4cca6db939b49f66109 authored over 6 years ago by Sebastien Besson <[email protected]>
Move SubResolutionExample alongside other examples

851542f3c00729b4992214cd9185816a2a1dc557 authored over 6 years ago by Sebastien Besson <[email protected]>
Remove out-of-date source code links

This was performed using these tricks:

git ls-files \*.java | xargs sed -i '' -e '/\>Gitweb\</d...

5df85e9716dc90fbaabc5e3e712821829191295b authored over 6 years ago by Curtis Rueden <[email protected]>
Update copyright headers

Repository: openmicroscopy/bioformats
Already up-to-date.

Generated by BIOFORMATS-DEV-latest-co...

86e81e17003a54d672e0884667260e97fd2b3219 authored over 6 years ago by Snoopy Crime Cop <[email protected]>
Update copyright headers

Repository: openmicroscopy/bioformats
Already up-to-date.

Generated by BIOFORMATS-DEV-latest-co...

de2b54f1bc82819f3eb268b843f1745538ef1223 authored over 6 years ago by Snoopy Crime Cop <[email protected]>
Update copyright headers

Repository: openmicroscopy/bioformats
Already up-to-date.

Generated by BIOFORMATS-5.1-latest-co...

cb578dae2d2a04779f5b16b1acdca2a15538241f authored over 6 years ago by Snoopy Crime Cop <[email protected]>
Extend copyright year range to 2014

It was done with the following shell command:

git grep -l 'Copyright (C) [0-9]\{4\} - [0-9]...

9d5e193c9084aec529a9a8d3524f2329c89cc189 authored over 6 years ago by Curtis Rueden <[email protected]>
Remove source links hyperlinks from Java source files

URLs were mostly used to create links to the source code from the Javadocs.
However, it is hard ...

ac3d1ea285e353b95da4ffb93921c8aab356d08f authored over 6 years ago by Sebastien Besson <[email protected]>
Move bio-formats to formats-gpl and impl-bsd to formats-bsd

3e4c24a1165df6189d56e33b2f8368708fdbd6e2 authored over 6 years ago by Melissa Linkert <[email protected]>
Extend copyright year range to 2013

It was done with the following shell command:

git grep -l 'Copyright (C) [0-9]\{4\} - [0-9]...

5bec3fd4a9cae6cd4e24ea1147cc2e87618612e6 authored over 6 years ago by Curtis Rueden <[email protected]>
SubResolutionExample: fix header text

6daa584d1a7192292e5200de791680e991b96079 authored over 6 years ago by Melissa Linkert <[email protected]>
Add example of how to use the sub-resolution API

2152af4d813f22143f8042e2866218ea40f5ea43 authored over 6 years ago by Melissa Linkert <[email protected]>
Consume Bio-Formats 6.0.0-m2

a808bf48342dca17787c4fd53112c2d076319cf2 authored over 6 years ago by Sebastien Besson <[email protected]>
Bump to 6.0.0-SNAPSHOT

7b90d6ca4d231613df464b93d57789406ab4084b authored over 6 years ago by Sebastien Besson <[email protected]>
Bump component and Bio-Formats versions to 6.0.0-m1

e991e66bda1b05a20e49993d832d07c11a826738 authored over 6 years ago by Sebastien Besson <[email protected]>
Bump to the next development SNAPSHOT

10c102a5fa390d16e19e545eacf33990b319afbc authored over 6 years ago by Sebastien Besson <[email protected]>
Merge pull request #37 from sbesson/5.9.2

Bump versions to 5.9.2

d8070599ce5784e298a17371f83a7d9e352ae103 authored over 6 years ago by Sébastien Besson <[email protected]>
Bump versions to 5.9.2

c37acc9257af57d1526d8fa00983bb15321a4cb4 authored over 6 years ago by Sebastien Besson <[email protected]>
Merge pull request #36 from sbesson/rc_deployment

Add infrastructure to deploy on tags via Travis CI

6a86126eb61cea16bd7232065be178b733e61392 authored over 6 years ago by Sébastien Besson <[email protected]>
Add infrastructure to deploy on tags via Travis CI

- use Travis deployment mechanism https://docs.travis-ci.com/user/deployment/
to release the art...

d0225e15e7bc803281dd5fc527e40de109bddb72 authored over 6 years ago by Sebastien Besson <[email protected]>
Merge pull request #35 from dgault/5.9.2-SNAPSHOT-bump

Bump to 5.9.2-SNAPSHOT

a3d8c4e0523508edc6ae0ebdad8939050114b8a7 authored over 6 years ago by Sébastien Besson <[email protected]>
Bump to 5.9.2-SNAPSHOT

3d0455112d43ff958774068ad9295c8800141c92 authored over 6 years ago by David Gault <[email protected]>
Merge pull request #34 from dgault/5.9.1-bump

Bump version number to 5.9.1

df84069ec53767a802e42acbccbad307aec85999 authored over 6 years ago by David Gault <[email protected]>
Bump version number to 5.9.1

965d4883af63db08a02bf2a8dbc3df54fed62814 authored over 6 years ago by David Gault <[email protected]>
Bump version number to 5.9.1-SNAPSHOT

bd92acae31c0c555475aff03cc5ec3039606a955 authored over 6 years ago by Sébastien Besson <[email protected]>
Merge pull request #32 from dgault/v5.9.0

Bump version to 5.9.0

75893b3fb6b2fa8bc4c412cf56de2602f0fa1a03 authored over 6 years ago by David Gault <[email protected]>
Merge pull request #31 from sbesson/exec_test

Add execution of examples to the test phase of Maven

ce2227eb1d960b488cb62d461d541bd89a5c437d authored over 6 years ago by David Gault <[email protected]>
Bump version

b92386b788a31f6e6ff47285000c6b3318b50832 authored over 6 years ago by David Gault <[email protected]>
Merge pull request #30 from rleigh-codelibre/ci-java-10

Build updates

daec8b5fd6a7e72208203cec9959d6563c55fe22 authored over 6 years ago by Sébastien Besson <[email protected]>
Add execution of examples to the test phase of Maven

- move the fake files to src/main/resources and include in the resources
- add the maven-exec-pl...

20eaba56a71487f11a4f99ad4534974ea088daa6 authored over 6 years ago by Sebastien Besson <[email protected]>
maven: Update plugin versions

a5b69150702e6efaaa48101bb0897d7bd3c77fe9 authored over 6 years ago by Roger Leigh <[email protected]>
ci: Build with Java 10 on appveyor and travis

6f011c0eab6335f83428e808e13f1c6280e2e7c9 authored over 6 years ago by Roger Leigh <[email protected]>
Merge pull request #29 from dgault/bump-5.9.0-SNAPSHOT

Bump version to 5.9.0-SNAPSHOT

65a4bac7c575e4c888a2bb566752002f7401da96 authored over 6 years ago by David Gault <[email protected]>
Bump version to 5.9.0-SNAPSHOT

5a9235c60443cef8baf823c13d28d49be4b9f2e7 authored over 6 years ago by David Gault <[email protected]>
Merge pull request #28 from dgault/5.8.2-bump

Bump version to 5.8.2

88e6738b2a58c75d3c5dfeb17722e3d4c49d6d6c authored over 6 years ago by David Gault <[email protected]>
Bump version to 5.8.2

768db70edec50ae01d5ef8a3e5f97b584110f1f6 authored over 6 years ago by David Gault <[email protected]>
Merge pull request #27 from dgault/bumpversion-5.8.2-rc1

Bump version to 5.8.2-rc1

2a3aa1951f06e444ba4898145b5a21a7c69a299c authored over 6 years ago by David Gault <[email protected]>
Bump version to 5.8.2-rc1

9717004d3453a34790d3560bb1d1e000710d5f98 authored over 6 years ago by David Gault <[email protected]>
Merge pull request #25 from rleigh-codelibre/maven-updates2

Maven updates part 2

21e249675b8d6bf16f9a45762b75dfb1d0b5b05b authored over 6 years ago by Josh Moore <[email protected]>
gitignore: Sync with ome-common-java

3c9e19ad72daaaf1e134b57416e24d9cfdb35b88 authored over 6 years ago by Roger Leigh <[email protected]>
Update maven plugin versions

1e91c11779b0066246c350e47729f639c07ea71c authored over 6 years ago by Roger Leigh <[email protected]>
Merge pull request #23 from rleigh-codelibre/update-version

Update version to 5.8.1

054e0ee75f75e72ac1cf0b13c0d5436faca578c2 authored almost 7 years ago by David Gault <[email protected]>
Update version to 5.8.1

47971af6ed6d505f3353121e6b4b6c79c0af6479 authored almost 7 years ago by Roger Leigh <[email protected]>
Merge pull request #22 from rleigh-codelibre/package-resources

Package matlab and test data as resources

d96f914462a3793f90d20a2b5c1bfce464253de1 authored almost 7 years ago by Josh Moore <[email protected]>
Package matlab and test data as resources

524c8038daae1a8a95c71a9b1556eded5467a529 authored almost 7 years ago by Roger Leigh <[email protected]>
Move sample data to samples

640d32773bea82cd915d5d2c674f9a864c30d003 authored almost 7 years ago by Roger Leigh <[email protected]>
Move logback.xml to src/main/resources

5c22899383ef244df305661c1a4fc512e7156758 authored almost 7 years ago by Roger Leigh <[email protected]>
Merge bioformats-examples history

a9a02767931578dbdd3a2ea1a23a47542b2aa875 authored almost 7 years ago by Roger Leigh <[email protected]>
Use maven source layout and add maven and gradle builds

9eba19ee94f5910c98b143b364abf65e3e4d2a0b authored almost 7 years ago by Roger Leigh <[email protected]>
Update README

a3e0b322278daea7c38ad8128561642c9ac71e9c authored almost 7 years ago by Roger Leigh <[email protected]>
Merge pull request #20 from dgault/Bio-Formats-5.8.0

Bump Bio-Formats version to 5.8.0

6f200bd33475bec8a374d84e62702c84bfbc7331 authored almost 7 years ago by Sébastien Besson <[email protected]>
Bump Bio-Formats version to 5.8.0

716bc937989d23d8368957ab0502b762fcbfebf6 authored almost 7 years ago by David Gault <[email protected]>
Merge pull request #19 from dgault/Bio-Formats-5.7.3

Bump Bio-Formats version to 5.7.3

ec7406ddaef6454d56ba05f4ba02b9f6486501ef authored almost 7 years ago by David Gault <[email protected]>
Bump Bio-Formats version to 5.7.3

987f146582b9e908c229b428f8f294dcfc2432aa authored almost 7 years ago by David Gault <[email protected]>
Merge pull request #18 from hflynn/patch-1

Update BF URLs in README

991cf21987dabfce891784143388e96b31f41165 authored about 7 years ago by Sébastien Besson <[email protected]>
Update BF URLs in README

6cd74bc6b82a0e67f7d9ee3d65e8becb8076812d authored about 7 years ago by H Flynn <[email protected]>
Add SUPPORT link to README

da32279a6e2641093126b8ce87fb64f20e0f3cb5 authored about 7 years ago by Helen Flynn <[email protected]>
Merge pull request #17 from dgault/Bio-Formst-5.7.2

Bump Bio-Formats version to 5.7.2

2e83ac142435b60459420f506fb0aeead816354d authored about 7 years ago by Sébastien Besson <[email protected]>
Use HTTPS across the board

a60e65f854591547d326e4482069a214d2f2d3fa authored about 7 years ago by Sebastien Besson <[email protected]>
Bump Bio-Formats version to 5.7.2

3090bb7e6d209d5bca69ea73eb4ec371d1a0f97e authored about 7 years ago by David Gault <[email protected]>
appveyor: Further improvements and unification with travis

- Reuse cached python virtualenv properly
- travis runs "mvn install" and builds ant distributio...

6d37c60ae21975dcfd003d5d585a7d625b24bf1b authored about 7 years ago by Roger Leigh <[email protected]>
appveyor: Reduce number of cached items and artefacts

ff8e72d954d1b162a9c137f09e4cf5f0557a4ab0 authored about 7 years ago by Roger Leigh <[email protected]>
appveyor: Add appveyor configuration

b57907b6559957597e32a59d90baf0c60c5f84f1 authored about 7 years ago by Roger Leigh <[email protected]>
Add format/reader doc page guide to CONTRIBUTING

a652a1fab584165279e451cd96f7a82c9f8fc978 authored about 7 years ago by Helen Flynn <[email protected]>
Merge pull request #16 from dgault/Bio-Formats-5.7.1

Bump Bio-Formats version to 5.7.1

ae4b0a07dcb6754cdbc8766b63f9245046add39e authored over 7 years ago by Sébastien Besson <[email protected]>
Bump Bio-Formats version to 5.7.1

7312f1d3a47153e555215b1a2936f6ad94ba0948 authored over 7 years ago by David Gault <[email protected]>
Merge pull request #15 from dgault/Bio-Formats-5.7.0

Bump Bio-Formats version to 5.7.0

d62cb0c4e9f472072d7192a8417ab90237e9d88c authored over 7 years ago by Sébastien Besson <[email protected]>
Bump Bio-Formats version to 5.7.0

c643270078ef8213ae803ddbbe37ef6977eafab8 authored over 7 years ago by David Gault <[email protected]>
Merge pull request #2940 from sbesson/doc_urls

Review URLs in the source code

09cc8a1c469ebe9deec7c4339c5a2aec7d1e816f authored over 7 years ago by Sébastien Besson <[email protected]>
Implement Helen's suggestions

690b105646ea3c1cce0093214e1935716b37d012 authored over 7 years ago by Sebastien Besson <[email protected]>
Review CONTRIBUTING.md

910bf380d2ae801e431c38428d2fbad5b23bba33 authored over 7 years ago by Sebastien Besson <[email protected]>
Review documentation URLs used in README and use relative links instead

d9950c147fc2de6443048cf5e3d29f92f752495f authored over 7 years ago by Sebastien Besson <[email protected]>
Merge pull request #14 from dgault/Bio-Formats-5.6.0

Bump Bio-Formats version to 5.6.0

46e2b98f0ba6f8c81cb7c88b90a7d38b3a4faba9 authored over 7 years ago by Sébastien Besson <[email protected]>
Bump Bio-Formats version to 5.6.0

1ecd84e62c8062f3636b946d71370496ce49be72 authored over 7 years ago by David Gault <[email protected]>
Merge from openmicroscopy/develop

144dcfb4878736a05ada0a2ed718082f605d9343 authored over 7 years ago by David Gault <[email protected]>
Resolve conflict in LociPrefs

18786bc353283fe63912414c847fe315a44fcd02 authored over 7 years ago by David Gault <[email protected]>
Use ome-jai 0.1.0 from maven central

659cd2f5e2e60da5402d82851154ab6886ee3535 authored over 7 years ago by Roger Leigh <[email protected]>
Merge pull request #13 from dgault/Bio-Formats-5.5.3

Bump Bio-Formats version to 5.5.3

b43c4cf9ba203d92ed54dfbf1f63ca2380d82718 authored over 7 years ago by Sébastien Besson <[email protected]>
Bump Bio-Formats version to 5.5.3

f1c7c3bc3aade5302488c87e5ce5c61ab43718dc authored over 7 years ago by David Gault <[email protected]>
Merge pull request #12 from dgault/Bio-Formats-5.5.2

Bump Bio-Formats version to 5.5.2

554e6682e4ae769aca23c7a4e4ac3adaceb53524 authored over 7 years ago by Sébastien Besson <[email protected]>
Bump Bio-Formats version to 5.5.2

481a90ab336a60a4453efa0a4517aa7b2d10df5a authored over 7 years ago by David Gault <[email protected]>