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github.com/orcasound/ambient-sound-analysis

This repository holds code for UW MSDS capstone project analyzing ambient sounds in Orcasound hydrophone data
https://github.com/orcasound/ambient-sound-analysis

fix dotenvc import

801ca24dff3639151d9a537e4504abc2d22234bf authored almost 2 years ago by Caleb <[email protected]>
Merge branch 'main' of https://github.com/orcasound/ambient-sound-analysis

55da2ce9535b7bbb76ada78a51f5f687952719be authored almost 2 years ago by Caleb <[email protected]>
Readme clarifications

ffabb9077fa8256b9c304525225a14f6047d5d0e authored almost 2 years ago by Caleb <[email protected]>
Flexible dotenv version

5b1e3b6e925707407ac13ef2555d99dddca87c50 authored almost 2 years ago by Caleb <[email protected]>
Merge pull request #22 from scottveirs/scottveirs-README-patch-1

Fix typos and reduce ambiguity in nomenclature

d3c3627a61a367028559ee369ae31032a2717772 authored almost 2 years ago by Caleb Case <[email protected]>
Merge pull request #23 from orcasound/dashboard-tabs

Dashboard tabs

dfcb2f3261b8581aceb9bbe937dd322f0a9fee28 authored almost 2 years ago by Caleb Case <[email protected]>
Fix typos and reduce ambiguity in nomenclature

`time frequency` as a phrase is likely to cause confusion, so I've proposed alternatives to "fre...

5318ff9f7a5dff674485723ce1fe89cdb7a33e28 authored almost 2 years ago by Scott Veirs <[email protected]>
Change index to frequency when rounded timestamps

c3ebd7b8dd077a7cfd3e5cd96020aaa4ed011918 authored almost 2 years ago by Caleb <[email protected]>
No aws signin for accessor

328bc0887f5302ce74352c57525c1a911b6ef529 authored almost 2 years ago by Caleb <[email protected]>
Merge branch 'main' of https://github.com/orcasound/ambient-sound-analysis into dashboard-tabs

a8db2411834788195671053bf79e1c1ba8ac8b37 authored almost 2 years ago by Caleb <[email protected]>
Merge pull request #21 from orcasound/ambient-processing

Ambient processing

a6b1f4402a220edcb22fbeb2ef4bac7d0a4f7076 authored almost 2 years ago by mitchhaldeman <[email protected]>
Merge branch 'main' into ambient-processing

c59d66dca0704b8bacb70159402e25533d7c3a99 authored almost 2 years ago by mitchhaldeman <[email protected]>
added ambient scaling, option for dB ambient ref

a7bfe458bae4b6ceb53e0dd4c10f9ddbe9da9b90 authored almost 2 years ago by mitchhaldeman <[email protected]>
Use plotly figs for interactivity

24df2eb2a76b125827142dfb19b99f4722834bbb authored almost 2 years ago by Caleb <[email protected]>
Merge branch 'main' of https://github.com/orcasound/ambient-sound-analysis into dashboard-tabs

3a1957062c7fd63ed959dfa9c7b046a7c021da2b authored almost 2 years ago by Caleb <[email protected]>
added parameter inputs + error handling

35d26f15f02d88cea20e3e50179805b94d7b74d3 authored almost 2 years ago by mitchhaldeman <[email protected]>
first draft spectrogram tab

ec5249d9baa9cb67222eab625115036febe10bd0 authored almost 2 years ago by mitchhaldeman <[email protected]>
adds try/except exception

4c78a8e4fce5ba0b721608df7abcffa86fa302d1 authored almost 2 years ago by Grant Savage <[email protected]>
changed bool range on get_files

177d8cbddbd5d32cc714249d779cd0ab2c5de9ec authored almost 2 years ago by mitchhaldeman <[email protected]>
Add daily noise levels, bugfixes

901aa43cb50dfc8f69e8f4cae669cf2b4830cda9 authored almost 2 years ago by Caleb <[email protected]>
Fix timespan search logic

b2fb74775e20ab6d27c5940fe7ffe189319a8cf8 authored almost 2 years ago by Caleb <[email protected]>
ambient processing; broad in get_files; option for unsigned

62c9b0d355954f4dfc1e8d6725d08d8575f87004 authored almost 2 years ago by mitchhaldeman <[email protected]>
fix mistake with generate_parquet_file

07d7ecc14197c7b759a0fb65282b348862a6a08b authored almost 2 years ago by Grant Savage <[email protected]>
Merge pull request #20 from orcasound/documentation

Documentation

1dc6f97b480024a5e724df49e762a9af2c9b6afc authored almost 2 years ago by Caleb Case <[email protected]>
Merge pull request #19 from orcasound/dashboard-tabs

Dashboard tabs

8651c5300e482025d633a45c8a7b7eb2b0850d3c authored almost 2 years ago by Caleb Case <[email protected]>
Merge branch 'main' of https://github.com/orcasound/ambient-sound-analysis into dashboard-tabs

2573986fdf49bf080d5a2d2022668b9f8a6bed3f authored almost 2 years ago by Caleb <[email protected]>
Add accessor exmaples

01e18f0e3719714dd772308eba6736f29f476a6d authored almost 2 years ago by Caleb <[email protected]>
Update defaults on accessor

d4ece9ad08441fdd20b862cea317cf46659d0723 authored almost 2 years ago by Caleb <[email protected]>
Add readme on NoiseAccessor

d61319590ed3e3344ab6d7e2cb7f8da405ebc4c1 authored almost 2 years ago by Caleb <[email protected]>
ignore temp.py

834c7588ee7bbe2626737882cbbffaa40d2b56d2 authored almost 2 years ago by Caleb <[email protected]>
remove unused files

9a6e91420e0353a2d8034dfb9d53f2a766360ebf authored almost 2 years ago by Caleb <[email protected]>
Reorg into subfolders

a50cb5b72e33daf2804493c4606419f51888b043 authored almost 2 years ago by Caleb <[email protected]>
bug fix for pipeline.py

beeca6cad98dcf774927b9a8adb56afd75f77ad4 authored almost 2 years ago by Grant Savage <[email protected]>
updates generate_parquet_file to generate both broadband and octave parquets

a5e28d8319bb62d8725b0cd8094305e122c2fdd6 authored almost 2 years ago by Grant Savage <[email protected]>
Use new filename genration args in upload file

7f58d79ab33a7494c7b65b12ecddba0861df6d61 authored almost 2 years ago by Caleb <[email protected]>
Parse broadband in filenames

dd5357d15754f5a157202058ccfa97b2e0bb9729 authored almost 2 years ago by Caleb <[email protected]>
boradband option to fileconnector filename generator

27a5ec64e9f1e0b9b4391c7aeaace179140effeb authored almost 2 years ago by Caleb <[email protected]>
Merge pull request #18 from CaseCal/caleb-visualizations

Caleb visualizations

968ed7371a95356cdf15c289b32c807d5ae33ea8 authored almost 2 years ago by Caleb Case <[email protected]>
Update st app to use analysis obj

fd21801bcb13b7980e4b0f3e3912b8ee65dd7fcc authored almost 2 years ago by Caleb <[email protected]>
Merge branch 'file-accessor' of https://github.com/orcasound/ambient-sound-analysis into caleb-visualizations

5658795946c907fc3769d5fed78e30d9dead061c authored almost 2 years ago by Caleb <[email protected]>
Add timestamp rounding option

8103154e2eb0f6a666055f1283e231265ca374a6 authored almost 2 years ago by Caleb <[email protected]>
Basic accessor object to abstract file access

3d523ddd1f114158f16ea290580f2b7fd36553df authored almost 2 years ago by Caleb <[email protected]>
Band range selector and round times

b18c0bb2d0d4365a9e59f84b9baac3354ff65d4b authored almost 2 years ago by Caleb <[email protected]>
Add theme and slider select for bands

a2a959c9afc6550f786160f994998664576209d7 authored almost 2 years ago by Caleb <[email protected]>
Streamlit app to show daily noise

2d1f4128449100bb8122009093ce4a78c896221d authored almost 2 years ago by Caleb <[email protected]>
File to average daily noise

b6e67c794f4d3926947f8aac66a4cad0395d6b76 authored almost 2 years ago by Caleb <[email protected]>
Prioritize octave naming over hz naming when both exist

aa8c7fab479cb1694774c15b84f524fdeadb1518 authored almost 2 years ago by Caleb <[email protected]>
Save pd columns as strings

ff6d0f83e552b1a34861d9a7a3320c56ae6d12c6 authored almost 2 years ago by Caleb <[email protected]>
Fix internal pipeline args

ed359ea7ecedbaefeba842ea824dafd1b664c6a8 authored almost 2 years ago by Caleb <[email protected]>
Merge branch 'main' of https://github.com/orcasound/ambient-sound-analysis

406209f0a946a91b0d64dc4ec4ac229604d8a19c authored almost 2 years ago by Caleb <[email protected]>
Cleanup

b75ea71318ab3bb8528145b260c31060ab57de0d authored almost 2 years ago by Caleb <[email protected]>
changes to pipeline.py

afa35343fe38af0a0cdf4f633f0835397783c5dc authored almost 2 years ago by mitchhaldeman <[email protected]>
Merge branch 'pipeline-object' of https://github.com/orcasound/ambient-sound-analysis

decc875a01b25a7db7419059dabd21b9c01c7d28 authored almost 2 years ago by Caleb <[email protected]>
Ignore real config file

cf77aedc6de5aa03e834af6eb14a5bfd7f9cd56c authored almost 2 years ago by Caleb <[email protected]>
Use config file for auth

b5bee458e264b23bc0bf580bfe5c1adbfaabeef7 authored almost 2 years ago by Caleb <[email protected]>
Merge pull request #10 from orcasound/pipeline-object

Pipeline object

9bfd5a7d9b5e514bd1dff5d59c0e2ef25d0c0219 authored almost 2 years ago by Caleb Case <[email protected]>
Parse octave bands in filenames

944cc61941b408349ef4c0f6e796c23eac7ddf3b authored almost 2 years ago by Caleb <[email protected]>
Add write destination settings to Hydrophone Enum

4a18c06f743a5a777bef924b2e4a49291add48d0 authored almost 2 years ago by Caleb <[email protected]>
colormesh plot + revert hydrophone change

4862ba1db0ac86ccf1ca12deedad2ba3e39e9f46 authored almost 2 years ago by mitchhaldeman <[email protected]>
fixed hydrophone tuple

706b37148d3f34ef8b2b1e40bc995dfaa2b0e6bd authored almost 2 years ago by mitchhaldeman <[email protected]>
Added band arg documentation

07d50a2e14fd2ad1a8ea34051539a5f9fd4fef41 authored almost 2 years ago by mitchhaldeman <[email protected]>
Revert "add band arg documentation"

This reverts commit e0a0a7dfc5d8c3390e0ca100fcbc6f611ed54e80.

e88610226548e92be77de3b68916e93b7c8e556c authored almost 2 years ago by mitchhaldeman <[email protected]>
add band arg documentation

e0a0a7dfc5d8c3390e0ca100fcbc6f611ed54e80 authored almost 2 years ago by mitchhaldeman <[email protected]>
Remove pcen from default transformation

54b7bb2645923df7ec220da9c69bdc18efd69af3 authored almost 2 years ago by Caleb <[email protected]>
Fix format of psd return values

1982f2f669e1bfbb78d6436cc0aad2717fa8cab5 authored almost 2 years ago by Caleb <[email protected]>
Add todos for better documentation

ca672b3057ea0ff6341762b2610368d5dcfc1ca0 authored almost 2 years ago by Caleb <[email protected]>
Batch file generation

e5bea7d4bb0b8845013e44cda7b52aab077521f7 authored almost 2 years ago by Caleb <[email protected]>
Return filepath of generated PQT file

89b1c4a8b180ab1385ebc0e862016cbb23088f2b authored almost 2 years ago by Caleb <[email protected]>
Change wav_to_array to accept transsform list

eb7e2cb1b5c37dcf8dd9432cb124ac193342c66f authored almost 2 years ago by Caleb <[email protected]>
Convert pipeline to object

c7f5b8b43616c6e0893b3fb3a68e654789297ad6 authored almost 2 years ago by Caleb <[email protected]>
Add name to hydrophone info

2d4cbfac00a80364e5ae20b2dd1b84cd2c9c54f2 authored almost 2 years ago by Caleb <[email protected]>
Move Hydrophone info to separate enum with named tuples

4e4f1e919c8ae9cc5b782666c6ef4e282abc3b74 authored almost 2 years ago by Caleb <[email protected]>
Move util into source and rename to acousticc_util

6941f03274baf3a1481b2423008ca514fc854da0 authored almost 2 years ago by Caleb <[email protected]>
Remove unused paginator

e2b2a5a5410f6d38246eec4e4ae8e42501675696 authored almost 2 years ago by Caleb <[email protected]>
Add file scanner filter based on date

3a8073991df52f80996da4a6224c0e478056b5e1 authored almost 2 years ago by Caleb <[email protected]>
Add parse filename function

02e122b4e580ff58599fe943c9d2ec61a997c10c authored almost 2 years ago by Caleb <[email protected]>
Merge branch 'main'

60449323fe8031a00e81e6575ba40a0cbaf12d3c authored almost 2 years ago by Caleb <[email protected]>
added delta t,f args. fixed broadband level calc.

8ac3906f80fa2f6d449dfa1a8e661353318369f1 authored almost 2 years ago by mitchhaldeman <[email protected]>
added octave band functionality

af5eb9b8313e2224f43cae7c8d54acbe68aa1edb authored almost 2 years ago by mitchhaldeman <[email protected]>
unit tests

d4dd2e971f7b38058c40b91b93eb4d1ea180585a authored almost 2 years ago by Caleb Case <[email protected]>
Initial file connector

f4782a2bde63d1ec47432c1925c16771249d2ce2 authored almost 2 years ago by Caleb Case <[email protected]>
Use main hls repo now that changes are pulled

f613e276cd859d95cc29dfdbf3a75018f110a025 authored almost 2 years ago by Caleb Case <[email protected]>
added datetime to spec x-axis

fd9769907d8783181b332a743f3a756b37150855 authored almost 2 years ago by mitchhaldeman <[email protected]>
added datetime to x-axis

184812366d25307b4d4cfa7bf9c423622592f331 authored almost 2 years ago by mitchhaldeman <[email protected]>
Initial file connector object

443905ff9b308032dacacf206ba25c35561ad6fb authored almost 2 years ago by Caleb <[email protected]>
Meeting notes 1/30

5765d3b2f5c9c47c21a04108b578e9ffde845d71 authored almost 2 years ago by Caleb <[email protected]>
Ignore parquet files

e717f8ebe7db37461dd5ae50e6ec2ad73e37fef1 authored almost 2 years ago by Caleb <[email protected]>
Script for generating size grid of pq files

788cea87ab7292e00eb2c849e9e5bd6220368fbb authored almost 2 years ago by Caleb <[email protected]>
Add option to pass args through pipeline to wav

e931ef9a03ee182efc6c612db23c9da2648f5cb7 authored almost 2 years ago by Caleb <[email protected]>
Allow overwrite_output option in pipeline

b3daab6d5c5b7cf2575cb342caa71bdd611d1865 authored almost 2 years ago by Caleb <[email protected]>
Merge branch 'streamlit'

398383c5e50079468315fea54e23d77e6950cf1d authored almost 2 years ago by Caleb <[email protected]>
Update requirements.txt

6b8f54a112373c6bfe93f076a7db9881fa4d8be1 authored almost 2 years ago by Caleb <[email protected]>
Merge pull request #3 from orcasound/streamlit

Streamlit

fa5ea8e9f4e324edc4ca5e4eac9c3d1b7dddf7e7 authored almost 2 years ago by Caleb Case <[email protected]>
Merge branch 'main' into streamlit

# Conflicts:
# src/pipeline.py

cb668dfa7cea9e24be29a0da2ce764e0a00b4769 authored almost 2 years ago by Caleb <[email protected]>
changed table index to datetime

ef3fad2ab3fabb14a1dee0b0f5c2b49959a93e38 authored almost 2 years ago by mitchhaldeman <[email protected]>
updates util to limit float precision

f619c75356ac2a121561c41fcd8e870406e3aa97 authored almost 2 years ago by Grant Savage <[email protected]>
updates util to save df column names as strings

24295b7aa5a30df5cbfadc1dbfe71b865ad65fa0 authored almost 2 years ago by Grant Savage <[email protected]>
Added specrtrogram plot func for df data

701378d2b693c418e7a11538d67a3a41e0fde98b authored almost 2 years ago by mitchhaldeman <[email protected]>
Added dB ref to wav conversion, comments

fbd4ed55b7d17f3ff205a0526887df0c09d57f08 authored almost 2 years ago by mitchhaldeman <[email protected]>
Add demo data option

5eb879dca013408d431b0d8c902cc53f6b1aecb9 authored almost 2 years ago by Caleb <[email protected]>