github.com/ome/ome-model commits | Ecosyste.ms: OpenCollective

Fix Eclipse project JAR dependencies.

a928be7654143f12bcd4de5afbe845da1123b154 authored over 16 years ago by Curtis Rueden <[email protected]>

Version before major relax of schema

4dbe36514f91a5214501f8e854e4a4f6e34925d4 authored over 16 years ago by Andrew J Patterson <[email protected]>

Added a new main based on the debugMain that will genereate docs in wiki format.

34a2f7eddf797d43e1e888c2b4935126a884c082 authored over 16 years ago by Andrew J Patterson <[email protected]>

Added first version of annotations used in omero.

3dfcaf1e753b76f60db1e0307b4c228fb3e418f7 authored over 16 years ago by Andrew J Patterson <[email protected]>

Update Eclipse build path; fix loci.apps.flow build errors.

ab5c20a3931db1496eeb766eb35c149ded637023 authored over 16 years ago by Allison McArton <[email protected]>

Added some initial SA blocks. Not yet maped to existing OMERO annotations/

9e538dbdabf9d69ae3e8f051432a685e9c7d6cb9 authored over 16 years ago by Andrew J Patterson <[email protected]>

First go at the new ROI structure. No SA yet.

ccdd41eded6042fc22f540bba7c6d76b7bcf811c authored over 16 years ago by Andrew J Patterson <[email protected]>

Minor changes to text in the index pages.

3a3e1741c876390a326c6f38fbb3526b615e1fd3 authored over 16 years ago by Andrew J Patterson <[email protected]>

Remove OMERO jars from build path to avoid cyclical dependencies.

7eaa4b1d7e38accea06af2053912ff1ec1a30b5b authored over 16 years ago by Curtis Rueden <[email protected]>

Fix classpath to use default JRE instead of Mac OS X 1.4.

0ae2712fedc2819563f30b9e2df4f3933a9f6834 authored over 16 years ago by Curtis Rueden <[email protected]>

Fix regression introduced by r179 relating to 2003FC top level types with odd schema definitions

eda9aa207118f2fa43ed162129fa829ba5442cdb authored over 16 years ago by Chris Allan <[email protected]>

Fixing Unresolved Ref

48e263cb4a959e7d44d339cf84d59dfdad808289 authored over 16 years ago by Andrew J Patterson <[email protected]>

Fixed mistake with am:FormalInput and am:..Output.

c9cfa272565573ce760c9b17f7794cfdda5e6d1e authored over 16 years ago by Andrew J Patterson <[email protected]>

Adding embedded xml as separate files.

db3a72471ca85cf39afe605faf47cb9d2c02352c authored over 16 years ago by Andrew J Patterson <[email protected]>

Adding views of the planes in the IronPlate sample for people to check against.

34118ab44c7e4f6e5666e4499f9157ea092196e8 authored over 16 years ago by Andrew J Patterson <[email protected]>

Adding sample .ome and .ome.tiff files to link to from the web site.

493d77ba72c91ede332cb4eccbc7f06add3d5618 authored over 16 years ago by Andrew J Patterson <[email protected]>

Updating to generateDS-1.13a and patching with changes from 1.11a previously committed.

c81c26eb8f565c2c7456dae2d1ca95e966b83479 authored over 16 years ago by Chris Allan <[email protected]>

* Fixes issues with back references (totally broken previously)

* Specific type resolution fixes which were made apparent by Correction and Immersion

332750b8f19b14f38fa37b5370a2de753fdef2b6 authored over 16 years ago by Chris Allan <[email protected]>

Minor Update 2008-02 Version 2 May 2008

beee05085ee4a27b62bfcdd8386368d39a0d3d14 authored over 16 years ago by Andrew J Patterson <[email protected]>

Changed to reflect the proposed release for May 2008 (2008-02 Version 2).

This allows people to preview the files.

de5344e8297d1fdb2cc6df0f8219bcedf251b4d5 authored over 16 years ago by Andrew J Patterson <[email protected]>

Adding V2 of the 2008-02 schema.

Only changed schema is ome.xsd - Moved to Version 2
The main change is the use of ObjectiveRef wi...

3f5441bb5791a20acc6e7280c0e705eda2e027d8 authored over 16 years ago by Andrew J Patterson <[email protected]>

Adding first version of the Editor schema

d7be571307fc04bc0e2dfd2553597d730d31e88c authored over 16 years ago by Andrew J Patterson <[email protected]>

generateDS bug fixes:

* Nested simpleType definitions now handled universally (booleans are insufficient)
* New style...

6c57e91175b13188f5b2b1992af21de4263880c7 authored over 16 years ago by Chris Allan <[email protected]>

Fixed type in URLs of the schema files

26069650fcb61bd4a3d2ff731c223c806dd9d70d authored over 16 years ago by Andrew J Patterson <[email protected]>

Eclipse project configuration files.

3d438cc21021aa819946e0d49775fd3d9cfdd2f2 authored almost 17 years ago by Curtis Rueden <[email protected]>

Testing svn connection

6da26858d15c40d1619c0de9f8ea73d1afd1dd24 authored almost 17 years ago by Andrew J Patterson <[email protected]>

Minor edit to test svn connection.

72c9121c75d924119a7d441cd790cabac5ff574a authored almost 17 years ago by Andrew J Patterson <[email protected]>

Minor typo change

da89dc2ca91f6e35f735ffc1b56642537a8b9868 authored almost 17 years ago by Andrew J Patterson <[email protected]>

Updated html pages for Schemas to 2008-02 V1 Release

8daa56ff9a7c726d01d13098abff9ceda9782f1f authored almost 17 years ago by Andrew J Patterson <[email protected]>

Updated schema to second draft - Release Candidate.

462b1b649ea21dad1c1c4b0ae61a1cda1b85ff02 authored almost 17 years ago by Andrew J Patterson <[email protected]>

Updated schema to second draft and changed schemaLocation to use repositery.

38d48e012db62118aac61e887335e1ca124b9abd authored almost 17 years ago by Andrew J Patterson <[email protected]>

Second draft version for Curtis to look at.

c94cfa6f45baf360036d5df84a61da446388d892 authored almost 17 years ago by Andrew J Patterson <[email protected]>

Added second draft of 2008-02 schema

146dc484db6a366cf5f7724996edfc1c511e3007 authored almost 17 years ago by Andrew J Patterson <[email protected]>

Additions for Curtis that allow access to the actual node elements that reference nodes "reference".

019d5b3d6bacdb4cf21c89864910c53f7eb146f1 authored almost 17 years ago by Chris Allan <[email protected]>

Updating with Curtis' new template:

* Adds missing CData setters
* Fixes extraneous whitespace
* Signatures to access *Ref node ty...

8c8a1dcf28271829be2bb83a4ec28845f0c010a8 authored almost 17 years ago by Chris Allan <[email protected]>

Fixing version numbers

af77963e5b0c27f77ad2c6a8228f6854fea23b17 authored almost 17 years ago by Andrew J Patterson <[email protected]>

Adding first draft of 2008-02 schema

26c326cac6edce0ad766de802dfcba1796469927 authored almost 17 years ago by Andrew J Patterson <[email protected]>

Adding first draft of 2008-02 schema

17d4ed549c395a06870641e70dbc53d17d41f788 authored almost 17 years ago by Andrew J Patterson <[email protected]>

Adding first draft of 2008-02 schema

bf5056a3009fc0268b3b70d3d516a5338d2a7bd6 authored almost 17 years ago by Andrew J Patterson <[email protected]>

Working changes as I am updating the schema

ee3129ad478b825a0be1c831d494575edd1afef9 authored almost 17 years ago by Andrew J Patterson <[email protected]>

Added link to the autogenerated docs

6c7c2de0ef07c5fa7a3d62ee78c7b065aeee946b authored almost 17 years ago by Andrew J Patterson <[email protected]>

Support a few further things that Curtis needs:

* Accesors for objects that follow OME XML reference naming conventions
* New convenience const...

cbee692cc438c799b1d2d3231f46a3f3e1b98d4a authored about 17 years ago by Chris Allan <[email protected]>

Updated to referance named version

e942789d72de51f222886d0086b2e5e8ff61763d authored about 17 years ago by Andrew J Patterson <[email protected]>

Synchronized with generateDS.py version 1.11a.

f0a4ef7b449e281e1ffba293bfe5ac1fbb465093 authored about 17 years ago by Chris Allan <[email protected]>

Initial commit of OME XML Schema document code generation tools (xsd-fu).

1982d8eaa368906f9110df132d63f02afd164b98 authored about 17 years ago by Chris Allan <[email protected]>

Updated schema locations to pull in these versions direct from SVN

00253f9a663c3662ff291d106cbd7e817a30719b authored about 17 years ago by Andrew J Patterson <[email protected]>

Created a versioned copy of the files in the release folder. This can be used by the validator code to check for compatibility with specific schema versions.

5738565940faedce1bc0ffaebb50e23cc6b0631f authored over 17 years ago by Andrew J Patterson <[email protected]>

Changes for September 2007 Minor Version release

d9a73fcb837c1f0ed8bb19fbbb75f7d5acd937d9 authored over 17 years ago by Andrew J Patterson <[email protected]>

Fix to import of XML namespace

a6232f4a343b57e8cb6658fbebea48088823746e authored over 17 years ago by Andrew J Patterson <[email protected]>

Added new code from Ilya and fixed the xml:lang problem.

cdfb409105f9728d114a5f80b4336ac00da41c92 authored over 17 years ago by Andrew J Patterson <[email protected]>

Updated version numbers in files and final tweeks to the new schema.

cbdc4e8be423f353c776c442fd4d8ba78485f457 authored over 17 years ago by Andrew J Patterson <[email protected]>

Applied Version 2 - September 2007 changes to schema and improved Tiff chacks in validator

442cd113ca69c40e52989e9bca600da9a9300df6 authored over 17 years ago by Andrew J Patterson <[email protected]>

Applied Version 2 - September 2007 changes to schema and improved Tiff chacks in validator

1f024446755f4944f9b51713601fe4ee06860291 authored over 17 years ago by Andrew J Patterson <[email protected]>

Update to have alternates

1d0b2e6b006fd44ec1e430fb2c94e171bf55ddcb authored over 17 years ago by Andrew J Patterson <[email protected]>

483c59bc4668970fa24dd22daae4fe67798c2a99 authored over 17 years ago by Andrew J Patterson <[email protected]>

Version of complete sample - needs alternates

001719b461d3ee984bf7186286dc8108541b58b2 authored over 17 years ago by Andrew J Patterson <[email protected]>

Version of the sample.ome file updated to use the June 2007 schema.

f3a7e48808f145aa984350590baf809f72d8de5a authored over 17 years ago by Andrew J Patterson <[email protected]>

a85e4f57cf606f893c1f37a5ae749b1013f4b857 authored over 17 years ago by Andrew J Patterson <[email protected]>

Fixed case in pixel and pixel type

989bda5934380f17b48f80133b7d2ea00690c9dc authored over 17 years ago by Andrew J Patterson <[email protected]>

Fixed case of refrence to ome.xsd file

f4209f018ccf21dbb228abc1376cf72cef910d9d authored over 17 years ago by Andrew J Patterson <[email protected]>

Fixed case of refrence to ome.xsd file

22dd8dbc3c57ad79921bdf700d4a2d917c121dc3 authored over 17 years ago by Andrew J Patterson <[email protected]>

Final changes to the SPW to remove ExternalDBRef

Adding the final version of the XSD to the web site

132d893020025a3a8c9d4f2b9cdb0aca45f4cc7a authored over 17 years ago by Andrew J Patterson <[email protected]>

Moved Omero Database diagrams

0e5d4d435053ad50771b60930e12066048dd070a authored over 17 years ago by Andrew J Patterson <[email protected]>

Added files for Schemas directory on web site

129d82d8b97e6bcd051efd3f5df4495b7d6ea1a2 authored over 17 years ago by Andrew J Patterson <[email protected]>

Re-arrange the directories to work better in the ome-xml.org site. Old structure came from the OME CVS repository.

be1c21645c6d537e5e1ef9bd0cb56a4cae41aebd authored over 17 years ago by Andrew J Patterson <[email protected]>

Updated Schema Location and fixed DataHistory namespace

2a902a281c70ca7daafe7a1199ec8211c9fcc29a authored over 17 years ago by Andrew J Patterson <[email protected]>

Changes before restructure of directories

514fcc5811113259723151bd536a96cfd221a36b authored over 17 years ago by Andrew J Patterson <[email protected]>

Removing connections between the SPW and dataset methiod of organising images. These were left over for the old model.

5a328c1875f4d335c8b2eab745a339196d9945c8 authored over 17 years ago by Andrew J Patterson <[email protected]>

Removing connections between the SPW and dataset methiod of organising images. These were left over for the old model.

4cd4c5f1f38768c2e5e5b7d7aeac9b9fbd9a98ac authored over 17 years ago by Andrew J Patterson <[email protected]>

Removing connections between the SPW and dataset methiod of organising images. These were left over for the old model.

5c430157aae12d9c38114b490200e3f748d9aeb5 authored over 17 years ago by Andrew J Patterson <[email protected]>

Updated the documentation

8071ede02ec57afe0a4d85adc79c3aa6d3bbe8ae authored over 17 years ago by Andrew J Patterson <[email protected]>

Fix WellSampleRef in ScreenAcquisition.

783d997bf9fa5cdc0bf37ba7fc8c0a91428ed0e4 authored over 17 years ago by Andrew J Patterson <[email protected]>

Re-write of a lot of the file. Fix problems in linkage of Reagent, ScreenAcquisition, and WellSample.

68482f18859c11eaf570f777f18d063c0280b5a7 authored over 17 years ago by Andrew J Patterson <[email protected]>

Adding Filter and Dichroic directly to instrument and adding a ID to Dichroic

7b8127afc90c9d42d37ec3190b9766051ea0fbc9 authored over 17 years ago by Andrew J Patterson <[email protected]>

Changes to FilterSet structure

55028021cdceb18e056bd56b6b3a8e594788648c authored over 17 years ago by Andrew J Patterson <[email protected]>

Fixed typo AmplificationGain

222c75022c2267a78ff871757777821f214c6071 authored over 17 years ago by Andrew J Patterson <[email protected]>

Update the ID regex strings to match the new format.

Update the sample files for confirm to the new regex.

c635b8a4e9405a1c0c44631f330d5a67f76b48a0 authored over 17 years ago by Andrew J Patterson <[email protected]>

Changes after consultation.

Adding dummy example files - structure ok, not real data
Adding perl scripts to help with checki...

11ea03fdacdf36db907091623079e9da14753d60 authored over 17 years ago by Andrew J Patterson <[email protected]>

For Review

c23a3706f826f1e8416d2e97dcad52332d486bdc authored over 17 years ago by Andrew J Patterson <[email protected]>

Renamed Feature to Region

5e82734178a56ea62323ee6fe675cbdb8aeca639 authored over 17 years ago by Andrew J Patterson <[email protected]>

Renamed Feature to Region

bbe10c6d35a98a2932ac63b8e20ed010c6f8d55f authored over 17 years ago by Andrew J Patterson <[email protected]>

Renamed Feature to Region

e10c92deb4f92ccfb8d63f9e212def2beffb7a0c authored over 17 years ago by Andrew J Patterson <[email protected]>

Changed way filters work

8d6c2e6fd40ce0054ff10821ae745e442f77ffe9 authored over 17 years ago by Andrew J Patterson <[email protected]>

Added PockelCellSetting to LogicalChannel

160401c981d3087cb3059d0fd0f60df2dfbbbcb3 authored over 17 years ago by Andrew J Patterson <[email protected]>

Moved all files to using the new major/minor version format.

Major is stored as a date (2007-06) in the namespace URI.
Minor is stored as an integer (1, 2, 3,...

80ff370b490ab9d024618225077ee470fc854734 authored over 17 years ago by Andrew J Patterson <[email protected]>

Improved comment of Lenght in BinData

5cc6819cc043cf084704bdc596893a89f7e09e47 authored over 17 years ago by Andrew J Patterson <[email protected]>

Adding new files - Database Diagrams generated from the database for the Omero Server

7082674b09704f89d0bbbc8be50b0c0bbfefbab5 authored over 17 years ago by Andrew J Patterson <[email protected]>

Added Plane

Applied changes to Pixels & Image
Renamed Feature to Region

bd141d7920af66dd33abca277d78b7c60ef4dd02 authored over 17 years ago by Andrew J Patterson <[email protected]>

Finished tying MicrobeamManipulation structures to Expriment, Logical Channel and LightSource

31d03ae67c8f33fcd12591824aa975493ab8125d authored over 17 years ago by Andrew J Patterson <[email protected]>

Added MicrobeamManipulation structures to expriment

1f0eac1c6eac5575fded1d3f218f8879462083fb authored over 17 years ago by Andrew J Patterson <[email protected]>

b54b626c19c014f8f1f21a9628a3bb6363258db6 authored over 17 years ago by Andrew J Patterson <[email protected]>

After Save!

98508978b8be94eb4e73f6610d3e00ab02b0d171 authored over 17 years ago by Andrew J Patterson <[email protected]>

In middle of filter/filterset changes

339f6aaa3f922baabcda826e971e85d3a2927898 authored over 17 years ago by Andrew J Patterson <[email protected]>

Part way through making changes fro the Evolution page. Following definations are missing and give arror at present: SecondaryEmmisionFilterRef, SecondaryExcitationFilterRef

6eab8ff2b6949e18ce36021960a2907c41bbc600 authored over 17 years ago by Andrew J Patterson <[email protected]>

Few minor edits from Madison

e7684fac275474e9c974a84c6e811f946b88074b authored over 17 years ago by Andrew J Patterson <[email protected]>

Minior changes to the spacing in the file

3b73ed73a60e4b13b9cb491422404da29ad886d5 authored over 17 years ago by Andrew J Patterson <[email protected]>

Added full set of references between file objects - not completed as some refrences are not needed and there the constrainst are not correct

342a38dd8aa6e66629d6e2dea6110d0d32f47880 authored over 17 years ago by Andrew J Patterson <[email protected]>

Rename project file to avoid confusion

Apply main structure cnages ot the OME and SPW files - ref lists not completed yet

93c6458bf07f1d2ccdcbd97a952b34782e19069a authored over 17 years ago by Andrew J Patterson <[email protected]>

Fix typo in namespace and add entries moved form OME:

<xs:element name="Screen">
<xs:element name="ScreenRef">
<xs:element nam...

548c74ebb8047ecc9397902e1d3bfbf23c1f827a authored over 17 years ago by Andrew J Patterson <[email protected]>

Remove items moved to SPW file

<xs:element name="Screen">
<xs:element name="ScreenRef">
<xs:element nam...

a6b0a26e23b8bfe5bfc8286876c9799de915ad22 authored over 17 years ago by Andrew J Patterson <[email protected]>