github.com/ome/ome-model commits | Ecosyste.ms: OpenCollective

Removed redundant Institution.

9607fb9d366f1ab6a5929f6d867c2eded6ba1bc8 authored over 15 years ago

Adding small text xml file.

059850d55509ac02a971b81142e946297ea60790 authored over 15 years ago

More minor changes

2b258268041ead85f7f0ae5157955197bdfcd038 authored over 15 years ago

Added RoiLink methods to MetadataStore/MetadataRetrieve. These are not yet called by any of the readers.

72b1aa049a79d7c3fe136b4b6e7452ba3d6f5d8f authored over 15 years ago

Testing ScreenRef constraint.

0a53dc0a4963a63dcecd6d04132f60ca7e64f7de authored over 15 years ago

Removing ScreenID and ScreenRef objects and replacing with Keys and KeyRefs - Mk2

467961404d36fbb26939374890e5167ebc03132c authored over 15 years ago

Removing ScreenID and ScreenRef objects and replacing with Keys and KeyRefs

629be5417a7451bf0a2a73e255d602de1f5c487b authored over 15 years ago

Updated ShapeDisplayOptions

22a746a07a0f4ec7b7b56d23ac8e4c2c6dce2bc2 authored over 15 years ago

More updates including moving Channel to below Pixels

696eb659ed316b2e3d8e90434107addbee8bb9d6 authored over 15 years ago

* Added setDichroicID(String, int, int) to MetadataStore.

* ZeissLSMReader now populates TransmittanceRange and Filter.Type.

1978b24727e8a4a9af09ab68ff22e9452b348354 authored over 15 years ago

Other minor tweeks.

f0f3dd9836367738ee6b5e2c70c5b8999ceb0905 authored over 15 years ago

Added Constraints for SPW part of model to the IDs used.

Added a sample document that shows each broken ID example.

bd67836960b50230c148f1f0641e86c65d4a9d19 authored over 15 years ago

Changes from yesterday's meeting - mk 2

47b556a8bc81e25153228cb8f9a7d357be91eab6 authored over 15 years ago

Changes from yesterday's meeting

f905917aec26ec4769b689cf1ebaadf3cf197075 authored over 15 years ago

Doc changes

43f18b4507cab51678eab1f72b9aa33cef8c7fd3 authored over 15 years ago

Further ROI Updates

ba8ca1f275db9645deccd712bb86558786c693a1 authored over 15 years ago

Fixing names in ROI, merge LogicalChannel with ChannelComponent to become Channel and other updates forn Tuesday.

b9221981a246d92d554a05ac8f64d73dad2b9518 authored over 15 years ago

A major reordering of the elements in ome.xsd to a more sensible order and some new comments.

cc0136e3cf3ed3b3fa048ff7844f87671a104fed authored over 15 years ago

Updating location used for ROI schema and location of BigEndian

c6e16dc0d5c9644ac4fa0ff40eaf3f00b98646fd authored over 15 years ago

Adding major changes from Friday meetings

1e74ff1c9120e56fbebafe99b9cd3578bb02e55d authored over 15 years ago

* Added FilterSet.ID to MetadataStore/MetadataRetrieve.

* Parse all Lasers, Detectors and Filters from Zeiss LSM files.

bb501757c298576b5ea127a7c52e091026f9b9bf authored over 15 years ago

Adding the rest of the MISSING markers for the missing attribute docs

5f0470f0e8ecf26f7bd54b6e0f4502b70453a400 authored over 15 years ago

Added call to Will's stylesheet to to the other xsd files and part way through adding place holder for the missing documentation.

d9032e8afc9c7a3db29ec938cef32faac4edea21 authored over 15 years ago

Added call to Will's stylesheet to format the file.

668a5f7fbc84243bdca0000c38e4872927bfa0c1 authored over 15 years ago

Now using svn schemaLocation for import.

a51a63d75592ce34dc6f527b0995c3717a1fb4bd authored over 15 years ago

Large scale changes to the datamodel from this mornings meeting. Work in progress.

Items renamed, moded, deleted.
Still using local schemaLocation for import.

166052d552aea06334cbc34738837d04f80e3523 authored over 15 years ago

OMEXML*Metadata.clearCachedNodes() implementations now clear cached node IDs in ome.xml.OMEXMLNode.

4c3b6f661ca0d41a8f4fa4bd85cf3519b04ec7ce authored over 15 years ago

Added items already listed in my copy of ome.xsd

b1f57e1152be77448be32a1b6041a01ae5eca8a3 authored over 15 years ago

First draft of an XSLT transform between 2007-08 and 2008-02

Tested on Sample-2007_06.ome and passed validation at
http://validator.openmicroscopy.org.uk

4f4a819356b25454585ea63263bb7970243f6908 authored over 15 years ago

Fixing the schema files to be local references and a few other changes susgested since last release.

2c1df1f060642a9fabc2aff8460dbff65e5cdb09 authored over 15 years ago

Roi addition

2ad9bb3f81b2c9149cbe8cff81f96846f8225ec2 authored over 15 years ago

Adding simple ProposedChanges.txt file

65f0f1147286c2e4d2ecbe0a824137b69f08e150 authored over 15 years ago

* Added getter/setter for Filter.ID to MetadataStore/MetadataRetrieve.

* Lots of work on Flex metadata support. Closes #394.

bdf777c5bbb69df603320726833748c62942ec13 authored over 15 years ago

Updating JRE compliance to 1.5

a4964b78fb60c25feb09c00dcfe0378c3be0d102 authored over 15 years ago

* Begin code cleanup for LOCI plugins.

* Disable deprecation warnings for forked components.

5c268a9c98403eec3b205fc7891765c7db4055a4 authored over 15 years ago

Added (experimental) font/color attributes for Shape to MetadataStore and MetadataRetrieve interfaces.

b63599c09b89fc487750e76f9b889da4058a3764 authored almost 16 years ago

Changed capitalization of getters/setters for Thumbnail.href.

39abc4fc591d55c68319bead77a416e10197d984 authored almost 16 years ago

- Added new SPW attributes to MetadataStore/MetadataRetrieve:

* Plate.ColumnNamingConvention
* Plate.RowNamingConvention
* Plate.WellOriginX
* Plate.We...

a71a5c2c2211f264b12076f626281c37e9e74ae6 authored almost 16 years ago

The first letter of each ROI attribute is now capitalized in the MetadataStore/MetadataRetrieve methods (e.g. getShapetheZ becomes getShapeTheZ).

0f8078e83df4a136ceba34c7c4d2adcb52cfda8a authored almost 16 years ago

Switched licenses from GPL v3 or later to GPL v2 or later.

9c00ecdc93d9be1e695a153693c9d9b52313ee4d authored almost 16 years ago

* Fix problem constructing OME-XML root node when xmlns is specified with

explicit ome namespace (i.e., as "xmlns:ome").
* Throw IllegalArgumentException for bad arg...

1c8322237103f8cd9bcd2b942a902a605da3cd41 authored almost 16 years ago

Fix some copy/paste problems in the error output,

and add simple compilation instructions.

6b93cb4d19938e398f646d5ab4aceb381ebc3029 authored almost 16 years ago

libxml2 OME-XML writer example.

ec967a62fc25980f46c0e37433310ea97865b8bc authored almost 16 years ago

Better build system for Bio-Formats C++ bindings on Linux.

00c6fc05f5e2b2a1e3654037c6e66f7ced3a20a3 authored almost 16 years ago

Cleaning up to sync the last release and get ready for new changes.

af7728053b078bd625bb2466c65176304d406ca7 authored about 16 years ago

Cleaning up to sync the last release and get ready for new changes.

9b15a942acc8e6cedda8b5197cc9e8f8fe8726d1 authored about 16 years ago

Fixing comments.

2a8da81d6936c64fffe48937e47fc5344e3f9ff2 authored about 16 years ago

Fixing name in comment.

cde5ed4d5c59057b6d83e673cc5a2590bf9c792c authored about 16 years ago

Several additions to the MetadataStore API, including the new ROI model and a first attempt at supporting both Filter models.

cf748bc4d49e7a0bedab91578037099b50b8494a authored about 16 years ago

Added the Iris property of Objective to the MetadataStore and MetadataRetrieve interfaces. Note that this property is not supported by existing OME-XML schemas, but will be present in the next release. It is being added now to support OMERO's needs.

83c788884fdd544ed073d2cc42b9a2f81a4e2c3f authored about 16 years ago

Updated DetectorSettings entities and added ObjectiveSettings entities.

e0c98ed6cd46ae4847649432d06a603ed2a76dad authored about 16 years ago

More verbose variable names for cached nodes, to avoid name clashes.

43ab1d29bfcb7e56a0cf3af6c6767ac5e0e11975 authored about 16 years ago

* Add exec target to each component.

* Miscellaneous tweaks to build system.

482a3b22768f3b5c5dde0fafea99dd1ca694db13 authored about 16 years ago

Fixed release name in comment at top.

d6862290397b9840f34d11c8dcbcae0c21296651 authored about 16 years ago

Backup of working copy changes

a90bfc866151adc7d47cfa54ab1e6fb96f400314 authored about 16 years ago

MInor update to fix typos

83c374bf32d5fa0e8fe6d2fe211a91c68183fff4 authored about 16 years ago

Fixing data.

8fd13ae39bed5d6cf1980d4db5bd9eb534c53a05 authored about 16 years ago

Fixing typo.

6950be9ca816c2982952c2f760c317fba58ee7b5 authored about 16 years ago

Linking to docs for 2008-09 schema.

c7e5d405279bb55010f499c0f7a5c2a1fbf91975 authored about 16 years ago

4a9f6a6bf2512e3284ebb9bf3ef0727525e25105 authored about 16 years ago

* Add SVN revision token to source code filtering,

so that About dialogs can report the revision number.
* Update the Image Viewer About dialo...

5d1d0b9b603b4523a62144f3545d3b47a6329695 authored about 16 years ago

Updated before release to enforce EITHER TiffData or BinData not a mixture.

c196d1334e25675d75343e7ffd062af4559b24bd authored about 16 years ago

Add 2008-09 OME-XML schema version (and fix a code generation bug).

7ea2447cdc72f763d30111041982409bac68e68a authored about 16 years ago

Add 2008-09 version to OME-XML Java library generation script.

c193623e69a195f634cceddc3ad90b3f953172ab authored about 16 years ago

Fix a bug in node retrieval cache.

b1c9f7203e2a9b04f2baac21ef2e9edaa6c25276 authored about 16 years ago

Add IMetadata interface for metadata implementations that support both

MetadataStore and MetadataRetrieve. Cuts down on class casting when working
with OME-XML-based me...

8d434f2add07a7065e5212ba46973daa80c0cb7c authored over 16 years ago

Moved several common I/O and utility classes to new component.

5a9ed4a998ff5e2416f1ea443db989326048b939 authored over 16 years ago

Fix compile errors.

e1af9cfa7e64d46b7cac126079399458b1035ebe authored over 16 years ago

Adding schema files for 2008-09 V1 release.

c892185aa6b3e96fe9ffd5ed885949b02fa9ec18 authored over 16 years ago

Adding files for 2008-09 V1 release.

6c1f7b57a7fde73d003daa48259ec7da8412af0e authored over 16 years ago

These files were only here to show a proposed version while it was being discussed. They are confusing as they are no longer current.

5dd42be71d09f0c6c6ba385d50850b0e8c8298b8 authored over 16 years ago

Added another main to generate some tab data for a spreadsheet. Need to move these to somewhere else.

e8d3d5936a5dc6b5d15cc7f0623cc5b6c60d801e authored over 16 years ago

Add DefaultPixels property for Image entity.

c71cbbf7b68651c86cf0f088dda83e598490487d authored over 16 years ago

Allow get/set methods for reference attributes to work with ID String.

7b23b08279c9b416483779c95db2112583cff36e authored over 16 years ago

* Remove OTFSettings entity in favor of OTF property

for LogicalChannel entity.
* Support for including Experimenters in Groups
via Experime...

53ae12ba7df01509485f84f6b3f0f1ec0c4ae85f authored over 16 years ago

Clarify referring vs referenced node methods.

Eliminates most of the OME vs SPW template differences.
Also add a getBlahRefCount method for ref...

779a6085c5c9b8ce508f73e318ebd834b334b5b6 authored over 16 years ago

Clarify referring vs referenced node methods.

Eliminates most of the OME vs SPW template differences.
Also add a getBlahRefCount method for ref...

effcce9c8d726b484f967237914d94302507de29 authored over 16 years ago

Add OTFSettings entity for associating an OTF with a LogicalChannel.

52a9b708056c67fe7f615bccc9eb696778d546d8 authored over 16 years ago

* Ugly hack to speed up metadata store population.

* Add Experiment entity with some basic properties.
* Fill in a few javadoc blurbs.

abbf2f5c171bd0ee89e3b01b92e6081c41974ce4 authored over 16 years ago

* Include methods for obtaining one child node at a time.

* Clean up whitespace.

2eaaf2e35d3348c3c22f1f8c53946f18ff2ed18f authored over 16 years ago

* Add hacks to the OME-XML Java library script to fix compile errors.

* Augment templates with a method for obtaining an individual child node.
* Remove extraneous...

cdd4db89a34ef12586b5eb4748789d677f598fad authored over 16 years ago

Add methods for getting a single child node or element.

14face6ba8a5061702e442e41fcf4540ee7baeaf authored over 16 years ago

Fix more unused import warnings.

63762d4fe64f72d1e493614e6d2662b3c7050ca1 authored over 16 years ago

More template tweaks, to eliminate unused Vector import.

5668369e1382713bfbcc6865af34088be24ae5a5 authored over 16 years ago

* Tweak schema class template

* Add second template for SPW classes
* Add script for generating source code for all schema ...

7ac9f54c86e6b941eaff3c779b5c65fa27cf6f33 authored over 16 years ago

Fix unused import warnings in OME-XML Java library.

ff31eb0b07866c10a3838879b334f0ff8a0c2451 authored over 16 years ago

Add separate Eclipse project for each component.

601b5e62c1d7d002f73bd3e838f2302edb55d157 authored over 16 years ago

Relax of schema as outlined in ChangesForSeptember2008 on ome-xml.org

d055f0432e9c8ed86f7c556482362ab2777196f9 authored over 16 years ago

New Oxygen project layout

0b52f47ded40ec9e74e115f4a3a145cc53293cf3 authored over 16 years ago

Merge changes from the roi and sa version of ome-roi-sa.xsd back into ome.xsd

8d50dcfa4abf23ad97d46800ce15674252c25a2b authored over 16 years ago

Fix typo in annotation

4937785bdd3ebc021dea50644ee3160f226aeb09 authored over 16 years ago

Added unknown types after talk in meeting.

243de8cc97902ae84d04570cb4a382fcefa869e9 authored over 16 years ago

Made first set of changes from meeting on 10th

cc1bdcb783190c3534cd20f15c714d3cca1824fb authored over 16 years ago

Version presented in meeting 10th Sept 2008

84bbfc11e514559cf2956095262810ff90667cd3 authored over 16 years ago

Version presented in meeting 10th Sept 2008

033d4fed7668ad56dbef5a3870e9324103f4bcf7 authored over 16 years ago

Fix javadoc typo.

3daaa52720932b7af3a374248703284629534465 authored over 16 years ago

Bring project documentation up to date; switch ome-java.jar to ome-xml.jar.

383dc0960282cf0f497726622318635853cb0f69 authored over 16 years ago

* Add OME-XML Java library component.

* Fix problems with LOCI Software javadocs output.

7c54009acba2d9f8fe47c97076c5d92e1e8187d3 authored over 16 years ago

Update Trac and SVN javadoc links.

6802e1ce5835e095a8132dd651420d36a130d39e authored over 16 years ago

First cut at component-driven source code modularization.

* Preserves backwards compatibility with root build script where possible.
* Can build each i...

2ad3d9bda3aeeab3d49caf84aa2e20e60e817103 authored over 16 years ago