Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/ome/ome-model

OME model (specification, code generator, implementation)
https://github.com/ome/ome-model

Fix some Eclipse problems and warnings.

97371ef4d8c2c56633ff528ee484ab5964253ac1 authored over 15 years ago by Curtis Rueden <[email protected]>
Metadata retrieve and XsdFu updates to allow subcommands.

ad0a59c34e67e72f7fdd8f040bf654d4bb053760 authored over 15 years ago by Chris Allan <[email protected]>
Moved ROI to be top level and added ROIRef in its place within Image and MicrobeamManipulation.

6fbdae19f1ebf5b4bf2252cbd69379ea9ec5315e authored over 15 years ago by Andrew J Patterson <[email protected]>
Support multiple schemas.

b012689573fc464abead2663a50119fbc37e12c9 authored over 15 years ago by Chris Allan <[email protected]>
Ignore multiple xsd:schema definitions on the same SAX state machine acceptor.

4df0332cb200eff9d5083439b0bdbdb801e445da authored over 15 years ago by Chris Allan <[email protected]>
Changing Mask from using a Pixels object to having a binary blot of BITS. This is to remove a nasty recursion that showed up during code gen.

7cda57b4861d395702f0b3f8ba02117af5ecda4e authored over 15 years ago by Andrew J Patterson <[email protected]>
Sorting of properties by name.

06544db94e379634542eb311eb23c268cefa75d8 authored over 15 years ago by Chris Allan <[email protected]>
Working version of MetadataStore template for ome.xsd.

c21923b6459ea8e84e81a54ac6f88af5f525065a authored over 15 years ago by Chris Allan <[email protected]>
Handle indexes and reference types correctly.

1d3729bea4ddfaff85b9ed044c0fd9decbff5539 authored over 15 years ago by Chris Allan <[email protected]>
Initial version of MetadataStore codegen.

565de6731d0fb48774ee613a084ebf845a457de2 authored over 15 years ago by Chris Allan <[email protected]>
Adding configobj into the repository.

ee576289333bb98c10dcef48e302cbee236c7617 authored over 15 years ago by Chris Allan <[email protected]>
MetadataStore changes:

* Populate ROIs in Image, not DisplayOptions.
* Remove some unused DisplayOptions-related met...

ffcc2280a0d6db0d990c7a690c710ed972bee037 authored over 15 years ago by Curtis Rueden <[email protected]>
Rename to StructuredAnnotations to match SA file.

f8a8af90c1632b208cb2c3785c53f3b5390ef3f7 authored over 15 years ago by Andrew J Patterson <[email protected]>
New ROI code and added namespaces and XmlAnnotation template for 2009-09

7921156ccb5085da7bc28c06e8d196a2b78bf980 authored over 15 years ago by Andrew J Patterson <[email protected]>
Renaming StructuredAnnotation back to StructuredAnnotations (with an s) - not sure why this occured.

bec140e81138f52e16ee84b829320331078e61ff authored over 15 years ago by Andrew J Patterson <[email protected]>
Updated to add a validation test for the input file and the output file.

254fbff399b0dfe023283085d4a1ed7fddb5ca35 authored over 15 years ago by Andrew J Patterson <[email protected]>
Stylesheet to re-order a 2008-09 file.

d138c325fc3d806b843474a0f9503f598bb8901a authored over 15 years ago by Andrew J Patterson <[email protected]>
Added conversion 2007-06 to 2008-09 and further ROI update tweeks. ROI has problems with incorrect source data.

4bc59792b26757fd57c4a130e824fa954bf05850 authored over 15 years ago by Andrew J Patterson <[email protected]>
Adding 2008-02 to 2009-09

5f5787d5f35949e4a20c91ca20c69393e4148546 authored over 15 years ago by Andrew J Patterson <[email protected]>
Updates to allow file to process 2003-FC to 2008-09 to 2009-09

ded31856f78c8bda423a4ea61c0dc975db41f7d8 authored over 15 years ago by Andrew J Patterson <[email protected]>
Updating 2008-02 sample.

447477bd99d6069be7bd12eec31d6242f6d7b8eb authored over 15 years ago by Andrew J Patterson <[email protected]>
Support for selecting the XSD namespace and performing a generateDS state reset (should fix problems where we're providing incorrect diffs).

6dba75465626da07e71d877654fa4a36e0a550cb authored over 15 years ago by Chris Allan <[email protected]>
Fix for BinData inside OTF.

5444ad041ad6f31f1cdb5abe605397b2e5bd799e authored over 15 years ago by Andrew J Patterson <[email protected]>
Xslt 2003-FC to 2008-09 to 2009-09 almost working.

9525acfd82bb79c59761b97b70822dc2694c6088 authored over 15 years ago by Andrew J Patterson <[email protected]>
Minor fix to Bin:BinData for OTF

53a1389c97f7b28e78c44a3f3cb46da936a1707e authored over 15 years ago by Andrew J Patterson <[email protected]>
Two scary recurisive functions later we have ROI converting - now with improved sample.

d445425983e532a0c680b83ae8b0c9d0406a8e31 authored over 15 years ago by Andrew J Patterson <[email protected]>
Two scary recurisive functions later we have ROI converting.

0bb3c816bc8b8ea9397bf7d74f5c54fd94a0b671 authored over 15 years ago by Andrew J Patterson <[email protected]>
Now working Pixels and Region

0fd6fe41411874ee907e6485b3dc6a4856cc48cd authored over 15 years ago by Andrew J Patterson <[email protected]>
Now have correct FilterSetRef.

e1dcad9f367288bdd66db6c54ddf63801217332b authored over 15 years ago by Andrew J Patterson <[email protected]>
Now have correct seperation of FilterSet, Filter and Dichroic.

3b7a15a9ceb2a5d99eff4abb458f415c8c5aafc5 authored over 15 years ago by Andrew J Patterson <[email protected]>
Minor fixes for 2003-FC to 2008-09.

c0763ea079f9d3ddbfefb425a5aec7d599910b8a authored over 15 years ago by Andrew J Patterson <[email protected]>
Good chunk of the stuff outside of Image node fixed for 2003-FC to 2008-09.

9f9cd33abf26b53d48f07b70bd6906077a2d9f43 authored over 15 years ago by Andrew J Patterson <[email protected]>
More conversion from 2003-FC to 2008-09

842275f4780fe47f123a8db4ad60e732f681a985 authored over 15 years ago by Andrew J Patterson <[email protected]>
Changes to xslt-test for 2003-FC to 2008-09

8b02c95b0e099b22cd033238b3b5f8c493b9084f authored over 15 years ago by Andrew J Patterson <[email protected]>
Changes for XSLT update for 2003-FC to 2008-09

f736c75f2119f3fcaab1c0d9562c6e8e1b248a85 authored over 15 years ago by Andrew J Patterson <[email protected]>
Changes for enum update for 2003-FC to 2008-09

81141584517b77c20c571a7790d22f7786152476 authored over 15 years ago by Andrew J Patterson <[email protected]>
Rename file and improve code

5af05ed6d90c2ca70ce1121d2940902f0ffe38ec authored over 15 years ago by Jean-Marie Burel <[email protected]>
rename file

80c953c359caff6df63cba419cbf1127b3f24f73 authored over 15 years ago by Jean-Marie Burel <[email protected]>
renamed file to indicate which schema it works against.

255a95ecdd92f75655bb50fe8bde4e9d0c1be172 authored over 15 years ago by Donald MacDonald <[email protected]>
moved methods from xslt-fun to new class

a10193706824712a4bafdbe9868793bcbe82395e authored over 15 years ago by Donald MacDonald <[email protected]>
removed LensNA control

bf4dd0725b97d73234f970fc6fd8fca4836c5511 authored over 15 years ago by Jean-Marie Burel <[email protected]>
Removed invalid ROI IDs

3b3b5982515d5aef6330def32a97e54f8003eb48 authored over 15 years ago by Andrew J Patterson <[email protected]>
Removed invalid ROI IDs

171e44a5b39e6f1e360a2fa90e54413caab6ebfd authored over 15 years ago by Andrew J Patterson <[email protected]>
Fixed Namespace of AnalysisModule

7d604eb3fffac1aee9ea1fc96ba1c32f2e7497b1 authored over 15 years ago by Andrew J Patterson <[email protected]>
Fixed key constraints for secondary Em and EX filter and OTFID

1d3995d8e586850abe29faf51320843cd8e7c284 authored over 15 years ago by Andrew J Patterson <[email protected]>
remove roi element in microbeamManipulation

85a43f2e16dc816a4f7cde5f632d7a357399588a authored over 15 years ago by Jean-Marie Burel <[email protected]>
ROI ns fixed

d2d6fef7142e4ce8270d9f461c3bdd6806269899 authored over 15 years ago by Jean-Marie Burel <[email protected]>
Fixed Union name space

eae0d57cf8c41b3bae5ea189b9f8060dbf7bbe41 authored over 15 years ago by Jean-Marie Burel <[email protected]>
Fixed ROI name space

7c160eae83d305477e9814f6a37c3bdb78e48ba9 authored over 15 years ago by Jean-Marie Burel <[email protected]>
Fixed the ordering problem while transforming pixels elements.

fc764dbe9c1a2a79dc4d34f27f940355a3f41f7e authored over 15 years ago by Jean-Marie Burel <[email protected]>
Cleaned up some whitespace

6c47ec87e68c2af17922922e31f8f36b96044929 authored over 15 years ago by Chris Allan <[email protected]>
Fixed MicrobeamManipulation/LightSourceRef

Fixed ROI, Plate, Reagent ns

99e2c7cb2d16335d94b65898eddf4bbc2b924a13 authored over 15 years ago by Jean-Marie Burel <[email protected]>
changes for Microbeam, which is still not complete.

e582a3442ccd82b462b668685b594abeafe947da authored over 15 years ago by Donald MacDonald <[email protected]>
Added transformation of enumerations values.

b0d065b265cc7cdb8084009e29b8ae327f6dc704 authored over 15 years ago by Jean-Marie Burel <[email protected]>
add doc

576e212d819ee7b5247ac9fb86cc6b4f60fa09f2 authored over 15 years ago by Jean-Marie Burel <[email protected]>
Added control to validate values of attributes

126043c762e7604c36f4eba51e4e0c1fea03fabd authored over 15 years ago by Jean-Marie Burel <[email protected]>
added controls for shape values

b27ee9cefecf072edafa7a722741fc1b93dd7d5d authored over 15 years ago by Jean-Marie Burel <[email protected]>
Added control for LensNA and Transmittance.

4910bd90ac5fd4c3b97b048cd4d828e80bd678f3 authored over 15 years ago by Jean-Marie Burel <[email protected]>
Fixed

Description in Plate should be in SPW not OME
Description in Reagent should be in SPW not OME
Nee...

a5a46630c6d900005e383b4368c15225d0c64a43 authored over 15 years ago by Jean-Marie Burel <[email protected]>
Adding sample files for other versions of schema.

efe5e68dbc7fe1c9cb4807df0001b87f03bd417c authored over 15 years ago by Andrew J Patterson <[email protected]>
added methods for populating refs with actual objects

30e9afbf6dd5b4831117e9d2d72ceb05921ce606 authored over 15 years ago by Donald MacDonald <[email protected]>
Fixed up enum-tool a little bit and added support for diffing enumerations in XSD files.

806c8f39a4d3663d4986de929840eecfba870199 authored over 15 years ago by Chris Allan <[email protected]>
Added transformation for ROI elements.

Removed Channels

2f20284d3595ec7b9eb82ea1cf14e0c0ae0f6689 authored over 15 years ago by Jean-Marie Burel <[email protected]>
Simplify the shape object by removing Channels which was not adding anything. Shape now contains ChannelRef directly.

ba9cb54677e8994bd17c2cdb5d3274478628c055 authored over 15 years ago by Andrew J Patterson <[email protected]>
Updated sample to have a full range of ROI objects.

fb6428b05c4063b7b9ca8fa60cd95714f8982c79 authored over 15 years ago by Andrew J Patterson <[email protected]>
Fixed parents that are explicit definitions.

64ddbb44c48b689f118adfc88062569679b6a7dd authored over 15 years ago by Chris Allan <[email protected]>
Transform most of the nodes.

Still few things to do.

c0fc8e257b407166ec39fcd61ad4cc2ec9f972b4 authored over 15 years ago by Jean-Marie Burel <[email protected]>
Added test

02144b019b645e234a720b4f647edc4c748631e9 authored over 15 years ago by Jean-Marie Burel <[email protected]>
Undo change in order of elements inside Image

72c22be65680251cd553af911e11acc9afb0ed9c authored over 15 years ago by Andrew J Patterson <[email protected]>
Removed PlaneTiming and StagePosition and moved values up to Plane.

6331edf2825770544908d32a2f46b2c523842692 authored over 15 years ago by Andrew J Patterson <[email protected]>
Update sample file to have an extra Detector of type EM-CCD

22e12208997124605e94523f151eb8bba69fab79 authored over 15 years ago by Andrew J Patterson <[email protected]>
Update sample file to use less confusing Namespace in the Annotations

4d03762f7aca9eedca03dab0c14519ee9260a295 authored over 15 years ago by Andrew J Patterson <[email protected]>
Fixed Description and plane problems

da0becc33a0ba9105749eb7e1dba33f32e4e2d0b authored over 15 years ago by Jean-Marie Burel <[email protected]>
Largely working enum-tool, needs some validation but it's largely functioning across all enumerations now.

266f18d648081b83605fc7d4170af09eee30883e authored over 15 years ago by Chris Allan <[email protected]>
Moved parent resolution outside fu.py and fixed enumeration value propagation.

b8edc8e06c23123f9d79f992de7ab12a338c9b98 authored over 15 years ago by Chris Allan <[email protected]>
added new tester methods

27630f6c5feb217dd97e08be29cd2e18acd11cae authored over 15 years ago by Donald MacDonald <[email protected]>
Updating generateDS to properly handle unions and cascading simpleType, union, simpleType constructs.

5077ebe162e3be339e142c9c1d93c504693fe418 authored over 15 years ago by Chris Allan <[email protected]>
Fixed problem with pixels transformation

811f0605f05a05b53e37dc066079dd92c0293182 authored over 15 years ago by Jean-Marie Burel <[email protected]>
transform remaining elements

12407a6f60756aa34dd45515393eb224eb71ccb4 authored over 15 years ago by Jean-Marie Burel <[email protected]>
Rename NumPlanes to PlaneCount

dda35df02dca6df801fcc55ff040486f79612a04 authored over 15 years ago by Andrew J Patterson <[email protected]>
Updated the sample file to have more sensible IDs

b425107e7385842607291da0297df0ea293f2966 authored over 15 years ago by Andrew J Patterson <[email protected]>
Adding working files for merge and XSLT sample

36251958eadea652acc8eda2f1ac9e4fd1f84b39 authored over 15 years ago by Andrew J Patterson <[email protected]>

9ca9705ae03cc630554b4477e45d04aee9042f2e authored over 15 years ago by Andrew J Patterson <[email protected]>
Image node translation

Remove AcquiredPixels and DefaultPixels attributes.
Remove elements Thumbnail, DisplayOptions, Re...

82a745c5a872d6a6b03d3f286c186dc1c3e3966e authored over 15 years ago by Jean-Marie Burel <[email protected]>
Added local patches to support our usage of generateDS and the 1.18c patch to fix enumerations.

53fe0ff9d8f58472c892c43b8690cd32803f2aa3 authored over 15 years ago by Chris Allan <[email protected]>
Upgraded to generateDS 1.18c

e1c0c00925d34812e68e608c74bd74ee506007df authored over 15 years ago by Chris Allan <[email protected]>
Removing old generateDS version.

665a1640c80fe551574ed058a78883f4ee1099aa authored over 15 years ago by Chris Allan <[email protected]>
Cleaned up Immersion only enum-tool debugging.

5cb7ac8c327c5ba4ba5d24510e96c6f3c92e1502 authored over 15 years ago by Chris Allan <[email protected]>
Replace in Experiment MicrobeamManipulationRef by the corresponding MicrobeamManipulation node from Image

45317f46fb3ce059b4b9c3f1261fea478efa5edc authored over 15 years ago by Jean-Marie Burel <[email protected]>
Initial commit of enum-tool; needs generateDS update and bug fixes to be complete.

f7dfca6f480dea7bcef9a6d2f82aea89291574e1 authored over 15 years ago by Chris Allan <[email protected]>
XSLT fun, Day 2. (Donald, Andrew, Jean-Marie and Chris)

fe3e03c34e4619f2e2a210d5a0b817176c556c43 authored over 15 years ago by Chris Allan <[email protected]>
XSLT fun, Day 1. (Donald, Andrew, Jean-Marie and Chris)

fd0e06f014e94daa107812f6043ac9693f1a21fd authored over 15 years ago by Chris Allan <[email protected]>
Re-order keys for tidyness

e6c4bca3225ea3b5f896b4822c438361e85bc843 authored over 15 years ago by Andrew J Patterson <[email protected]>
Added most of the Key / KeyRef constraints. Not complete for ROI or it's children.

832c4c18edf56d9e5c9264cfc7bf509bef80e371 authored over 15 years ago by Andrew J Patterson <[email protected]>
Add get/setGroupID methods to metadata API, and regenerate.

9e937561d67a6592717f7fd87815db804a2da792 authored over 15 years ago by Curtis Rueden <[email protected]>
Removing RegionID and associated structures.

710380d0432bf3f3edc58012730362e25791c3c4 authored over 15 years ago by Andrew J Patterson <[email protected]>
Minor edits to work with Will's stylesheet.

cc358f22094844d84182259eccc5dd34d889bae2 authored over 15 years ago by Andrew J Patterson <[email protected]>
Change schema namespace to 2009-09 and change FilterSet to use Ref Elements. Also some doc changes.

263752741e5ace27123004d7668be0f0f839474d authored over 15 years ago by Andrew J Patterson <[email protected]>
Fixing Docs

c13e8bb5271d27b2f01a0bb9bb179691c77a57a8 authored over 15 years ago by Andrew J Patterson <[email protected]>
Fixing Docs

3aa8905ae7f95a3ce57d81c6c022c4681a9c42a8 authored over 15 years ago by Andrew J Patterson <[email protected]>