github.com/ome/ome-model commits | Ecosyste.ms: OpenCollective

xsd-fu: Tidy templates into single templates directory

bad65c88db08d2fc752139f34f8613184933b04d authored almost 5 years ago by Roger Leigh <[email protected]>

xsd-fu: Remove unused and long broken xslt python tests

These have nothing to do with the code generator.

4ed77d35ffce224abc6c3eb4228d011603e8d4b2 authored almost 5 years ago by Roger Leigh <[email protected]>

xsd-fu: Remove unused parts of generateDS not required by xsd-fu

8117263b2a4a7afc2d87e902f30ae5f4b94a1ed3 authored almost 5 years ago by Roger Leigh <[email protected]>

xsd-fu: Run 2to3 over xslt scripts

c4c0612dbaf7208815b11fd15ad73d1cdb737f76 authored almost 5 years ago by Roger Leigh <[email protected]>

xsd-fu: Remove unused xsd-fu.bat

1c8cf259e852d9f38f85714ab2df3fb9f102c97d authored almost 5 years ago by Roger Leigh <[email protected]>

xsd-fu: Remove unused and buggy setuptools configuration

dfc012dc9eaa89e8aac48f3a218348f268474829 authored almost 5 years ago by Roger Leigh <[email protected]>

xsd-fu: Clean up imports and conditional Python 2 logic

4a53a88e5189107ff9610230927eda594546b6e4 authored almost 5 years ago by Roger Leigh <[email protected]>

xsd-fu: Remove compatibility ImportError fallbacks

9faec71c915397b2dc080ea6c84f8de563dd9d92 authored almost 5 years ago by Roger Leigh <[email protected]>

xsd-fu: Run 2to3 over generateDS

ddc24a413cb31aa005e876a59ba144fac8bf1afb authored almost 5 years ago by Roger Leigh <[email protected]>

xsd-fu: Run 2to3 over util.py

62bb8f828f408aca5dd698d6b26a9f2346166fd2 authored almost 5 years ago by Roger Leigh <[email protected]>

xsd-fu: Run 2to3 over genshi

6866ba1cd6199a3e27253e3b131ffc51b291de94 authored almost 5 years ago by Roger Leigh <[email protected]>

Bump to 6.1 development segment

754f72d5573b5b9e8ead9d11b42f441ed601e0a3 authored about 5 years ago by Sebastien Besson <[email protected]>

Merge pull request #65 from rleigh-codelibre/python-modernise

Add support for building with Python 3 as well as Python 2

7b4d81fbb0201f67c415a7d9a964af724c9914b6 authored about 5 years ago by Sébastien Besson <[email protected]>

Only run Travis CI on OpenJDK LTS

567a0e537481323afac24febfd52754249273e81 authored over 5 years ago by Sébastien Besson <[email protected]>

Bump release version to 6.0.2-SNAPSHOT

45e526914d65ab4024bc316e8b78105ea38f64aa authored over 5 years ago by Sebastien Besson <[email protected]>

Bump release version to 6.0.1

4d5b2e68d178de967d53100a1726b447726282cd authored over 5 years ago by Sebastien Besson <[email protected]>

Merge pull request #101 from sbesson/dependency_fix

Fix cyclic dependency between specification and ome-xml

f73d3220f4c285005885fb46037d43f7ce33d278 authored over 5 years ago by Sébastien Besson <[email protected]>

Fix cyclic dependency between specification and ome-xml

The source generation of ome-xml depends on the XSD resources in the
specification component but...

911ef67e95db0b463a8eba3c894d732d8ef12901 authored over 5 years ago by Sebastien Besson <[email protected]>

Bump release versions to 6.0.1 development versions

6b6ad32e108c42d5b0b2d9203dcb4b71b38443e3 authored almost 6 years ago by Sebastien Besson <[email protected]>

Merge pull request #100 from sbesson/6.0.0_prep

6.0.0 preparation

bc6d4f4d63a845e9ab80f8aa6b2297c49395ac86 authored almost 6 years ago by Sébastien Besson <[email protected]>

Bump Python release number

ef1e9e6c91327f1628a1d2749ca608ac042abce5 authored almost 6 years ago by Sebastien Besson <[email protected]>

Bump Java/C++ version numbers

a6e4fba2fa6798f7f101d6df6c4240302edc0ebe authored almost 6 years ago by Sebastien Besson <[email protected]>

Fix release date

fa77886098d66fa526872c2a11dd08695174aa7b authored almost 6 years ago by Sebastien Besson <[email protected]>

Split NEWS.md by section

fb3e9c0deb637c85ed584d19079e461988c59f3b authored almost 6 years ago by Sebastien Besson <[email protected]>

Merge pull request #99 from sbesson/ometiff_samples

Update OME-TIFF sample page with sub-resolutions OME-TIFF examples

35bb2fe9f860389cf1e9465ae8436d17eac87a4e authored almost 6 years ago by Sébastien Besson <[email protected]>

Fix image dimensions

ae6861da638ce13d90161bed70de5864595a7c1b authored almost 6 years ago by Sebastien Besson <[email protected]>

Update OME-TIFF sample page with sub-resolutions OME-TIFF examples

This lists the official OME-TIFF examples that were generated using Bio-FOrmats
6.0.0-rc1 and wi...

6ec05644d1fa2da1e75b2cfdddfaa2481fd77aa1 authored almost 6 years ago by Sebastien Besson <[email protected]>

Bump release version to 6.0.0-SNAPSHOT

955c5ca1a5cf2ae10d3a5ac2b4554ec10b5275cd authored almost 6 years ago by Sebastien Besson <[email protected]>

Add history for 6.0.0-m2

48ebf5dc092615703aaa870dc5e44658958a8048 authored almost 6 years ago by Sebastien Besson <[email protected]>

Bump release version to 6.0.0-m2

cf0a8c13b5dbd0320660ef394f1d94c134e39db2 authored almost 6 years ago by Sebastien Besson <[email protected]>

Merge pull request #98 from sbesson/ometiff_pyramid

Pyramidal OME-TIFF specification addition

9cf2dc813cb5354715a9064db400b00099cfe9d6 authored almost 6 years ago by Sébastien Besson <[email protected]>

Explicitly specify SubIFDs should not be referenced in the OME-XML

89957bd7b3369f404d12937599bd6a142eb1a874 authored almost 6 years ago by Sebastien Besson <[email protected]>

Improve sub-resolution IFD wording

4a0f28d3b998f5db7e51910458420ae975b51ce0 authored almost 6 years ago by Sebastien Besson <[email protected]>

Specify TIFF tag names

3a98e10828e2c85d48b80e44c4d74006b48ced23 authored almost 6 years ago by Sebastien Besson <[email protected]>

Add various feedback on the sub-resolutions

97e3a912d3de006ece1010380b8886ac7b827c90 authored almost 6 years ago by Sebastien Besson <[email protected]>

Fix typos

cfcc45a5bce699481fee21586bdce4ee21cab561 authored almost 6 years ago by Sebastien Besson <[email protected]>

Rework subIFD paragraph

7b98b7645fe395a2e2b5cf32f2b9c43ede8a8bf8 authored almost 6 years ago by Sebastien Besson <[email protected]>

Add reference to RFC 2119

d653cbc8a1de0d49c8be4695cf29ab8a92cfc7c2 authored almost 6 years ago by Sebastien Besson <[email protected]>

Amendments and links to the Adobe TIFF specification

54bcc7020a745b6ee401c8c8be3067d8f282b89a authored almost 6 years ago by Sebastien Besson <[email protected]>

Add first version of pyramidal extension of OME-TIFF specification

Including
- definition of pyramids, subresolution
- supported dimensions for multi-resolution im...

32a088d0331f5aebaf6bf18b477fe1071584fc89 authored almost 6 years ago by Sebastien Besson <[email protected]>

Move to the next development segment

f8c375963f7b67353a229cf3e223b92d2a29a70b authored almost 6 years ago by Sebastien Besson <[email protected]>

Bump release version to 6.0.0-m1

8e91d33735492994f19ad13c1962e6e1e979403e authored almost 6 years ago by Sebastien Besson <[email protected]>

Update NEWS.md to cover changes in 6.0.0-m1

a45f3500a5906a1e2a0c97791f6827d9bbb1c847 authored almost 6 years ago by Sebastien Besson <[email protected]>

Merge pull request #88 from melissalinkert/converter-channel-refactor

MetadataConverter: refactor Channel copying into separate public methods

9d43968715c521de5b4738026b12cc820acd0d74 authored almost 6 years ago by Sébastien Besson <[email protected]>

Change method names from convertChannelMetadata to convertChannels

abf622ecb168440426d066e254fa12cdbe8f3183 authored almost 6 years ago by Melissa Linkert <[email protected]>

Merge pull request #97 from sbesson/multitiff

ome_model: add support for generating companion with multi-page TIFFs

21b25923db0a6d05bc132ae6eb2029b0cef90bcf authored almost 6 years ago by Sébastien Besson <[email protected]>

Restore backwards-compatible Image constructor signature

536a3ddf00164ad5663f91f10c96b66bc0858052 authored almost 6 years ago by Sebastien Besson <[email protected]>

Flake8 fixes

6c4ce542eef85cf8ffd7062df862aa648d2d2b5e authored about 6 years ago by Sebastien Besson <[email protected]>

ALlow to write to a file

79e438ecce89a23f03199232863342f8fbc09b5a authored about 6 years ago by Sebastien Besson <[email protected]>

Image.add_tiff() takes now a TIFF at a time

Optional TiffData elements are passed as optional arguments

4ea8bf684cc388cdd1b07a20f83189c371616fee authored about 6 years ago by Sebastien Besson <[email protected]>

Separate TIFF handling in Image creation (similar to channel handling)

f9d144c3a0eef5ea210b5f934e0a8c7420fd8ac8 authored about 6 years ago by Sebastien Besson <[email protected]>

Merge pull request #95 from sbesson/openjdk

Extend Travis configuration to test OpenJDK8 and OpenJDK 11

756225ebd8ab83839e870866ff9410b3198f20fa authored about 6 years ago by Sébastien Besson <[email protected]>

Merge pull request #96 from joshmoore/minor-py-fixes

Minor py fixes

4820fa307a605631d921573c388fb79aa536e15d authored about 6 years ago by Sébastien Besson <[email protected]>

Support Python 3

499731d38439de85b7cdf4c85037f28e3bc4a4c7 authored about 6 years ago by jmoore <[email protected]>

Fix whitespace

1147ce962df2237245bb6dcf4b399ae46635ae29 authored about 6 years ago by jmoore <[email protected]>

Add header metadata

4d00d31b9a557b839dada1b6fd166031afe0a103 authored about 6 years ago by jmoore <[email protected]>

Allow choosing output stream

17478222a37479088781df3c8d8d6d12530dcbed authored about 6 years ago by jmoore <[email protected]>

Merge pull request #92 from sbesson/py-experimental_plate

Expand experimental model library to generate SPW samples

054228d511995469f00305cdc358e3b827a375f9 authored about 6 years ago by Josh Moore <[email protected]>

Extend Travis configuration to test OpenJDK8 and OpenJDK 11

ee38b85cbf9e805906c387ff259daedb7b246f07 authored about 6 years ago by Sebastien Besson <[email protected]>

Merge pull request #94 from mtbc/imagic-broken-TLS

Have link checker ignore documentation links to Imagic.

d06818437e1721eafa60ecdfa6bbf1130f70f5d6 authored about 6 years ago by Sébastien Besson <[email protected]>

Have link checker ignore documentation links to Imagic.

Their http redirects to https and their nginx configuration
offers a certificate whose chain omi...

71ba281e2ab6456939f5f0d22294f3bbadd89b85 authored about 6 years ago by Mark Carroll <[email protected]>

Support plates or individual images

32cc42d0143053247432729cfbb30ac6fbf5c464 authored about 6 years ago by Sebastien Besson <[email protected]>

Expand experimental model library to cover SPW

e2e387217442067e80e34d9d0565a193a1cd921d authored about 6 years ago by Sebastien Besson <[email protected]>

Merge pull request #91 from joshmoore/py-experimental

Add experimental OME-XML generation

33d05af8babd059900d89ab1cf5ba774ee5f4f85 authored about 6 years ago by Sébastien Besson <[email protected]>

Merge pull request #90 from joshmoore/base64

Remove DatatypeConverter usage for JDK 11+

c58fca20ff6da83a5fb8a5cfcc7af4ce9e4b5dd5 authored about 6 years ago by Sébastien Besson <[email protected]>

Add experimental OME-XML generation

Combining:

* https://github.com/IDR/idr0047-neuert-yeastmRNA/pull/1
* https://github.com/spac...

40543bd0b73ce2f9e0f9cac17e3528f8a1426abe authored about 6 years ago by jmoore <[email protected]>

Drop jdk7

5dbe739e8903a0016705f0a89232c0818f9dc675 authored about 6 years ago by jmoore <[email protected]>

Remove DatatypeConverter usage for JDK 11+

4f8a8c3cd571f53e24c51b04161b007153396a2c authored about 6 years ago by jmoore <[email protected]>

Switch Travis to Oracle JDK 11

See https://travis-ci.community/t/help-with-oraclejdk10-build-on-linux/398

86ddce99b7a8994c77870ac27abddf1bafa265fb authored about 6 years ago by Sébastien Besson <[email protected]>

genshi: Handle StopIteration

25a08480fd4de5bea143cb787fcb125a0db52f4a authored about 6 years ago by Roger Leigh <[email protected]>

MetadataConverter: refactor Channel copying into separate public methods

86f63abdacc4b2158ef0faa741cf95cf19232a16 authored about 6 years ago by Melissa Linkert <[email protected]>

Merge pull request #85 from rleigh-codelibre/javadoc-fixes-gh

ome-xml: Javadoc fixes

5eb667b10449e7fe994ccd030247843516477aed authored about 6 years ago by Sébastien Besson <[email protected]>

ome-xml: Javadoc fixes

505233a567ba686893c0f869383c6c74c10e9fb8 authored over 6 years ago by Roger Leigh <[email protected]>

Merge pull request #83 from sbesson/definiens

Exclude definiens.com from the linkcheck

9894213f784ed56b4522ab36db87805d0fca46a0 authored over 6 years ago by Sébastien Besson <[email protected]>

travis: Test with Python 2 and Python 3

fcba1f1d7b4d7a8c9030e5a8a6508eb6a19d81bb authored over 6 years ago by Roger Leigh <[email protected]>

requirements: Pin Sphinx to 1.7.9 for Travis

3d33ce5ae8e6c34f4c9a5746c08f97245a6ffa95 authored over 6 years ago by Roger Leigh <[email protected]>

maven: Set PYTHONPATH to include genshi and other embedded modules

1058026e8466d4a560ded9f2eae625fed4865d0d authored over 6 years ago by Roger Leigh <[email protected]>

cmake: Set PYTHONPATH when running xsd-fu

9eab712389ca16893c0fb9b95637f2485d840317 authored over 6 years ago by Roger Leigh <[email protected]>

cmake: Upgrade manpage scripts to python3

f0f801cea59eebf80ff4131c8226d6a2ad861f9d authored over 6 years ago by Roger Leigh <[email protected]>

xsd-fu: Switch from configobj enum handlers to direct configuration

The configobj logic didn't convert well from Python 2 to 3. However,
it's largely unnecessary, ...

f17aa66484e6bce8e4e7f93707a17068a332e15d authored over 6 years ago by Roger Leigh <[email protected]>

maven: Allow selection of python version

69d0eacf27b5e0448f16c1b896a1c65a6661d11f authored over 6 years ago by Roger Leigh <[email protected]>

xsd-fu: Make variable diagnostic strings debug output

3397b6af1e91eef72dc1a859b63fc6db5e1ec61c authored over 6 years ago by Roger Leigh <[email protected]>

requirements: Add six

5034450121e4141e580c140acd1d575a74357899 authored over 6 years ago by Roger Leigh <[email protected]>

requirements: Drop genshi so local copy is always used

a14a8079f0de47710c111ca81fbfe0f44113ebf2 authored over 6 years ago by Roger Leigh <[email protected]>

xsd-fu: Convert custom content to strings

72f0dff7cbd37f5756a8adc03b3a1345e2b84484 authored over 6 years ago by Roger Leigh <[email protected]>

xsd-fu: Java OMEXMLMetadata template: Use list indexes for dict keys

71edca54765092b7f72b998385d5874c9ae0a0f5 authored over 6 years ago by Roger Leigh <[email protected]>

xsd-fu: property.py: Replace use of cmp

3c3e5031e6ac016009a1e1de33fc0353adad1892 authored over 6 years ago by Roger Leigh <[email protected]>

xsd-fu: Run python-modernize to allow python 3 interoperability

787bf949c3fb471ed192b8301a8afd6111138c32 authored over 6 years ago by Roger Leigh <[email protected]>

xsd-fu: genshi: Apply Python 3 fixes from SVN

dce9ae31505685f5d411ad47a2e52df27ea8725b authored over 6 years ago by Roger Leigh <[email protected]>

xsd-fu: Replace odict with OrderedDict from collections

For C++, use OrderedDict to preserve the order of const and non-const
references.

03f3884da3f8a4d5dee479bb81e9cce1bacd8490 authored over 6 years ago by Roger Leigh <[email protected]>

xsd-fu: all templates: Correct sorting of dict keys

e74ecbad5d662f724061978f977ffd99a418969d authored over 6 years ago by Roger Leigh <[email protected]>

xsd-fu: all templates: Use lists rather than iterators

b946adcef5f36231bb71e926535b1245aef9a200 authored over 6 years ago by Roger Leigh <[email protected]>

xsd-fu: Run python-modernise over generateDS

3f9b5599c6e4b669cef20c540066d5c41c1bcf9f authored over 6 years ago by Roger Leigh <[email protected]>

cmake: Make python interpreter configurable

f43c2e35ebaa62de6b69ea4c1ec4d731e1a9276b authored over 6 years ago by Roger Leigh <[email protected]>

xsd-fu: Run python-modernise over genshi

14f6d89595f75d483859019c74a724923d5fdb36 authored over 6 years ago by Roger Leigh <[email protected]>

xsd-fu: generateDS: Preserve element and attribute ordering

bdc086e3f760cec36f4ada7dd3a29996b85dad6d authored over 6 years ago by Roger Leigh <[email protected]>

xsd-fu: generateDS: Correct StringIO import

4ee271ab8d0f780ceab3d69611bbb95fc9593c36 authored over 6 years ago by Roger Leigh <[email protected]>

ci: appveyor: Use TLS1.2 with Java 7

f61bbaee2c9101bdfd234b258bacfb02e542bdf0 authored over 6 years ago by Roger Leigh <[email protected]>

xsd-fu: Use stable metadata store method ordering

3eae87e66fc20f7efc92ea17e883db93702a9563 authored over 6 years ago by Roger Leigh <[email protected]>

Merge pull request #84 from rleigh-codelibre/filter-resources

maven: Correct filtering of model version

31ed96cf65e8fe59d58110a4aa1fba3e7568b2c9 authored over 6 years ago by Sébastien Besson <[email protected]>