Ecosyste.ms: OpenCollective

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github.com/ome/ome-model

OME model (specification, code generator, implementation)
https://github.com/ome/ome-model

Adding SPIM

0964dad3a9f537b52b08a35948388135a4f33fc9 authored over 14 years ago
Re-run of code generation; working copy schema. Huge merge. (See ome-xml:r635)

58f91e24f105286ed10f478c0f8a5d4d5aa65049 authored over 14 years ago
Added three new templates for aggregate, dummy and filter metadata store/retrieve implementations. Fixed some bugs as they applied to light source usage and added some enumeration handler regular expressions.

33ca668f1e2bc211408916409f5987902b983f32 authored over 14 years ago
Full transform to 2010-06 - first version

ce8de2d88d451c3e128ed8786f5c105c5ffc09ad authored over 14 years ago
Full transform to 2010-06 - first version

1a64dab7d7e340645333b901ebb22a2ed624291e authored over 14 years ago
Removing redundant OME: prefixes

971ac2d3fdfd2b99f9a78bd0b95315752770795a authored over 14 years ago
Framework in place for transform to 2010-06

86e1d34357836d34b7ce6ffa997145309a5c13e3 authored over 14 years ago
Fixed scan-deps.pl warnings.

2606a0d6c22f568277061e04d3b2ad7e4e3c111f authored over 14 years ago
Upgrading integer values to more restrictive types.

190ca699d102d67fa352fc65195714771de71caa authored over 14 years ago
Adding three new integer types prior to moving away from the general use of the unbounded xsd:integer type.

90738eae239252f9579763d452a71efe44fb0a6f authored over 14 years ago
Fixed compile errors introduced in r6458.

f17d14496bc2e8dce6966d516a11eb945346bf52 authored over 14 years ago
Synced up export/MetadataConverter fixes between trunk and 4.2. OME-TIFF export and re-import should be working again.

c3d425436c95756ca0f333a4b511385212680add authored over 14 years ago
Moved ome.xml.r201004.* to ome.xml.model.* in trunk.

66198af014fa67e9e7d606f6c074e909e43c97b5 authored over 14 years ago
All tests now passing

ba587dd45b3d4d7fd52c75b342868272a9c0ce6a authored over 14 years ago
Change the default value for Color to -2147483648 as signed 32 bit int

bfdb4def14e26c3ccbd4a313fa12ea13ef652e79 authored over 14 years ago
Fix for the ROI conversion

fe7fd61755e9410b62ba9a4fa7a83e940fed37fa authored over 14 years ago
Preparation for "ome.xml.r201004" --> "ome.xml.model" package switch.

7c0d271ae8081962a270cb5324b9230d278600dc authored over 14 years ago
Add support for BinData counting.

6daf5c6d231bc44b7114236f11cbf65082d0011f authored over 14 years ago
Re-adding test files, updating links to those files in the tests

def9f64bb3e7eff3a634d90de6f5f8fdc1e5e7e0 authored over 14 years ago
Re-adding test files, updating links to those files in the tests

6b1698f8287e609cd4c77f8665f52fd055358bbc authored over 14 years ago
Re-adding test files, updating links to those files in the tests

a79b7c0d9b7b3c4d9c1ffe47276368be47ca24c5 authored over 14 years ago

7020c8922891795a3af0e1f7ec320e65e34deb61 authored over 14 years ago
Fixing AnnotationRef in LinkAnnotation

92c1d0bf9966a82773a2057b5172b529405272ba authored over 14 years ago
Updates to support custom content for setter in an OME-XML metadata implementation.

2a073c2fec5a5dd900c7f3f3adfe278042dc61f1 authored over 14 years ago
Added missing "continue". (See omero:#2467 and r6424)

6303268549e19079a4d37809e006537935b9bf9b authored over 14 years ago
Fixing missing UUID element for TiffData

ba8af31456ffa1d08b3b64699bef4cb920aeb331 authored over 14 years ago
Change to allow the files to run with no warnings

49945938bb4c80f66bc61b121e9ea74d119a75ba authored over 14 years ago
Handle very nasty null reference sources and remove System.err logging in favour of slf4j.

696c64cd8cb242acc45851ed736c4c6c54d05db8 authored over 14 years ago
Handle duplicate explicit defines by name lookup. Added a name lookup hash map. Initial version of OmeroMetadata code generation.

9da3b9eb28aeac132867a4413a81db4cdda6deb5 authored over 14 years ago
Striping Annotation from the Shape object.

f9f4f91b1dff38ccdbedc6c48ad995da8a8b2c1e authored over 14 years ago
General cleanup for metadata classes. Moved and overhauled ome.xml test cases. Support for UUID value through re-run of code generation. (ome-xml:r613)

85eeebcad6478da0c2e9ce502e903347d5de1013 authored over 14 years ago
Cleaned up templates for metadata classes. Support for text data of complex nodes (UUID specifically).

41c968cbcb4784c8a8d98d283af137d499c119a9 authored over 14 years ago
slf4j usage. Re-run of code generation (ome-xml:r612)

8efaf4d84c9078834d09235968d65828a50c2fe9 authored over 14 years ago
Remove all instances of System.err.println logging in favour of slf4j.

95b3ed41d9ac1ec7eb32d2dd85b65fc3d67d5019 authored over 14 years ago
Adding RC1 of 2010-06 to Releases

f809e0fd8ad8f63278e23e851ef7557f3dc205ac authored over 14 years ago
Fixing typos.

52895557fc07bd7d720f14f7a4ec84c70c1c27d6 authored over 14 years ago
Fixing typo.

1c873da1420674739f910d1cc45c06a3b9ede57a authored over 14 years ago
Adding better description for WellOriginX and WellOriginY.

ef94295b2a85dc67f454d0dd2b5041dbd0292b0a authored over 14 years ago
Re-run of code generation. (ome-xml:r607)

308616d7e9b6a98f58d7d674849f6fa328c7d8b0 authored over 14 years ago
Handle nulls being passed in as values to an enumeration handler.

ef1bb2727b93a04c064e167040b1bf4ffe516b3d authored over 14 years ago
Updating the schema location to 2010-06

b1825d8c8b93138c35822cd17b9f2089de8ce8e9 authored over 14 years ago
Adding OME HSC Compliant sample proposal

ca37a71d42630eea35f1c54ede8f1b391273c743 authored over 14 years ago
Re-run of code generation. (ome-xml:r604)

1f4d2d903d5b81fad3f8f8282e33809e2a1977d8 authored over 14 years ago
Better custom enumeration mappings.

b15c7eb71edd542ff2ebe68a0874cecf565a157a authored over 14 years ago
Re-run of code generation; customizable enumeration mappings. (ome-xml:r603)

123d7af226a67f0659d02560801635e09423e5ec authored over 14 years ago
Customizable enumeration mapping support.

414abc192c7b796b6d3f724a3921e398a7b8d01e authored over 14 years ago
Re-run of code generation (ome-xml:r602)

143791c15edb4cb95a3a4346cce8a7c928a97b3b authored over 14 years ago
Fixed enumeration handler templates.

15a9ae6aaa4b67dc08df57d507b28a59d2bab38a authored over 14 years ago
Re-run of code generation. (ome-xml:r601)

60ed987529ca7a5354318c4c696dab84203914c7 authored over 14 years ago
Better enumeration handlers for enumerations with an "OTHER" option.

c82d21ccf28f5007a4b460a320c6192af31bddb4 authored over 14 years ago
Re-run of code generation for enumeration handlers. Moved enumeration handlers to ome-xml component and cleaned up legacy enumeration provider. (See ome-xml:r600)

6ac28d0ede8cb96313503b072b5853746596aa4e authored over 14 years ago
Updated enumeration handler code generation.

ca8e3dd99b1cf737bd403dad3104f0d18a43dc3a authored over 14 years ago
Removing useless tmp directory from Subversion

268ba4e3584b4bb6c532fb6c5a4822e7f7d31dc6 authored over 14 years ago
Adding unused OME Compliant proposals - these are only work in progress files

c5743c2d446493aaca8e98a8321516739de13b42 authored over 14 years ago
Adding OME Compliant sample

64bcd809c73203019b0548912ef204a7310e1a5c authored over 14 years ago
Adding Width and Height to ROI:MASK. Change Timepoint to xsd:dateTime

eb19de262cbcb46383badd749b80365f16d3f4c9 authored over 14 years ago
Making Namespace optional in Annotation.

73f95bcfecb726b9fde3b962f93cdaf822a447e8 authored over 14 years ago
Fixing documentaton of values using PercentageFraction and made the [units:none] text consistent. Also typo in docs for Transform matrix. Just docs changes so safe to apply.

0b6763e9461bbc61c9ca0f2289a0b66983269d8e authored over 14 years ago
Fixing documentaton of values using PercentageFraction and made the [units:none] text consistent.

fc3cd07aa0690ba13783ba500f9015af53370e6c authored over 14 years ago
Annotation changes: Adding real GO terms to Term sample.

c015a736c4f520dda8c946ff70646978afe80a5b authored over 14 years ago
Annotation changes: Adding Term and List annotation samples

d557da3bc22d413e72c357b9d62d82f92133e030 authored over 14 years ago
Annotation changes: Adding Tag annotation sample.

b9b934d91b617a9648caea9155458ee665b38629 authored over 14 years ago
Annotation changes: Adding Term and Tag annotation. Renaming String to Comment. Moving annotation refs to base Annotation from List so all annotations can now be cross linked.

499b2ba24fb279a69a909ac8810f51a9864343df authored over 14 years ago
Fixing typo in transform matrix documentation.

9d982abca746b1f439248cf04533a7a6570cf20b authored over 14 years ago
* Fixed timestamp parsing bugs in Andor/Fluoview TIFF reader. Closes #489.

* Some progress on OME-XML transformation.

f8f21f2e604c31ae66c47d6633b082112f36ec73 authored over 14 years ago
Updated to new MetadataStore/MetadataRetrieve APIs. This may temporarily cause some problems, in particular:

* Several classes in loci.formats.meta have been temporarily removed, and affected code has been...

978ce7d651e5cfedb23eda28481d2387d17d6533 authored over 14 years ago
Re-run of code generation (ome-xml:r585).

2c44b6bd6421fbc2222b72a79274200ceca22ce7 authored over 14 years ago
Added some manual methods for Melissa that apply to BinData.

515c4a9917bd1da11243745d4ac912c61e91ea8b authored over 14 years ago
Adding code for Metadata Store test cases in Instrument, Plate and ROI.

931b138c0e4269968fe9b606ae5f565280423046 authored over 14 years ago
Enabling check of abstract-proprietary type counts. (At the moment only relevant to light sources)

22b50ab1e4267d315eb2fecd8b5ddb68fe25ba4c authored over 14 years ago
Re-run of code generation (ome-xml:r584).

363eaec871e67217cbc4e99b9013fc6081e81766 authored over 14 years ago
Allow counting of abstract-proprietary types.

953a102b0f06a0b51791f1bf2fdbbb6f77ddc173 authored over 14 years ago
Updated test cases from Andrew and a couple more passing with some changes from me.

7c5699dea61c7111d97e88c77500a0a8676cdd05 authored over 14 years ago
IMetadata getter test cases.

5a76d839f128aaf59a1451e5dff668b8c46d7184 authored over 14 years ago
Test case updates from Andrew.

8dce33221edec77dfdcda8cb570728496c9f65a2 authored over 14 years ago
Initial commit of IMetadata mock. Passes initial Image test cases.

49886437d049fc477fd99a45bbc62847de46687d authored over 14 years ago
Re-run of code generation (ome-xml:r583).

cd30993d5e6f393b5ca4ca98c66936c2b35f5683 authored over 14 years ago
Fixed abstract property references and accessors where the property exists only once.

db6a5272404105fd1b5a94c97d11df606aa73f88 authored over 14 years ago
Moved test cases to a mock based foundation.

aa9448c9790d56a56bebb2f093471929e6106b7f authored over 14 years ago
OME XML metadata implementation. Re-run of code generation (ome-xml:r582).

b57f3dec06402b33128ab3897b1349b845fdec55 authored over 14 years ago
Full support for code generation of OME XML metadata.

72beaa572c449bd3f210ed7a421c7a3957f7dcf8 authored over 14 years ago
Normalize template usage for store, retrieve and OME XML metadata.

3e1ecc49e37985a1c936c9eb33bf54bf1a7ffab1 authored over 14 years ago
Initial version of OME XML metadata and updated metadata store and retrieve. Re-run of code generation (ome-xml:r580).

55f5620d714084f94951c100b9148bbb08935cda authored over 14 years ago
Working getters for OME XML metadata.

83a729cac595b76e1b0ee7cae39c48bdf4d5d246 authored over 14 years ago
Re-run of code generation (ome-xml:r579).

a87ebab7dd91ec8fff3fb33448ca4ba32f2796aa authored over 14 years ago
Fixed non-complex properties of abstract-proprietary types not being code generated for.

2eb3100017648480a8e12547bb30ea8a78ae813b authored over 14 years ago
Further work on OME XML metadata.

8d484c3ea1bb61571ef78f8c8306a9faca36c4b4 authored over 14 years ago
Fixed xsd-fu command.

d53074277cef825d636a9428297364bd1589877c authored over 14 years ago
Reverting changes to Eclipse settings.

12a9524d1e52feb9eb8a46dc4e59307bacfd6b0f authored over 14 years ago
Removed erroneous classes from the OMERO schema.

86f65b8c8f1240edce40b27ff88172e9a69579de authored over 14 years ago
Initial version of OME XML metadata template.

c920e7a973fad2ac345d7e860e68c8b1f7172935 authored over 14 years ago
Setting transform to use the live web location for the April 2010 release.

2af8f1d9dae6b09a5927f56cc334a5696d0d51fb authored over 14 years ago
Adding sample files for the April 2010 release.

639c5006f4a48b75d0663d4b25fbdb3b0ba519b2 authored over 14 years ago
Metadata store and retrieve interfaces for examination and testing. Re-run of code generation (ome-xml:r571).

259b0d6c1b2b718c0c5e7cf86255a60d91fc2c5d authored over 14 years ago
Fixed base objects which are core in metadata templates.

0b44c095fc3e0354fa35492d08303050f2b728ec authored over 14 years ago
Changes to the web pages for the April 2010 release making it live.

f055e1299c1d76c3ac380945379c5ca2076058f7 authored over 14 years ago
Handle multiple paths in MetadataStore and MetadataRetrieve.

75486eb9ffdd1bbab3db5854d041fcf39964d579 authored over 14 years ago
Adding 2010-04 files to Schemas directory for webserver

29718a1d9f34ce6a39e99c5d2c5e7a6a2151e70f authored over 14 years ago
Updating Validator and Release with latest changes from Working

b6201ba347cf0a835596b4437c32fc1ff4b12b25 authored over 14 years ago
MetadataRetrieve template update.

fe1ecd0c2af571821bab6d4819d998264cd42215 authored over 14 years ago