Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/ome/ome-model

OME model (specification, code generator, implementation)
https://github.com/ome/ome-model

Merge pull request #123 from sbesson/ome-model_version

ome-model: allow to introspect version

a74284aa623493568851393942258f6eb3ab68c9 authored over 4 years ago by Sébastien Besson <[email protected]>
Merge pull request #122 from sbesson/ome-model_planes

ome-model: add support for Plane population

eb08ddca2294e5f17a5275efeb82ba1ee6289531 authored over 4 years ago by Josh Moore <[email protected]>
Use ome_model.__init__.py as the version holder

cff2064483b74ed234d045f14bc2b80817ebcf7a authored over 4 years ago by Sebastien Besson <[email protected]>
Add test for positive integer

d2a7b1585f60ca7b62cf36c31ad13deef4b105a4 authored over 4 years ago by Sebastien Besson <[email protected]>
Do not return in constructor

a2819f85a225889e3461c6a4b378c9286b1d46fa authored over 4 years ago by Sebastien Besson <[email protected]>
Only store valid Plane optional keys

dd554cac30275006f6d0b08b6b5938fee2dccefb authored over 4 years ago by Sebastien Besson <[email protected]>
Increase development status

7ebbfaa01b31c37aa0cedb5cf5ec73f2e9b703d4 authored over 4 years ago by Sebastien Besson <[email protected]>
Also fix license classifier

58114e1d30332b8636f7a72eaa27b651ee2d0af5 authored over 4 years ago by Sebastien Besson <[email protected]>
Fix Programming Language classifier

d8215e1714ef60c46976333cbeb48e203aa829e5 authored over 4 years ago by Sebastien Besson <[email protected]>
Add unit test for OME.Creator attribute

12fb583d8136d9d617ab74d1960ec5751fb343a3 authored over 4 years ago by Sebastien Besson <[email protected]>
Add logic to create version.py

c5f310405a75f82412b9aa7d49621ed5a28d8b02 authored over 4 years ago by Sebastien Besson <[email protected]>
Display ome_model version in Creator attribute

4d271db9ca909d25325bef3e782c020644e1c351 authored over 4 years ago by Sebastien Besson <[email protected]>
Add newline

a3699338ea6f9b825705407e8dbb81cde20a5fa7 authored over 4 years ago by Sebastien Besson <[email protected]>
Add test for plane options argument

598b66472436f950a3956e7a845c945d77e8fe30 authored over 4 years ago by Sebastien Besson <[email protected]>
Add first implementation of Image.add_plane()

- Add Plane object with required argument and optional dictionary
- Add check for the plane dime...

6ad96b5dce14f19053b5258051573311ff70fa64 authored over 4 years ago by Sebastien Besson <[email protected]>
Merge pull request #121 from manics/stdout

Ensure stdout works in Jupyter Notebooks

1d0d6eea1cf9bd57edd7936f828c81a7d21662e6 authored over 4 years ago by Sébastien Besson <[email protected]>
Merge pull request #120 from sbesson/ome-model_channels

ome_model: channel fixes

aa1457dd843301c67b92af570a4d8005974fb6a2 authored over 4 years ago by Sébastien Besson <[email protected]>
Add reason for sys.stdout missing .buffer

ad3c9248f64c90580cea3a7911c2089397c37dd9 authored over 4 years ago by Simon Li <[email protected]>
Remove Python 2 from experimental.py

12b336e9d9ad24f386128fc529099544209c65aa authored over 4 years ago by Simon Li <[email protected]>
sys.stdout may not have .buffer e.g. in jupyter notebooks

56b9719161d6d477df547cec5dded5bd3663f2cb authored over 4 years ago by Simon Li <[email protected]>
Fix comparison

49d212302bd30541e55ef64409b14377b069cd3a authored over 4 years ago by Sebastien Besson <[email protected]>
Test RGB image

2905ea9a01fed4f3dd47207822b183e304c27fdb authored over 4 years ago by Sebastien Besson <[email protected]>
Fix flake8 warnings

6f856b19616a8e800fcccdcad2fc081026c7a20c authored over 4 years ago by Sebastien Besson <[email protected]>
Add flake8 to tox.ini

0c4ff80388eeeb0fb23f3905440ae7790c750693 authored over 4 years ago by Sebastien Besson <[email protected]>
Add test for Pixels.DimensionOrder and Pixels.Type

388bcbb663ce478dc643067251255aa304c77049 authored over 4 years ago by Sebastien Besson <[email protected]>
Add failing tests for too many channels/samples

ce81e42b1f474eeb6340f03a9b2be3db98311d91 authored over 4 years ago by Sebastien Besson <[email protected]>
Improve channel validation: compare SamplesPerPixels to SizeC

16442753b0a4a88b361533c80a35457c5afcbca6 authored over 4 years ago by Sebastien Besson <[email protected]>
Add test for RGB channel

29a073915cedb57cb372073118ba7af3a7695f32 authored over 4 years ago by Sebastien Besson <[email protected]>
Remove comma

24ba88967b90dbff385c4ca35bb30581e5e50d35 authored over 4 years ago by Sebastien Besson <[email protected]>
Add test for channels with 1 sample/pixel

7d9315b0c3a6e2f109c35421acf610ce01d0c8a5 authored over 4 years ago by Sebastien Besson <[email protected]>
Add MANIFEST.in

0d6ecd588a0324ae49e13eb950c423be0ad00f75 authored over 4 years ago by Sebastien Besson <[email protected]>
Add tox.ini

5636c48a84d4b5ade742dd42b68e9c23c8157b47 authored over 4 years ago by Sebastien Besson <[email protected]>
Add first unit test class for ome_model Image element

8cc23bea784a1ef6f33c672f619d6a17795d7701 authored over 4 years ago by Sebastien Besson <[email protected]>
Convert Travis matrix in multi-language jobs

f22547ea293f652add8c75ea4661d935956bb311 authored over 4 years ago by Sebastien Besson <[email protected]>
Merge remote-tracking branch 'origin/master' into ome-model_channels

05f545ea53d92c4de0f3cb26917d4c16dc4aed1b authored over 4 years ago by Sebastien Besson <[email protected]>
Bump release version to 6.1.3-SNAPSHOT

835e6f2c6e3da3cb7f94f228458f707a83fd0b98 authored over 4 years ago by Sebastien Besson <[email protected]>
Bump release version to 6.1.2

7e34a65edab5fb3069a1d3febabf48e1d7e8cf5e authored over 4 years ago by Sebastien Besson <[email protected]>
Add release notes for 6.1.2

10c2cb6882b7645a0dc296da9f475f1e8a4c5e88 authored over 4 years ago by Sebastien Besson <[email protected]>
Merge pull request #119 from sbesson/python_deployment

Add PyPI deployment to Travis

843888ed5a990416b3df6d318028d61731a2bb49 authored over 4 years ago by Sébastien Besson <[email protected]>
Fix channel validation comparison

The number of channel elements should always be at most as large as SizeC.
A complete validation...

1ae8b583baed74633bdfea47aa97e549aa21b1ed authored over 4 years ago by Sebastien Besson <[email protected]>
ome-model: allow Name and Color attributes to be optional

These elements are optional in the OME schema and are irrelevant under
some conditions

7837240c9be24aa116229cf7279395716c26b849 authored over 4 years ago by Sebastien Besson <[email protected]>
Only deploy on JDK8

626935ed9756edbc69a5c5e6f501906b4d3cdc10 authored over 4 years ago by Sebastien Besson <[email protected]>
Add PyPI deployment to Travis

86076a4c7b1f94109b9eca30eeb3268f007cc022 authored over 4 years ago by Sebastien Besson <[email protected]>
Merge pull request #118 from sbesson/idr_link

Fix hyperlink to idr0013 URL

763d8cdb936dc26f409600b87fb1f188f8d9531b authored over 4 years ago by Sébastien Besson <[email protected]>
Fix hyperlink to idr0013 URL

Use the canonical gallery study URL for the provenance rather than the
individual well

d58d2d3e1ec79dcd2a578c32c42f56ecee7c22ac authored over 4 years ago by Sebastien Besson <[email protected]>
Merge pull request #117 from sbesson/plate_companion_sample

Add companion plate to the sample OME-TIFF page

9ffd05a89bbb27b67bfd555f97e025dbdee6861c authored over 4 years ago by Josh Moore <[email protected]>
Merge pull request #116 from sbesson/linkcheck_user_agent

Linkcheck fixes

cdf754fb3c52d99332048fd9edc62eb4135e4e4b authored over 4 years ago by Josh Moore <[email protected]>
Update docs/sphinx/ome-tiff/data.rst

Co-authored-by: Mark Carroll <[email protected]>

f8f6d21012edbdb94d85c88573c6018cc1d0bb41 authored over 4 years ago by Sébastien Besson <[email protected]>
Update docs/sphinx/ome-tiff/data.rst

Co-authored-by: Mark Carroll <[email protected]>

14c929fdef4e28d8b5c50e106217a9508c522ff6 authored over 4 years ago by Sébastien Besson <[email protected]>
Use PMC hyperlink

771546b140076b9035cdbf2ee171bc5139f7c8d6 authored over 4 years ago by Sebastien Besson <[email protected]>
Remove decommissioned JCB Data Viewer link

4b074e31bf5695b03f16460918c248f07aa8019f authored over 4 years ago by Sebastien Besson <[email protected]>
Add companion plate to the sample OME-TIFF page

bc77a32cfe93206b59a078e42ee188017a4f3a45 authored over 4 years ago by Sebastien Besson <[email protected]>
Add eliceirilab to the ignore list

87b7ca97fc9a251993e188620edc750182f40327 authored over 4 years ago by Sebastien Besson <[email protected]>
Fix missing bracket

629a21e1f9d17e812efb357fd8c0ff976986c581 authored over 4 years ago by Sebastien Besson <[email protected]>
Exclude NCBI PMC from the linkcheck

All requests from the Sphinx user agent seems to be blocked but requests are
returning 200 when ...

9056731b49802e390e961551deecaf1d90c31fe7 authored over 4 years ago by Sebastien Besson <[email protected]>
Add custom User-agent for linkcheck in conf.py

361760ed2f4f820f3193de1649c29246140c5dd2 authored over 4 years ago by Sebastien Besson <[email protected]>
Merge pull request #115 from sbesson/ome_model_fixes

Fix default z,c,t values of add_tiffdata

76825439ca250d280d8603443e380b1570b31f97 authored over 4 years ago by Josh Moore <[email protected]>
Fix default z,c,t values of add_tiffdata

daaf9014bb4e209c68c2f1d570b3ad35f773d893 authored over 4 years ago by Sebastien Besson <[email protected]>
Bump release version to 6.1.2-SNAPSHOT

fafa342d39a899ac29cabb9d4c082535d1993b90 authored over 4 years ago by Sebastien Besson <[email protected]>
Bump release version to 6.1.1

ef428fcb26cf7f50f71904f1c18eecd5e37104ba authored over 4 years ago by Sebastien Besson <[email protected]>
Merge pull request #114 from sbesson/http2https

Fix a few HTTP -> HTTPS redirections

6ba36b481e2a2fcf277d601106fb3cceab1bec90 authored over 4 years ago by Sébastien Besson <[email protected]>
Merge pull request #113 from mtbc/WiscScan

Fix doc hyperlinks to follow external site changes.

51c99e85a7b87b0c9c50ce129c1d4ce4106e2e9e authored over 4 years ago by Sébastien Besson <[email protected]>
Exclude strandls from linkcheck

d0aea2d65e0f15ac7b731f352c03cc11f4bd8720 authored over 4 years ago by Sebastien Besson <[email protected]>
Fix a few HTTP -> HTTPS redirections

b8354f9cdc9a30b10711f6a145585fb184e5002d authored over 4 years ago by Sebastien Besson <[email protected]>
Update hyperlink from GE Healthcare to Cytiva.

20b7c54257a7b45f62fbb00b5063104d7b7dbb63 authored over 4 years ago by Mark Carroll <[email protected]>
Update hyperlink to LOCI's WiscScan software.

8193f7903261918685b72834cee7a5eb12655877 authored over 4 years ago by Mark Carroll <[email protected]>
Merge pull request #112 from mtbc/update-link

Fix docs link to Josh Bembenek page.

d373711c54d7b55ccdebf25a0e6351b4a516c690 authored over 4 years ago by Josh Moore <[email protected]>
Update link: Josh Bembenek at the University of Michigan.

af5abbd25bfbcb18a0d44061b1b8f9d733ad7883 authored over 4 years ago by Mark Carroll <[email protected]>
BUmp to next development version

5268c26878dca8e87948e5ba61f1b592c6a403a1 authored over 4 years ago by Sebastien Besson <[email protected]>
Prepare ome-model 6.1.0 release

- bump components versions and require Python 3
- update NEWS to document main changes

8f490f5987062978fafe77a3e35f7bd24d211281 authored over 4 years ago by Sebastien Besson <[email protected]>
Merge pull request #111 from rleigh-codelibre/cpp-remove

Remove C++ support

94b8af51f6a41dce733ca3cc42469f63f54c28d2 authored over 4 years ago by Sébastien Besson <[email protected]>
Merge pull request #110 from mtbc/GitHub-OME-links

Don't check GitHub OME link.

0fa57ea6d7bfeb1d87124a3dc787b40acbe54877 authored almost 5 years ago by Josh Moore <[email protected]>
Merge remote-tracking branch 'ome-origin/master' into cpp-remove2

fcf037c0b770d3278a132217e83a4da6a19204a7 authored almost 5 years ago by Roger Leigh <[email protected]>
Merge pull request #108 from ngladitz/ome-creator

OME/@Creator

9ce34ee0414ec0dc803dd09ad3f87e8c5f187aad authored almost 5 years ago by Sébastien Besson <[email protected]>
Remove C++ support from xsd-fu

0df23970b8c73bafbbf1b3ea90dbfca44c406e1d authored almost 5 years ago by Roger Leigh <[email protected]>
Remove C++ link in README

d0674fd79a43cfffed324a388f97f2eedc3a7a6f authored almost 5 years ago by Roger Leigh <[email protected]>
Remove C++ code generation and sources

2133249ce03ebf3aba028fabf2d48f41cfde3197 authored almost 5 years ago by Roger Leigh <[email protected]>
Ignore GitHub OME links due to rate limiting of requests.

41ceb7571c0e7759703458fe971487c996774b1c authored almost 5 years ago by Mark Carroll <[email protected]>
Reformat linkcheck ignore list for Sphinx.

2917958c9684fda63c6c624bccd0dc502a277763 authored almost 5 years ago by Mark Carroll <[email protected]>
Update OME GitHub link to the relocated repository.

260c5ae9abeba34f396535ca910a0ca893fd3416 authored almost 5 years ago by Mark Carroll <[email protected]>
Merge pull request #109 from sbesson/sphinx

Sphinx & Python 3

380d7773143f93782fef6581693068a8794e8418 authored almost 5 years ago by Sébastien Besson <[email protected]>
Bump required Java version from 7 to 8

ce963233cddb2b92cdc63e7eccca59c703412b2e authored almost 5 years ago by Nils Gladitz <[email protected]>
Add accessors for OME/@Creator

848e76dee15397d9eb1c1dda15c8c1bee2452de6 authored almost 5 years ago by Nils Gladitz <[email protected]>
Install Sphinx using Python3 in Travis

aa017150d595d34c46deab237f8ac6f19214f8e2 authored almost 5 years ago by Sebastien Besson <[email protected]>
Uncap Sphinx version

This should allow recent Sphinx versions to be installed in a Python 3
environment

0f07403627a5b26a4cb9a22db1e861b4b9714c7d authored almost 5 years ago by Sebastien Besson <[email protected]>
Fix copy&paste errors and minor cleanup

f3004dba4f372e259003bfa395a76ba6fb9c1530 authored almost 5 years ago by Nils Gladitz <[email protected]>
Merge pull request #105 from rleigh-codelibre/python3-cleanup

Python3 cleanup and add Python 3.8 support

6a0c3f7f0de7224b75d6dd27f7f8c6d969604cbb authored almost 5 years ago by Sébastien Besson <[email protected]>
travis: Run mvn to pass all options explicitly

77b24e082a78887ccbfecd2c9dae24100f3bea08 authored almost 5 years ago by Roger Leigh <[email protected]>
travis: Move MAVEN_OPTS outside matrix

6ff58099fae55d2d323d763ffe34abf8b21305ba authored almost 5 years ago by Roger Leigh <[email protected]>
travis: Force use of MAVEN_OPTS

d171789b476f9970a26646b150a1039a8bd3691b authored almost 5 years ago by Roger Leigh <[email protected]>
travis: Fix use of MAVEN_OPTS which was being ignored

See: https://github.com/travis-ci/travis-ci/issues/4613#issuecomment-135215956
https://stac...

25c7fbd296a0872a1ff507eb47908f7ab5f06aea authored almost 5 years ago by Roger Leigh <[email protected]>
travis: Drop python2 testing

492f382f0fa920b6868640d4d69071239dbdd18f authored almost 5 years ago by Roger Leigh <[email protected]>
xsd-fu: Remove python2 compatibility in generateDS

0842457148861e64d81ba37c096ae81c1eaf83c9 authored almost 5 years ago by Roger Leigh <[email protected]>
xsd-fu: Remove python2 compatibility in ome_model

4ba85552301342eaf2b574395f0e828d86b4c561 authored almost 5 years ago by Roger Leigh <[email protected]>
docs: Remove python2 compatibility in sphinx configuration

9ed62e7d86286c4a0010d40a2cb5385dc55ac00f authored almost 5 years ago by Roger Leigh <[email protected]>
cmake: Remove python2 compatibility in helper scripts

53801dc09ab6c7ce8f58f0dd43e0e0cbb22fcb5c authored almost 5 years ago by Roger Leigh <[email protected]>
xsd-fu: Remove python2 compatibility for all OME code

eaa6c33a07653eeb32227968ac0ddafae49f7d2d authored almost 5 years ago by Roger Leigh <[email protected]>
xsd-fu: Update GenerateDS with 2to3 from Python 3.8

6448fd0df68fe43a7cdd4167047b78c6bc5f746a authored almost 5 years ago by Roger Leigh <[email protected]>
xsd-fu: Update Genshi with 2to3 from Python 3.8

783d22a6c94bd31be3c9d6df5b780e53e2752563 authored almost 5 years ago by Roger Leigh <[email protected]>
xsd-fu: Upgrade Genshi to version 0.7.3

New upstream release from https://github.com/edgewall/genshi/commits/0.7.3

b6f7f03c8994ec860a4301ea6b287a05faca485d authored almost 5 years ago by Roger Leigh <[email protected]>