github.com/ome/ome-model commits | Ecosyste.ms: OpenCollective

cmake: External bioformats: Correct option propagation and subproject installation

4a91d2f64f036523afa6e1a812ae628822e4eaf0 authored over 9 years ago

cmake: FindXercesC: Use different library name on Windows

c6a326dbef985916055fbe6c67a57790ded8060e authored over 9 years ago

cmake: MSVC portability for Boost checks

c938d21ee424cde55d0acd6baf5ea94738d0579f authored over 9 years ago

cmake: Split BioFormatsSuperBuild into external build file

b51a8b6adaefea0a31750982e7d23a939dba98c2 authored over 9 years ago

cmake: ExternalProject_cmake_install: Correct comment

032e7fc65e61dd8f12899afb25dba9cc41c39a3b authored over 9 years ago

cmake: External icu: MSVC portability

3d7708d4ca0287e4365ffe95678ca1ab87c491a2 authored over 9 years ago

cmake: ExternalProjectEnvironment sets Windows include and lib paths

dbdaeb4ae462ae83cc3464007d13270ae7146a93 authored over 9 years ago

cmake: External xerces: MSVC portability

a61eb407f5eed4bff2be7e8dfb1cfeec904eda53 authored over 9 years ago

cmake: ExternalProjectHelpers propagates platform details

17f3bc620e473a01fdac493fc55910e95e1a2968 authored over 9 years ago

cmake: External boost MSVC support

0901020be5e007cede3b1c5671b94d4cd9e11276 authored over 9 years ago

Add a merge build profile to POMs

This allows the snapshot repository to be changed; by default, the
latest-build profile (== ome....

6602dd598a420c0ac3b650dffcb6221a52581931 authored over 9 years ago

cmake: External png: MSVC portability

4815812324ded476e8669b9e1f91cf6f88dc6e4f authored over 9 years ago

cmake: Pass EP_SCRIPT_CONFIG as a FILEPATH

01345128cbe447e56aab40038d57f324ae6c3e54 authored over 9 years ago

cmake: Factor out options for superbuild

56bb0f01f2dafc35480d589077d416029a0441b1 authored over 9 years ago

Merge pull request #1859 from rleigh-dundee/cmake-sb4

C++: Fix external zlib, bzip2 and tiff to build on Windows

0de65054c134ed9caa63201167d0ee7bfff82103 authored over 9 years ago

merge with upstream

6d6e5ee9d65521016f044acc0a373dba12884855 authored over 9 years ago

cmake: ExternalProjectHelpers propagates CMAKE_GENERATOR to scripts

1376499a30f1823d588d98e2b527cb8b703ef90f authored over 9 years ago

cmake: Add qtgui option to disable Qt

ed043645ddf117ed95d329becede79e92b22e608 authored over 9 years ago

cmake: External tiff: Update VS snprintf workaround

770fbaef30738f8ff9723d9cd44970be617fbc01 authored over 9 years ago

cmake: External bzip2: MSVC portability

c6954c18e823ad972b17fa104fab86a5e538c8c7 authored over 9 years ago

cmake: External zlib: MSVC portability

920b176b30786670b18465cfb03ac499810d8d54 authored over 9 years ago

cmake: External tiff: Enable install with MSVC

49a9f5e3f14e13ed84342325419729a126ecfd46 authored over 9 years ago

cmake: ExternalProjectHelpers: MSVC portability

cc01117d0498129c68ef4a6e342d7c1c047806a5 authored over 9 years ago

cmake: Add helper script to install cmake projects

9669f0837c5c1df4c637c4be1b9b1ca06ad86ff6 authored over 9 years ago

Merge pull request #1858 from rleigh-dundee/cmake-sb3

C++: Add cmake superbuild logic for icu and xerces-c

98c5efc553c0316e6d9188824a38fda18ae26af7 authored over 9 years ago

cmake: Improve external build path handling

Generate helper script to propagate superbuild toolchain
settings to subsidiary builds. Add hel...

aacf584f7a40dac15e8b57c4b487b0845c7163eb authored over 9 years ago

cmake: Remove unused External_bzip2_build.cmake

9b37748cff46f0472fc43d106caced06f61c24a8 authored over 9 years ago

cmake: boost: Correct typo

1f0ebdf3152d0201a4247684579c9aa7ce0aaa71 authored over 9 years ago

cmake: Add icu as an external project

84e7913fa3a159cb374d338ea471a8767267e00a authored over 9 years ago

cmake: Add xerces as an external project

eef270499a186172f02786d9922cd4c730be1337 authored over 9 years ago

travis: Move non-java components to oraclejdk8

a97a09d122bea0fbf6991dff001d8658849082b7 authored over 9 years ago

cmake: Add missing ignored file

7acfff4d0cb64b8566a5c2a6bf5e77d0c5cb6014 authored over 9 years ago

cmake: Add tiff as an external project

9745566e94a2cf4c38861ffe2ba6df4502746383 authored over 9 years ago

cmake: Pass all toolchain settings and global options to external projects

17ac5aa21ee61daceac4d7ec4585284fb3850e57 authored over 9 years ago

cmake: Drop superbuild debug message

d522f727965923f8e1552e0a6341b5639ea47945 authored over 9 years ago

cmake: Add boost as an external project

71e2c85a0e2b3c7b5bce22d055ebd2b51806f254 authored over 9 years ago

cmake: Build bzip2 using CMake directly

79a3d94ffce7133dfbd0c3a85369bc37f7d95612 authored over 9 years ago

cmake: Add bzip2 as an external project

95d9ff67cae10ba78ecf90082489c15c55a4ee4d authored over 9 years ago

cmake: Add superbuild include and lib variables

957b64403dbb59792e4d8f0f8a776ae05c779784 authored over 9 years ago

cmake: Add external update logic to external projects

db533edcb58b99408761eb6b12d4cd3b99938297 authored over 9 years ago

Also include ome-transforms.xml in Maven specification JAR

While trying to consume Maven specification.jar for the OMERO exporter
integration tests, the tr...

7a53e3dc4274b6d4e888f3c779cdffe1af1ca068 authored over 9 years ago

Merge pull request #1830 from rleigh-dundee/cmake-sb

cmake: Add toplevel SuperBuild two-phase processing

f7ab2b575104c08cb59d8e0399979ce8c9b9c397 authored over 9 years ago

cmake: Add ExternalProjectHelpers

4cd6fac653e402099814b67975df11b4a51ef78a authored over 9 years ago

cmake: Add toplevel SuperBuild two-phase processing

962b0a49f8c4d777eb6327d657a9bd58a0673e1b authored over 9 years ago

Merge pull request #1818 from rleigh-dundee/cpp-writerexample

C++: Minor writer improvements and writer example with documentation

1a52c846e96bf53bb286401641c392873a542ba7 authored over 9 years ago

Merge pull request #1814 from rleigh-dundee/cpp-units

cpp: common: Add units of measurement support

11ea1d7453bfc9b5c4212db8f7d31b89ec5d3029 authored over 9 years ago

Merge pull request #1807 from rleigh-dundee/plane-state-cpp

C++: Add plane state introspection and manipulation to reader and writer interfaces

a00f52b72decec03a82ce3f1015e451115dfb66f authored over 9 years ago

Merge pull request #1825 from rleigh-dundee/specification-psi

specification: Correct psi documentation description to pound-force

f05a4399d8999a299c40f21287b74a4dd8d62a56 authored over 9 years ago

Merge pull request #1820 from rleigh-dundee/xsdfu-javadoc

xsd-fu: Add javadocs to Java metadata templates

c4c5a02b33472f64df4643d000db0fcd28b1dd13 authored over 9 years ago

cpp: common: Correct line and point base unit definitions

5e7ca029cf1a6ce05762fd263246045749184bcc authored over 9 years ago

cpp: test: Add model unit data to unit test data

6e9deb76b120719ca84fe01ca430f07d9c923a8a authored over 9 years ago

cpp: test: Improve ome-common unit tests

- Make the test precision customisable per-test in the UnitConversion
test template
- Add a Un...

7ad0ec09f3de2dcf4408e8132c39ef5bff9a6060 authored over 9 years ago

xsd-fu: Remove Doxygen markup from Java template

669d83c7ad1483e609de6bc6814259bdbf05d23b authored over 9 years ago

specification: Correct psi documentation description to pound-force

ca208de6b06c4499f86f8d7c791a1a3e97a85275 authored over 9 years ago

cpp: bioformats: Correct FormatReader sentry plane state resetting

c49f214c9795282d6cf734b22c308d4b20374af6 authored over 9 years ago

cpp: common: Correct astronomical unit typedef

7fd479565fcaa9917aa5129a4867e9fb4f52ee63 authored over 9 years ago

Update POM version numbers to 5.1.3-SNAPSHOT

8d4b8c6895ee37c20d84521a773e089482494c21 authored over 9 years ago

cpp: ome-common: Add nonstandard time units

bc718f32da11ad02c59cd78d4d2ed592a352c45d authored over 9 years ago

ome-xml: Document OMEXMLMetadata resolveReferences method

7809e9353517a48092d3f82b215f195ec68c4918 authored over 9 years ago

xsd-fu: Add javadoc comments to FilterMetadata template

cbb6317ccf73980ec0cc18d437aa7867f82d7d6e authored over 9 years ago

xsd-fu: Add javadoc comments to MetadataStore and MetadataRetrieve templates

fbb760019e39e72e67c69d248544b50826fe9160 authored over 9 years ago

cpp: examples: Add OME-TIFF writing example

2822ffac5c36ac2474f648ea639ba794c3f4406f authored over 9 years ago

cpp: bioformats: Increase detail of TIFF IFD exception messages

3e47a47555001053bb848791c1d6489cfd9d1c44 authored over 9 years ago

cpp: bioformats: Indent PixelBuffer

d7178ba082fcd513a29e2bf8c19ada5f088589bf authored over 9 years ago

cpp: bioformats: Most-derived readers and writers call close on destruction

Virtual method calls don't call the most derived class methods in parent
classes during destruct...

c2a268f5838c42aa47fd3961018318dbef73861b authored over 9 years ago

Update POM version numbers to 5.1.2

f21a2524b04b9b4e98ed0a18002794c8548ef73e authored over 9 years ago

cpp: test: Check nonconvertible length units

Test pixel and reference frame units; since conversion is
not possible, test self-assignment.

c1105d8162229cfd7b324ee5a38b1cb5fd9e52f9 authored over 9 years ago

cpp: common: Split units into separate headers

863bd41bafa6da05304314cdf4e04bceea9fa5a1 authored over 9 years ago

cpp: test: Split units tests into separate files

The template expansions can exceed the 16-bit limit on FreeBSD and
Windows, particularly when we...

7ec59066010253092626577efa934641edc0ad20 authored over 9 years ago

Merge pull request #1799 from rleigh-dundee/cpp-timestamp-parse

cpp: ome-xml: Correct intermittent incorrect Timestamp timezone offset parsing

6f2edad4798728f27dcda1ec0c83fa67e83f7ebd authored over 9 years ago

Merge pull request #1802 from rleigh-dundee/cpp-qtns

C++: Document and correct use of qtwidgets namespace

cd45d8dcbff856de615f5b668912c807edc20ec2 authored over 9 years ago

cpp: common: Add units of measurement support

a00d0e6a2504f15cdca7228755febe10c9a03a89 authored over 9 years ago

Add private method Javadocs for the formats-api component

5df17df52cca11af578fa12865c85cb8b2e56af5 authored over 9 years ago

cpp: bioformats: FormatReader sentry saves and restores plane state

70831ae9720b4368b3f7962546726fbd722f177a authored over 9 years ago

cpp: bioformats: Add getPlane and setPlane methods to reader and writer interfaces

8e1a9aebf1bad134ad811236a3a818b17d5ee49a authored over 9 years ago

Merge pull request #1791 from rleigh-dundee/cpp-ometiffwriter

C++: Add OME-TIFF writer

375a5bd607375d6b360456ac068f7a1466789e5e authored over 9 years ago

Merge pull request #1797 from melissalinkert/12848

CellSens VSI: fix channel count when multiple pyramids exist

0a7f8957acffb35684d00feb5b7d73417c727a4c authored over 9 years ago

cpp: qtwidgets: Correct TexelProperties namespace

94f51bb198e7aee4ca9b473f3d8d6b59b3a883e6 authored over 9 years ago

cpp: qtwidgets: Document qtwidgets namespace

ed380031b09dcbbccc247ba8453701f469c53554 authored over 9 years ago

cpp: fix series index when calling setCoreIndex

f99ad8b3322003beba7b4c3e321baca675c7a0e8 authored over 9 years ago

cpp: ome-xml: Correct intermittent incorrect Timestamp timezone offset parsing

- Add sentry (not for this bug, just for general correctness)
- Use a string rather than a chara...

f6955b3c98e5e977e2495aa95af510e5c4e9b55b authored over 9 years ago

cpp: common: Add workaround for broken header in Boost 1.58

See https://svn.boost.org/trac/boost/ticket/11283
boost/variant/detail/element_index.hpp uses bo...

1d4a4eb5e27376def6c4a37dbc40afe79def8a59 authored over 9 years ago

cpp: bioformats: OMETIFFWriter uses explicit tiff namespace

While the code is correct, it does not compile with clang++
on MacOSX 10.10 despite the use of "...

ef784098f61e8746e3ecf145bce15e353353c3ac authored over 9 years ago

cpp: bioformats: Add OMETIFFWriter

f1a026934895799ec0494a465831b35be186a582 authored over 9 years ago

cpp: bioformats: Move EndianType enum to Types.h

This is more generally useful than for pixels alone.

9e1af92278b03c6ff1e5b3a67912f7ccff472b14 authored over 9 years ago

cpp: bioformats: fillMetadata sets ImageIDs

d46f4c7ebfba98ee694bff8a8ddaef89d13cc203 authored over 9 years ago

cpp: bioformats: Update doxygen comment for tiff/Util.h

7c785aa049fbb423f0d4a4a5c997e075c0add8b6 authored over 9 years ago

xsd-fu: C++ OMEXMLMetadata: Add warning comment to generated OME-XML metadata

8e313d5ba8b8e016ea93006f680ab923d41326c9 authored over 9 years ago

cpp: test: Suppress gtest variadic macro warnings

43828434fa9e744051bfbfc879750642622eb49e authored over 9 years ago

cpp: internal: Add url.h for URL strings

346588572b8a7d2b6cbdad0a793621ae5b417c08 authored over 9 years ago

cpp: qtwidgets: Don't use MSVC pragmas with GCC

0123dcde3a5cff080ee7b1a3634bad314d4fe5c3 authored over 9 years ago

cpp: test: Use local test header for variant tests

125a51d10c368722c380930ae7e555f2ce2b1d80 authored over 9 years ago

cpp: common: Add make_relative path function to filesystem.h

44a028779a1f57334ad9fc0bdb4a5caaac93c099 authored over 9 years ago

cpp: common: Add createComment method to dom::Document

0c32c2e4d814e8257eb4fa531935b65a76f2f333 authored over 9 years ago

cpp: bioformats: Split common structures from OMETIFFReader into OMETIFF.h

To be shared with the OMETIFFWriter

d490f5f13ae24c8bab36c138783e4cbddbc48316 authored over 9 years ago

cpp: bioformats: FormatWriter detail does not declare saveBytes

It doesn't implement it, so this is incorrect.

b7609ed273d5abe854eeb2a59b34dd06a354b531 authored over 9 years ago

cpp: bioformats: MinimalTIFFWriter flushes IFD with nextIFD()

76db57069e7329557117ed0550ab2c0a19ebfe88 authored over 9 years ago

cpp: test: Correct channel test sample image names

8f524d622044eb09886884110375304af9ec241c authored almost 10 years ago

cpp: bioformats: FormatWriter::setId always compares canonicalised paths

27f6c3eeb39c7ff3d3c80e81eee257df060e0d0a authored almost 10 years ago

cpp: bioformats: FormatReader::setId always compares canonicalised paths

7e25c6b86261e763a1dcdb8a4e12f020aa41f716 authored almost 10 years ago