github.com/ome/ome-model commits | Ecosyste.ms: OpenCollective

specification: xsdfu annotations are not in a namespace

b37b9ebacff5a082bcb005843795c8724bc343bb authored over 8 years ago

xsd-fu: Use Python 2.6-compatible ElementTree functionality

4210eeb25599e41a7a9cd9b050c73b5e0c2c18af authored over 8 years ago

specification: Add metadata for unit names and enums

In addition to the symbol in current use, add:
- name (including plural form)
- alternate name (...

b15cdd3784234dcdd4f9722de1e8b82c39b843b2 authored over 8 years ago

Merge pull request #2416 from sbesson/cppwrap_decoupling

Remove JACE C++ bindings from the Bio-Formats source code repository

9fc8c042cd4ccd080593d64c326102f24c265b2c authored over 8 years ago

Merge pull request #2319 from dgault/codegen-BinData

Codegen - Adding BinData

9321afd351addc0776b6cd6b431fea42048cc592 authored over 8 years ago

formats-api: MetadataConverter: Add missing BinData conversion functions

dfc3f4030ba2300ae984410c79ffbf50d06254e5 authored over 8 years ago

Remove JACE C++ bindings from the Bio-Formats source code repository

The bindings have been decoupled to a separate source code repository

034f51ba3af6026c6a5f92ee85358a39d8349a6c authored over 8 years ago

Remove FATAL logging since the root is at WARN

7aad015d77ac4fafb860b7309cde998d172f37b9 authored almost 9 years ago

Unify logback.xml used in testing by Maven and Ant

This should default to using ant/logback.xml as opposed to tools/logback.xml
which is the comman...

b8bd0e173042a3ef35112942077a9d33c67b8b5d authored almost 9 years ago

Java indentation fix

f6de6fa3d2fc1a5f9fcb32cc44225c18d4e91a76 authored almost 9 years ago

CPP templates - new line discrepancies

26f87e435876e09949ea4fb58ab9b46a22b8a8a2 authored almost 9 years ago

CPP templates - new line descrepancies

3f609602b42a1e61c764e2671f5f4175145ec34b authored almost 9 years ago

New line cleanup

0c47dc79761ca1dd6780712276e725a2d8020d1f authored almost 9 years ago

Conditional primitive base update

e72dced4a5d98a0449b6404f3199345c212b3826 authored almost 9 years ago

cmake: Remove VC11 faux variadic templates workaround

c1fbdbd00279e6a38540cc584a02f21705b9457b authored almost 9 years ago

Conditional import of DataConverter and specific primitive base type

a82951e532f2092603aacd482f133725d1bcc060 authored almost 9 years ago

Template - whitespace to tab fix

f9341e3698f59e20fe351309c2b28483b80e032e authored almost 9 years ago

Merge pull request #2369 from sbesson/mapannotation_base

Change MapAnnotation type to be an Annotation

24e2268b7ae9f337c01c5af26e1c57b4e369161d authored almost 9 years ago

CPP - base64Binary type map

74370724e0be98275a18b38a54795b6669785097 authored almost 9 years ago

BinData - update to use separate try catch for each property

66495e9fc596d5927dd1eaefbbb084953c61ff9d authored almost 9 years ago

Base64Binary encoding and decoding in update and asXML

4f0426276b9f3e384a6df0e00ee848d088a9f3ce authored almost 9 years ago

Whitespace cleanup

43f6b8918a8b9abea356e507cbcaaaffe91a3a9d authored almost 9 years ago

Whitespace cleanup

c4ca788578dfb1d713f25587414f978f4f2a68db authored almost 9 years ago

Merge pull request #2363 from sbesson/pom-merge-profile-drop

Revert "Add a merge build profile to POMs"

884ceb266b2f4c70f7987912a071c193612711db authored almost 9 years ago

More annotation base adjustements

c14dd8a8adfa4ec53d5f3c945692172edc5d9354 authored almost 9 years ago

Change MapAnnotation type to be a BasicAnnotation

6f4c2cb7b9a2080e86c85f637f6987b85d11c982 authored almost 9 years ago

Merge pull request #2359 from rleigh-dundee/mapannotation-downgrade

cpp: transform test: Handle MapAnnotation downgrade

768db92cd0c79db1296ad745e203a1f4db99a87c authored almost 9 years ago

Revert "Add a merge build profile to POMs"

This reverts commit 4d9b7966bc1383c9f30bc90c4cee843c0f0fe51a.

99d9d716aca037e87a2de650cedb35786cfdb8ac authored almost 9 years ago

cpp: transform test: Handle MapAnnotation downgrade

c91ab03adb9ba715d551d948bb58fbb0d5414731 authored almost 9 years ago

OMEXMLMetadata - re add hardcoded bin data

3acce72f7545b0d7bbf2bb0cd1e0da3a16dd9628 authored almost 9 years ago

Revert POM version numbers to 5.2.0-SNAPSHOT

c5aeed68d0a140046620724ea6bab92cc6761212 authored almost 9 years ago

Model - METADATA_OBJECT_IGNORE fix

99bf44c7c5f8661d4c073b98dcafa980abd44920 authored almost 9 years ago

CPP Templates - Re add hard coded bin data for older schemas

e7718ce8790c972767050c5b331e6cb1eea7556c authored almost 9 years ago

Update POM version numbers to 5.2.0-m3

a1807962dd702f95a828ad25714fb36c8a6ed91b authored almost 9 years ago

MetadataRetrieve LineEnding fix

c69f29a6ecfa60ad7d569f20c4b746e18d55aef1 authored almost 9 years ago

Revert "Gen sources debug statements"

This reverts commit 4c79b95c2c5cf2d96ab8842690cc3344b5c74445.

59df66fc46ed6072369987ce03c008896c1ec2e4 authored almost 9 years ago

Gen sources debug statements

643102b082e7e553f0943e6a530523ffab4fd717 authored almost 9 years ago

Add Mask and BinData to XMLMockObjects

adf335b9a1c0270385985604ac5a25558ab6e36a authored almost 9 years ago

MetadataConverter - Add mask and pixel bin data

35a7b5da5792c828a7406b0172a5dee0444095cc authored almost 9 years ago

Merge branch 'openmicroscopy/develop' into codegen-BinData

ac08fd2c36a17cf3e7a84a838e8e31bb377d3845 authored almost 9 years ago

Templates - Model Object

In the update function, for primitive base types the property value
should be read from the elem...

0b5c0f7ccf5f1eefb2d4fd93b46c7f1db4e1c72b authored almost 9 years ago

Templates - Update model object

For primitive base properties, xml content should be added as text
content of parent element rat...

0da8c166007d01aabbf46fbe1244f41357f6c1be authored almost 9 years ago

Add new global set - primitive_base_types

1d583f003ef701928110eec0a11a56ec78c5323e authored almost 9 years ago

Update default name of primitive base types

2bc3c1977a9b26a18b99ff6370f5dbcfb6d5a9ec authored almost 9 years ago

Move base64Binary to its own simpleType

4075346eb09393673bb201c1e28528195feda0bd authored almost 9 years ago

Fix plate indexing in XMLMockObjects with multiple screens

This should prevent the creation of experiments with duplicate IDs.

17c016756fdb207e1cdd0aef219a65e0d6ed7517 authored almost 9 years ago

Remove base64Binary from generateDS simple type tuple

37b120a6f00be84382a27853ae74c3f65f5a8708 authored almost 9 years ago

xs prefix fix

618d5a47e9f7a6b90f0a29e210e67ff0e1c170c5 authored almost 9 years ago

Add xs prefix in schema

Required for generated

96cdd844b09e4a908522439e46a78e6ddd46ec37 authored almost 9 years ago

Templates - CPP Metadata

Updates for OMEXMLMetadata

91cb58a541d8346a5d12e6984b673198308b3601 authored almost 9 years ago

Templates - CPP Metadata

Updates in line with Java template changes.
Note this will not be compatible with schema 2013-06...

14e5d082762a012e7eca1c72e4519fdb5bf66a39 authored almost 9 years ago

Templates - Java Metadata

Adding aggregate metadata

a5ec0b3d86e35e994198ac078c60572311729e24 authored almost 9 years ago

Templates - Java Metadata

- Remove hardcoded BinData functions
- Remove custom handling for concrete and abstract substati...

102d278d4d5e3615351b737fbcbd516d5a75ee52 authored almost 9 years ago

Template - Java model

Updating the Java OMEXMLModelObject to deal with raw byte[] data

c268a825e866cc82e164af25c874de1bd54543b5 authored almost 9 years ago

xsd-fu - Update resolve_hierarchy

Updating resolve_hierarchy to deal with abstract types without
requiring custom handling in temp...

b0dabb6e702fb85459428cae652957214c8ff5ce authored almost 9 years ago

Property - adding new hasBaseAttribute flag

f7057fa96ae9d79d6aebcbd84c53aa7f3a16b5bb authored almost 9 years ago

Model - If base is primitive then add as a base attribute

0f4358a5b673279c1af366ae546a60c298843281 authored almost 9 years ago

Object - New add base attribute function

28e069aa71a1ad017f52050d417d72bf67688227 authored almost 9 years ago

Language - Add mappings for BinData

4db8bad19e2981d0287e0b4c0b270b2d4bec5392 authored almost 9 years ago

config - Remove BinData from ignore list

2c6627adb894545271d5a53b772b030af178d94a authored almost 9 years ago

Schema updates for BinData

Change to xs:base64Binary to allow base64Binary to be parsed by
generateds. Also change the maxo...

aee1489eed586b27a557a1a12019430c7a09f1cd authored almost 9 years ago

Merge pull request #2307 from dgault/xslt-tokenize1.0

Transforms - String tokenize xslt 1.0

d53d00272adf53de6556c1e97656413dd31a9949 authored almost 9 years ago

Merge pull request #2302 from sbesson/fake_hcs_regions

Fake reader: HCS with regions

c0f81eb31441c3991f3c1c337a9e4fc504b6b824 authored almost 9 years ago

Update to use node-set

71f41a1d239c90851be1b372d2ccf0c0be2a4055 authored almost 9 years ago

String tokenize - xslt 1.0 solution

ccadf82ac5e44888317318a86bc1ca800bf8980c authored almost 9 years ago

Merge pull request #2303 from rleigh-dundee/preprocess-enums

cpp: ome-xml: Add enum value list macros

49c5d1b8480a13612c9ec005695c2e69a3f6fcd5 authored almost 9 years ago

Merge pull request #2288 from sbesson/ome_xml_samples_resync

OME-XML samples: synchronization and cleanup

beaa9f3d1e2378b79bec94b77e91f5ad0da1cd78 authored almost 9 years ago

cpp: ome-xml: Disable nested enum macros on Windows

3fb57a254c2309963bdd6d7e0a81c4c9c45eaca2 authored almost 9 years ago

Add compatibility layer for create screen/plates with microbeam

- extend XMLMockObjects methods to pass a flag specifying whether the microbeam
should be create...

42eb7f13bb7c5dd4e9c559d95bce4c2abef66566 authored almost 9 years ago

Remove trailing whitespaces

895fb2e2c5396b2e36b550b1e2afe7575faa3268 authored almost 9 years ago

Fix indentation to use spaces instead of tabs

for f in $(find . -type f); do emacs -batch $f --eval '(untabify (point-min) (point-max))'; done

de8c98608a6ac1a2e1fe172a05501cdd83d71d2f authored almost 9 years ago

Create experiment without microbeam manipulator by default in createPlate()

This should allow HCS fakes with regions to be generated

9249b930ffc0b17f2b46635100c955d1002b077e authored almost 9 years ago

Updated indentation using emacs

for f in $(find . -type f); do emacs -batch $f --eval '(indent-region (point-min) (point-max) ni...

651b40aab14f2831eea5cf4195c4babed137794f authored almost 9 years ago

cpp: ome-xml: Add enum value list macros

This is to allow direct code generation with the C++ preprocessor
by looping over the available ...

391728e7261b09755727ce91be478a954dc05352 authored almost 9 years ago

Exclude failing mapannotation.ome.xml from the transform tests

7fe7515cf0f07bcec7d7b3bd12ce3e2bf14d7aab authored almost 9 years ago

Fix TransformTest exclusions

09c52a530c3e1218f018e0e8d6e614c4c20016bd authored almost 9 years ago

Fix broken check

b0d7d6fec681b2812d135e98da32270f3e2a3b38 authored almost 9 years ago

Update OME-XML C++ unit tests

09a7493c25dd3f7bb4631a975ca72cbb0dfc1234 authored almost 9 years ago

specification: transforms: Untabify

1c859a9c70bfadeccb0c765f5d46cee8d9bfaea6 authored almost 9 years ago

specification: transforms: Reindent to use two spaces

65f4a0f57b57ce07e0c20bdb0230630fce0ff6ab authored almost 9 years ago

Fix schema validation targets

6450acf5c6181c07d86904e2776e9a67714ea622 authored almost 9 years ago

Fix indentation of all OME-XML samples

For each OME-XML sample, the XML was reformatted using
XMLLINT_INDENT=" " xmllint -format

eb769566ac5a108a8ec94e6062cacb27f4a0d79f authored almost 9 years ago

Rsync latest live OME-XML samples

524a1b85fc1bcf177e7a03ea87755a3d5720dc51 authored almost 9 years ago

Synchronize OME-XML samples with the upstream sample changes

d03c153505d6183a601e882eddf67ad03cb15e76 authored almost 9 years ago

have upgrade adjust MarkerStart, MarkerEnd values to Arrow

0f7ea0942542f56bd9201eafff9dc586ac62914c authored almost 9 years ago

remove LineCap from main code

147c6950ceb87d3daeac8925b9cdc81a7eb87f8e authored almost 9 years ago

have upgrade remove LineCap attributes

9fcf5589463e63961e4ec40e3808592470158dcc authored almost 9 years ago

add note that we may remove FontFamily from the schema

2232f25192bcb69f1f21549a39825ece0edad66f authored almost 9 years ago

improve style of FontFamily documentation

b5d5873a163d22e3f82ec6cb13766acc04b11d81 authored almost 9 years ago

remove Circle and Square from Marker

see https://github.com/openmicroscopy/design/issues/18

376a84f25ae274d2b9ed9ded178bd6046e8a4208 authored almost 9 years ago

drop LineCap from Shape

see https://github.com/openmicroscopy/design/issues/17

e520eb357bda4fddfa1d8e12acd1432dfccdd325 authored almost 9 years ago

specification: Reindent 2016-DEV0 schema

4db9961543a4fcaaf4d0e8ebf7ee5f4b6b69bf9a authored almost 9 years ago

Merge pull request #2277 from rleigh-dundee/naming-fixes2

cpp: ome-xml: module: Rename OME_FILES_* environment variables to OME_*

35c929e5a0fac5297671e0a028f70ebbd0f499d3 authored almost 9 years ago

cpp: ome-xml: module: Rename OME_FILES_* environment variables to OME_*

9f5fb0e98fea214812cd4c573dd1d3535cd02348 authored almost 9 years ago

Remove unwanted comment

59560a32a5de4620e9e937b2d53768fb5d433ba4 authored almost 9 years ago

Merge pull request #2160 from dgault/ShapeComplexType-develop

Shape complex type develop

1fddda35725c308fbf582cf1bbb5993d23685e25 authored almost 9 years ago

Indent and white space fixes

839c9510fcc617fd507db3934b97d96b5e5bfc57 authored almost 9 years ago

OMEXMLMetadata - abstractProprietary update

e4172cb1970a1377b057f2f7d1e558c6ce7b2568 authored almost 9 years ago

Replace missing modelObject definition

4f53fac687025b8a34b1e8271c6e13cd9c3fa9c2 authored almost 9 years ago

Spelling mistake

239a530a2399d94129d9c512157f6075a70f43f8 authored almost 9 years ago