github.com/openemr/cqm-parsers commits | Ecosyste.ms: OpenCollective

added HCPCS and CDT to preferred encounter code sets

a316ef14dafc0372472d33e8ec62ea84431feef6 authored over 8 years ago by Czulada, David S <[email protected]>

Merge pull request #386 from mulcahyk/expected_values_in_qrda_export

9e827235a53cd6d2719b48d50bfe820a8f997b38 authored over 8 years ago by Pete K <[email protected]>

Add the ability to include expected values when exporting from Bonnie

87edd5d069fe7c413ae8cb47f1681996d0c08ccd authored over 8 years ago by mulcahyk <[email protected]>

Merge pull request #396 from projectcypress/r3_1_udpates

Types of PQ need units. non-units in UCUM can be 1 or {word}

f6fff116d80ee9a1b3fa4c1b91c5cb02f187ea95 authored over 8 years ago by Samuel Sayer <[email protected]>

Fix CMS 2016 IG incompatibility in record target

4da1a8498d1fc453972a75c96d69f9197c34bef2 authored over 8 years ago by Tom Strassner <[email protected]>

Merge pull request #395 from projectcypress/missing_valuesets

include valuesets with targetSiteCode, dischargeDisposition, facility…

31b3fe01ccf9f9d486e2d94d2eb8dac3426b69b2 authored over 8 years ago by Samuel Sayer <[email protected]>

Merge pull request #393 from projectcypress/cat1r3export_fixes

Cat1R3 export fixes

74ef06e553e91fce9f015f4ef67749e6d4a9f0a8 authored over 8 years ago by Samuel Sayer <[email protected]>

typo

f2d8ad079262d8d95271efeab90a3c89f0ddd312 authored over 8 years ago by Dylan Hall <[email protected]>

Merge pull request #394 from okeefm/change_bundle_download_location

Changed bundle download location

8b47814f828c6c4cefeef9a0dea2b2ea9f781062 authored over 8 years ago by Samuel Sayer <[email protected]>

Types of PQ need units. non-units in UCUM can be 1 or {word}

83bac2e1b7beaac8ddb2c5b4063e85611d530c96 authored over 8 years ago by Czulada, David S <[email protected]>

include valuesets with targetSiteCode, dischargeDisposition, facilityLocation and medicationRoute

6636756af07bff465b093f258b024ed8f5d3b29d authored over 8 years ago by Czulada, David S <[email protected]>

Changed bundle download location to correspond with the new Cypress demo server URL

04efeebbc9b99d6d8d7a917ff85f1a4ba225fed6 authored over 8 years ago by Michael O'Keefe <[email protected]>

remove problem status and child templates

cfdf323f52008863001e1ae860d788127ed5ad08 authored over 8 years ago by Dylan Hall <[email protected]>

statusCode=new has been removed in r3, replaced with statusCode=active

e0acc52a11c9d70e2ea2034c72a3660ee529637b authored over 8 years ago by Dylan Hall <[email protected]>

Merge pull request #390 from projectcypress/qrda3_1

Qrda3 1

cf257c3fabd2ff96e6e76a28ea9b16647749d22c authored over 8 years ago by Adam M. Holmes <[email protected]>

changes for QRDA R3_1

b4ad8895759c06159ecf1891ab4b7316ecdea852 authored over 8 years ago by Czulada, David S <[email protected]>

Merge pull request #385 from projectcypress/export_provider_taxonomy

add provider taxonomy code, if available, to cat 1 export

8a76e23157f17805426bb330769a8a0459970643 authored over 8 years ago by dczulada <[email protected]>

Merge pull request #388 from okeefm/bump_nokogiri_master

Bumped nokogiri for bundle-audit compliance

62132f5593c2567876c8ace2150664c26a6f0e6e authored over 8 years ago by Samuel Sayer <[email protected]>

Bumped nokogiri and ActiveModel for bundle-audit compliance

e9d3a51994abaf9588338dffc8ea9d8305ebfca4 authored over 8 years ago by Michael O'Keefe <[email protected]>

add provider taxonomy code, if available, to cat 1 export

1c57166087745bd9492705d6031ed5d58e4d28ba authored over 8 years ago by Dylan Hall <[email protected]>

Merge pull request #384 from projectcypress/diagnosis_symptom_templates

Added Diagnosis and Symptom templates for QRDA R3.1 support

80551e5326937769d68dac5b3176ea79b60ce8f9 authored over 8 years ago by dczulada <[email protected]>

Use oid_for_code for sdtc:valueSet, also support R2 HQMF template OIDs

19a6237f251a621bbef440f781e1ed55bfc42c7d authored over 8 years ago by Pete K <[email protected]>

Added Diagnosis and Symptom templates for QRDA R3.1 support

eb014d4e9ca5c595d242a34cad2a9b65c87ce859 authored over 8 years ago by Pete K <[email protected]>

Merge pull request #383 from projectcypress/vs_with_categories

add categories to vs

7dbc71a3fdb559f1260818d8fa94a8397ca6f7e4 authored over 8 years ago by pkmitre <[email protected]>

collect" method call is not needed

d call at the end of this line is needed

3942fca5553e951f51d367a676c94b93c6d9c756 authored over 8 years ago by Czulada <[email protected]>

add categories to vs

bc9c238a4abd0901aca0dfb6a1af8557c640844b authored over 8 years ago by Czulada <[email protected]>

Merge pull request #382 from projectcypress/encounter_princ_diag_qrda_export

Added principal diagnosis qrda export for encounters

875de93a8a5ef97ab21fb288a121552c91ba2052 authored over 8 years ago by dczulada <[email protected]>

Added principal diagnosis QRDA export for encounters

e41dcbbc12ab477ed5ec0893505e991e7bd48ac6 authored over 8 years ago by holmesie <[email protected]>

Merge pull request #381 from projectcypress/harmonize_bump_mongoid

Harmonize bump mongoid with master

4364d4cb69e58b93f0b902e78d7f3f6dc321c44a authored over 8 years ago by Adam M. Holmes <[email protected]>

extract transfer moved to common root encounter_importer

stop time needs to specified in the encapsulating encounter

1cf057c1ae4556a0b7fcaf7af4f5bd4f39cc7fa0 authored over 8 years ago by Czulada <[email protected]>

simplecov configuration moved to .simplecov

55e787b23ad8ceb2b5133ce37b9a80f0bc682c8b authored over 8 years ago by Czulada <[email protected]>

updated minitest

c81e7049ac3b4026f8abd3b0da19ac59f47c882f authored over 8 years ago by Czulada <[email protected]>

simplecov updated to 0.11.2

392c4a84b39076c49e982024774d3f34c71c9c39 authored over 8 years ago by Czulada <[email protected]>

negation extracted for negated medications

fd3d199ded3937ae0102bdfed627155f7a26cba0 authored over 8 years ago by Czulada <[email protected]>

1) Defaults to HQR_EHR if no measures are passed into generator

2) Only creates a QRDA document if a measure is provided.

3) Moved cms_compatibility parameter ...

af7a39090c78e79edf96bd79dadf8c3f9227ba8d authored over 8 years ago by Czulada <[email protected]>

Removed jRuby from .travis.yml, and bumped the Ruby 2.2 version to 2.2.4

f839b10ba91b91d501aa609d8840277214b54994 authored over 8 years ago by Michael O'Keefe <[email protected]>

oops forgot the update to actually call oid_for_code

oid for code was passing in entry.laterality and not entry.severity

19d74a1e104345f4d97c2f452dd8ea3782bb89ab authored over 8 years ago by Czulada <[email protected]>

valueset removed from Patient Characteristic Expired. This valueset does not actually exist.

9863b1dbd25a52774473af3f6e04c3b1bd2bc33b authored over 8 years ago by Czulada <[email protected]>

":value_set_map => vs_map" overloads the value_set_map. This causes unwanted behavior when oid_for_code is called from an entry template.

f2eda7cf8e131593fab9cf0fccb161ff6d2cb492 authored over 8 years ago by Czulada <[email protected]>

Dose has a unique behavior, if it is a "value" it has a "unit." if it is a "scalar" it has "units."

b15dbc40b4e57b8507c8978270dac9192d1b133e authored over 8 years ago by Czulada <[email protected]>

updates to be compliant with CMS IGS

medications were not populating unit

QRDA R3 fixture updated
Patient export should not rely on ...

19cd61824635450795f16fe69000846b2078e731 authored over 8 years ago by Czulada <[email protected]>

import of diagnosis, resolved needed to account for wrapping element

910b7840854f758d92ccc53f06e37082c38c0fa5 authored over 8 years ago by Czulada <[email protected]>

updated communication to include reference

refactored extract_reason

Don't include all Health-Data-Standards:Util module

checking if hash...

1e6fb2235aa36764e7ead2d4f5d714211d5b75bb authored over 8 years ago by Czulada <[email protected]>

Modifications to import of Transfers. Tranfers imported as standalone encounters.

Updated import of patient expired

bc0ba114fd98d1a84134aa773a6d4eb7e7d80f06 authored over 8 years ago by Czulada <[email protected]>

Medication, Administered template also needed nested negation

43f9ec82f83b7d08e88f1652c74303f88e0845d5 authored over 8 years ago by Czulada <[email protected]>

updating bulk importer

a207aabeddb7e661447b3058d8387aa99308c739 authored over 8 years ago by Rob Dingwell <[email protected]>

removing annoying puts stament in EntrytemplateResolver, adding paitent_id method to PatientCacheValue object

8d21dc301db7da2349d0734b1ea89c326b3055e1 authored over 8 years ago by Rob Dingwell <[email protected]>

Merge pull request #380 from projectcypress/occurrence_mapping_fix

Fix for broken occurrence mappings

bae5c24f26674aeab8f70f58be64cd89e11f8759 authored over 8 years ago by edeyoung <[email protected]>

Fix for broken occurrence mappings

24de17c6349df556656c213fdc7ebffd4e3dce15 authored over 8 years ago by holmesie <[email protected]>

Merge pull request #376 from projectcypress/numex_population

Added NUMEX population support

a4f7f9daa3116143dcee919cefbeae41c602db49 authored over 8 years ago by pkmitre <[email protected]>

Added NUMEX population support

ebc1e14c997cccaf913f215b26709d60674d7520 authored over 8 years ago by James Bradley <[email protected]>

Merge pull request #375 from projectcypress/sdc_resolution

Sdc resolution

71e6c9e1ee8da2329ea2389698014703b10dfbfd authored almost 9 years ago by Adam M. Holmes <[email protected]>

fix issue with duplicated specific occurreces... also added in check in the roundtrip test to fail if specific occurrences are duplicated out of the HQMF

d2f8a176e9fd71a8591b8fe810568bd2216e6f42 authored almost 9 years ago by Andre Quina <[email protected]>

check if a source data criteria exists before adding it. This impacts SDC added for variables and for specific occurreces that were duplicates of existing ones. While this does not impact calculation, it does cause a problem with variables since the Bonnie UI displays multiple copies of the same variable if there are duplicates.

9a44c732bf6bfdae5099f0de52e46e05251edf97 authored almost 9 years ago by Andre Quina <[email protected]>

add the source data criteria for variables into the data criteria list

fbdef8af87cfb697a3cbfe50bd51db83e10d8d42 authored almost 9 years ago by Andre Quina <[email protected]>

cleanup and commenting

5e632eb09a65bb38e359e80bac8c3d8223a34ccf authored almost 9 years ago by Andre Quina <[email protected]>

clean up differences

1123cdeb40a4071141926e3a10a9ae70dd4c79a6 authored almost 9 years ago by Andre Quina <[email protected]>

remove pry

22de44dac661fd84eaaf462ddbe30448d039d29d authored almost 9 years ago by Andre Quina <[email protected]>

final sdc fixes

1f03ee30137215abd45199c2e0e1eb86041b3e68 authored almost 9 years ago by Andre Quina <[email protected]>

initial changes to handle source data criteria issues

69fb3b1caad18cac88be2e7cabdb3b39eb5f3baf authored almost 9 years ago by Andre Quina <[email protected]>

fix source data criteria issues

ccabcba9190096d2172f27d5d94f7cc26897f276 authored almost 9 years ago by Andre Quina <[email protected]>

Merge pull request #371 from projectcypress/cms_ig_master

Integrate Cypress changes for CMS IG into master to capture relevant QRDA changes

6e735a3ec3ec1fee7c8fa87a6d397ad3511f8d81 authored almost 9 years ago by pkmitre <[email protected]>

Dose has a unique behavior, if it is a "value" it has a "unit." if it is a "scalar" it has "units."

edcc30e5e4b62a5be91966af60173ef8d0297638 authored almost 9 years ago by Czulada <[email protected]>

CMS compatibility passed to exporter as parameter. Default is false

520482c572135f190c12d2942d4e3a4d97ca3261 authored almost 9 years ago by Czulada <[email protected]>

updates to be compliant with CMS IGS

medications were not populating unit

QRDA R3 fixture updated
Patient export should not rely on ...

c37ccc08f5ec645ddba5c3f400ca76a4e8d5fd63 authored almost 9 years ago by Czulada <[email protected]>

Merge pull request #360 from projectcypress/fix_github_languages

Added a .gitattributes file to set resources/schema and resources/schematron as vendored

7b881dde402260805441ed3258be8110f2c25c14 authored almost 9 years ago by Samuel Sayer <[email protected]>

Merge pull request #368 from projectcypress/merge_r3

Merge QRDA Cat 1 R3 into Master

b6eda6bb4a7b635b063a50f1e5d21a1c3a1d911b authored almost 9 years ago by pkmitre <[email protected]>

1)negation import updated to allow negations without a reason specified

2)communication had been changed from a procedure to communication. test updated

fa1ab1b70d91edde085f8d2652ba0be7719c7b18 authored almost 9 years ago by Czulada <[email protected]>

laterality did not match QRDA IG

e89ab0060ff7284d01b1ebc40ad2bbf144392827 authored almost 9 years ago by Czulada <[email protected]>

strange character issues

b1834d7d81ca9e8a5fc189993409cb2b0251349b authored almost 9 years ago by Czulada <[email protected]>

updated communication to include reference

refactored extract_reason

Don't include all Health-Data-Standards:Util module

checking if hash...

90944470a2f8d6ea70461dbd5ae767b16449e5e7 authored almost 9 years ago by Czulada <[email protected]>

moved communication importer from procedure import

oops, had a commented out pry

communication moved into CDA importer

relative reference for dia...

2e4e410265a515001e076c8513ccf7aed4f21d23 authored almost 9 years ago by Czulada <[email protected]>

negation extracted for negated medications

f4a9cba570f95682c7f82605a42fb36c477775a3 authored almost 9 years ago by Czulada <[email protected]>

Medication, Administered template also needed nested negation

e186b34afba1a5da3e7550346b1e3e78e4ddee3a authored almost 9 years ago by Czulada <[email protected]>

1) Transfers templates added

2) coordiated dose applied to CVX codes (in addititon to RxNorm)

removed nested if statements th...

0519220bc25316b6579f328eb8f6f1879c7120d2 authored almost 9 years ago by Czulada <[email protected]>

importer and exporters for device order not done workaround

6c33ad4d4be3af3a60445c7b11760ad33f7330b6 authored almost 9 years ago by Czulada <[email protected]>

Added address and name info to provider template

a749030bf0fe000e58c994066914b734921ac022 authored almost 9 years ago by Michael O'Keefe <[email protected]>

Added code to export laterality info if present from Diagnosis, Active, and code to import it in the Diagnosis, Active importer

1a38f3f72d6610b5263a97379a5d271ca35d32ce authored almost 9 years ago by Michael O'Keefe <[email protected]>

unit tests failing R2 compatibility not passed for HTML scoop and filter

6e313243b6ac6e3b5bed363af5e12f06806306b2 authored almost 9 years ago by Czulada <[email protected]>

updated to new schematron. "LOINC" statment CONF:1098-7133 relaxed. DischargeDisposition CONF:1098-32377 commented out

9f46e056e86002f99a3d1db0a76485124f3fe0a9 authored almost 9 years ago by Czulada <[email protected]>

removed nested if statements that could never be true

f760b27d6a0a5ae18188018772d40df039ab0759 authored almost 9 years ago by Czulada <[email protected]>

1) Transfers templates added

2) coordiated dose applied to CVX codes (in addititon to RxNorm)

dcfb700099fb2c776770fd9a97fa6dab6321c890 authored almost 9 years ago by Czulada <[email protected]>

template changes to make R3 happy

a37fb48913e6887a1eb78eb41d1f6ac987febe2f authored almost 9 years ago by Czulada <[email protected]>

templates updated to include dose and period where applicable

8b62987843a1d0ceb9630670ed5c3a8d90b07cbc authored almost 9 years ago by Czulada <[email protected]>

Added negation indicators to some templates to allow for negated orders, and added their negation maps to the hqmf-qrda-oids.json map. Also added searching the r2 hqmf-template-oid-map file if you don't get an OID out of the r1 one

f71d5d59a1c06bc0fb1ccd32bebdc96a80b1f68a authored almost 9 years ago by Michael O'Keefe <[email protected]>

Functional Status performed needs to include Procedure Activity templateId

2bd384730c35fd73021697cee232982262030242 authored almost 9 years ago by Czulada <[email protected]>

reason template was being included even if the reason value set is not part of the measures the patient is being exported for.

07908e75c452a7d84caa1a26345338bde354ca4d authored almost 9 years ago by Czulada <[email protected]>

Merge pull request #346 from ewhitley/master

e02221a93d01fcb1b261ec5711860b9acd8d8027 authored almost 9 years ago by Pete K <[email protected]>

Replacing :preferred_code_sets with 'preferred_code_sets' in templates. When using :preferred_code_sets (symbol) instead of 'preferred_code_sets' (string), preferred code set is not found when rendering - which results in incorrect template output.

14132a2ed66bfa338cac3dc052238043d4a53a81 authored almost 9 years ago by Eric Whitley <[email protected]>

Fixing incorrect vocabulary type in template. When calling code_display, value should be SNOMED-CT (not SNOMED). When using SNOMED, template fails to render correctly because preferred code set is not found.

155e8afe0ec7cc5a6fdff0d134cc4bd2df5db224 authored almost 9 years ago by Eric Whitley <[email protected]>

Remove stray "l" after closing observation tag

b99461c542924f0e6546e0d6f9881d0c05fae263 authored almost 9 years ago by ewhitley <[email protected]>

Merge pull request #362 from projectcypress/travisify_bump_mongoid

Travis-ify the bump_mongoid branch Cypress 3 is using

b6c4579cd7d8a271c6ce8bf87ffbdd6585e8cc46 authored almost 9 years ago by Michael O'Keefe <[email protected]>

Travis-ify the bump_mongoid branch Cypress 3 is using

1c4e57967537061d3cd876e1de291b0b008cd4e2 authored almost 9 years ago by Michael O'Keefe <[email protected]>

Added a .gitattributes file to set resources/schema and resources/schematron as a vendored path (excludes it from language statistics, and diffs on github.com). This is useful because the schematrons in resources/schematron are ~50% of HDS's current codebase, so we're getting marked as a KiCad project rather than a Ruby one.

15d0740f887fa484b83a425b01959809f94e50a9 authored almost 9 years ago by Michael O'Keefe <[email protected]>

Merge pull request #356 from projectcypress/mat_format_change

Mat format change

858816505df3b9913c26e7f06a738b39d05e2646 authored almost 9 years ago by pkmitre <[email protected]>

Reflecting change in MAT output for parsing Immunization, Intolerance data criteria

6f13bcbe981c1190bcedf2ba5510a2eb011d6c44 authored almost 9 years ago by holmesie <[email protected]>

Reflecting change in MAT output for parsing Immunization, Allergy data criteria

01c7c84fec1c4d845fb9b4a5b3fd986f63015931 authored almost 9 years ago by holmesie <[email protected]>

Merge pull request #347 from projectcypress/fix_medication_template

Removed extraneous bracket from the Medication, Active template, at t…

445e5b0f1813fdc43360b8bd9332d3d4828cf1fd authored almost 9 years ago by rdingwell <[email protected]>

Merge pull request #351 from projectcypress/2016_schematron

update cat 1 r3 schematron to 2016 version

ef4a060bea178c9608e6bd9dd4acb5d7c6b35ce1 authored almost 9 years ago by rdingwell <[email protected]>

update cat 1 r3 schematron to 2016 version

0d3f967f9929c5e6f08f368fedb5c74ea497b8ed authored almost 9 years ago by Dylan Hall <[email protected]>