github.com/openemr/cqm-parsers commits | Ecosyste.ms: OpenCollective

Merge branch 'develop' of github.com:projectcypress/health-data-standards into develop

8b3ebc3202c6d15ab656ca8688588caf19467711 authored over 11 years ago by Rob Dingwell <[email protected]>

updating templates to confomr to updated qrda cat I errata , schematron rules and MU2 langaugeCode constraints

1dddc4ed676a399c0819f8f7c1c89250629e2233 authored over 11 years ago by Rob Dingwell <[email protected]>

Merge remote-tracking branch 'cy/develop' into develop

Conflicts:
templates/cat3/show.cat3.erb

404e7a81e5a980ff5a13cba5a9a59adda2cf34a4 authored over 11 years ago by Andy Gregorowicz <[email protected]>

Updating the Cat III export code to deal with measures that have multiple population types, like multiple IPPs

82b615daa57e9ef0d7f888fa5b9ae4262d8b9bab authored over 11 years ago by Andy Gregorowicz <[email protected]>

adding null flavoured id element to the supplemental data templkate because the Payer supplumentatl data section needs it and it wont hurt the others.

382342d5f456b587fe7f61b90147868ea0466e38 authored over 11 years ago by Rob Dingwell <[email protected]>

adding some comments to generated xml for cat 3 documents

3cfc3a8618b4950d42e8dd0d8e7b29d78b445adb authored over 11 years ago by Rob Dingwell <[email protected]>

fixing issue where reporting rate and measure data sections where not wrapped by component element. Implementing nullFlavor for unkown supplemental data counts

a7d1152595e9667e6b71471f356c082cbca08b6f authored over 11 years ago by Rob Dingwell <[email protected]>

adding test id as a param to the qrda cat 3 exporter

196a6fa3548ef09fc36df1320d3b460315c2241f authored over 11 years ago by Rob Dingwell <[email protected]>

Hard coding the code system for medication route because Cat I says that it should always be NCI Thesaurus

bfe52b37c895f038a4708e45fa42a594bd8a05f5 authored over 11 years ago by Andy Gregorowicz <[email protected]>

Merge remote-tracking branch 'cy/develop' into develop

96bf825c0e800257898c3e48582960172945dcbc authored over 11 years ago by Andy Gregorowicz <[email protected]>

Merge branch 'cat3' into develop

600c7bf43df784edc61590b5f005b23a1af93b32 authored over 11 years ago by Andy Gregorowicz <[email protected]>

First pass at Cat III export complete

5626bf797068df9a85032f870fd12639cc988421 authored over 11 years ago by Andy Gregorowicz <[email protected]>

merging from github develop branch

7ee9288377142f86c06fcfc3b11ce65628879ba3 authored over 11 years ago by Rob Dingwell <[email protected]>

fixing issues related schema validation. Ensuringthat nullFlavored valueshave a type and that values that are not numbers use the ST type

a0cde4f173d0f8f18e2b7b4724491b7aaa627516 authored over 11 years ago by Rob Dingwell <[email protected]>

Implementing supplemental data for Cat III export

908eb819fe46b960b3f20df740a393525af509b1 authored over 11 years ago by Andy Gregorowicz <[email protected]>

Implementing the export of stratifications

946c5798010d4f6474e0ec4ed7d7468e1842e879 authored over 11 years ago by Andy Gregorowicz <[email protected]>

Merge remote-tracking branch 'cy/develop' into develop

db06500f2b60658c92d0a9e8ac7b07195b7c3c8e authored almost 12 years ago by Andy Gregorowicz <[email protected]>

Merge remote-tracking branch 'mn/develop' into develop

abd2e26a31b4c87da76c1cab23ffee5fdcb6c4ed authored almost 12 years ago by Andy Gregorowicz <[email protected]>

Starting implementation of QRDA Cat III export

9eaf3e13247344fff3ac11a42ff67477548ede5e authored almost 12 years ago by Andy Gregorowicz <[email protected]>

fixed issue in parser where temporal references with = relative timings (i.e., =0 days SBS) were not being parsed correctly

59e96f58bbf2f658057f36ee469c1a6b4a5c4521 authored almost 12 years ago by Andre Quina <[email protected]>

NLM VS_API refactoring

d9cce102bc3c173f9da5fa097ceec444ee3acf3d authored almost 12 years ago by Michael D. Norman, Ph.D <[email protected]>

Now allowing a test id to be passed into the aggregate_measure metod.

a39221fe849e7f334230b1d68f1b98b95383d0e2 authored almost 12 years ago by Andy Gregorowicz <[email protected]>

Adding a model for the query cache and providing the behavior necessary to assemble data for Cat III export

b6ba63d988174493b1647eaecbcde3f153933f88 authored almost 12 years ago by Andy Gregorowicz <[email protected]>

NLM API Effective Date Updates

d5fdeaadb12226c85c998925b89c1c99ce9e29a9 authored almost 12 years ago by Michael D. Norman, Ph.D <[email protected]>

NLM ValueSet API Code Readability Updates

e952990e4b6b9ebcc0d7d45225ebafe2c719e3f8 authored almost 12 years ago by Michael D. Norman, Ph.D <[email protected]>

NLM API Effective dates update

cd2af5bb82d3e164ab38301590fbbfba1dd57806 authored almost 12 years ago by Michael D. Norman, Ph.D <[email protected]>

NLM API Work

f91150abeac0fc876045aea974859bcd774e3e2c authored almost 12 years ago by Michael D. Norman, Ph.D <[email protected]>

Using memoist to memoize entries_for_oid. Cuts Cat I export time in half.

ec5bd3037a5fc713046b39cf844a2b7c2f3920c5 authored almost 12 years ago by Andy Gregorowicz <[email protected]>

Slight refactor that results in a 25% performance boost for Cat I export

42e6e2c9b4ba7092587d3572144810aa8032b4d2 authored almost 12 years ago by Andy Gregorowicz <[email protected]>

add denormalize value set code system name to allow writing NLM responses

340d8b30ab75ae84309d5955de1da0f8234359e9 authored almost 12 years ago by Andre Quina <[email protected]>

changin provider to payer

1fca79c2da91a3271d3ad6b6355ad56b0f5f0baa authored almost 12 years ago by Rob Dingwell <[email protected]>

Removed File Writer on Cat 1 Roundtrip Test

e7a100b7eab05436d5028145142dfb9f53679930 authored almost 12 years ago by Michael D. Norman, Ph.D <[email protected]>

Merge remote-tracking branch 'healt-data-standards_main/develop' into roundtrip

180dddeed94bba899d7c01c8bf297d9fe6de112a authored almost 12 years ago by Michael D. Norman, Ph.D <[email protected]>

Cat 1 Roundtrip Test Allergy, Medical Equipment, Procedure tests added. Export template 2.16.840.1.113883.10.20.24.3.44 fixed to include end time/high time

e1415169ca15f55339e8058b84f5de547a8df3bd authored almost 12 years ago by Michael D. Norman, Ph.D <[email protected]>

Updating the patient expired template to include a reason if it is available

f321b525cc64a201edee4774e62a02c76a46649a authored almost 12 years ago by Andy Gregorowicz <[email protected]>

Added roundtrip tests for medications and conditions. Modified section_importer and condition_importer to keep incorrect CodedResultValue from being added to conditions on import.

ac6d7d82f0142436dbe6500b5ceabfa49f98bbc4 authored almost 12 years ago by Michael D. Norman, Ph.D <[email protected]>

Cat 1 Roundtriptest using stringio and file output

3293f0d818abcf932591e4195935308644fba452 authored almost 12 years ago by Michael D. Norman, Ph.D <[email protected]>

Partial Cleanup of Cat1RoundtripTest

ef5d402e1595b8735ed157dafd059d185a3f335b authored almost 12 years ago by Michael D. Norman <[email protected]>

Added mary_berry.json

6d5cb738d5ccb88411f678bed87bf24c427c1427 authored almost 12 years ago by Michael D. Norman <[email protected]>

Cat1 Roundtrip Test patient Mary Berry JSON created, Cat1RoundtripTest modified to leverage

c68bd3f178f38d8f20a73343b1c625a943449ef1 authored almost 12 years ago by Michael D. Norman <[email protected]>

Cat1 Roundtrip Export-Import Test

fda40558b7991f495613cb3d65b3f6e28997a6ac authored almost 12 years ago by Michael D. Norman <[email protected]>

Updated Cat1RoundtripTest to use Barry Berry's JSON

54c1cafc6e4e4ceb1758f1c8d062ce4811faa18c authored almost 12 years ago by Michael D. Norman <[email protected]>

Latest roundtrip code

a25d432c9606bda301565140e0c30d5ecb01be72 authored almost 12 years ago by Michael D. Norman <[email protected]>

Merge remote-tracking branch 'cy/develop' into develop

14c433868b17e2df0d3b375b47752986ee782407 authored almost 12 years ago by Andy Gregorowicz <[email protected]>

Fixing an issue where we were not converting seconds since the epoch to an HL7 timestamp. Closes CYPRESS-22

4e6f79606e2a00e9b4912f69de4ba84437bdf66b authored almost 12 years ago by Andy Gregorowicz <[email protected]>

Merge branch 'develop' of github.com:projectcypress/health-data-standards into develop

7eb13554c48769ecc28bdb5646815f044399e69c authored almost 12 years ago by Rob Dingwell <[email protected]>

adding hl7 schemas and schema validation of cat I export. Modified cat1 result template to only render unti attribut if there is an actiual unit value not just an empty string. updated template _2.16.840.1.113883.10.20.24.3.76.cat1.erb to deal with elements that were out of order

eb3748545b2401dfca1787967f5908d70b7806bc authored almost 12 years ago by Rob Dingwell <[email protected]>

Pushing latest to feature branch

87342360acb481b7048136f90c10913c4b540f67 authored almost 12 years ago by Michael D. Norman <[email protected]>

Moving functionality from the Measure model in popHealth over into the model here.

ef5045b91fc03fc48e9cedff1a31ff5402dd1a75 authored almost 12 years ago by Andy Gregorowicz <[email protected]>

tabs to spaces

709abdb0860f7a8fbb6b7cda04ab3b0ec5cb4cdf authored almost 12 years ago by Andy Gregorowicz <[email protected]>

Removing a pry statement

e5f3e2db3c4911161a9318e423e2d63f14c0b8e0 authored almost 12 years ago by Andy Gregorowicz <[email protected]>

Merge remote-tracking branch 'ah/develop' into develop

684cc5f652e78c40dae8ab729027cd84171e0a9d authored almost 12 years ago by Andy Gregorowicz <[email protected]>

Added OID to Barry Berry's colonoscopy

a76f932c344c6d5f8e90d687e161df389f2d9788 authored almost 12 years ago by Michael D. Norman, Ph.D <[email protected]>

updating README with additional information about libs that were added to HDS

c3d50f2e9659c1ec948814bbdbdcfb15ae454fd8 authored almost 12 years ago by Rob Dingwell <[email protected]>

adding QRDA text to test Continuous Integration scripts

cb38721b97186f238c092e7c7b029363cba45e42 authored almost 12 years ago by Rob Dingwell <[email protected]>

moved xls value set parser out into bonnie

99a248ab532e5a3df5b72bee955f805e598020d0 authored almost 12 years ago by Andre Quina <[email protected]>

refactored cat1 importer to pass ABC complexity test

34a39a60d5e209705015ec5f65fd426041a7987b authored almost 12 years ago by Andrew Hubley <[email protected]>

Merge branch 'develop' of http://github.com/projectcypress/health-data-standards into develop

4efe9964c9dbc7a5c16ac3a530592762d43f8cea authored almost 12 years ago by Andrew Hubley <[email protected]>

New test module for roundtrip created

391db060a01d61580484250fae8fb9ab2b1d27c7 authored almost 12 years ago by Michael D. Norman, Ph.D <[email protected]>

add template for negated medication discharge

5fee0431bbfbdcde4b24827bd9aa0194b5bbc0a3 authored almost 12 years ago by Andre Quina <[email protected]>

updated lab result importer to add end time

64ed96e207ea7a79a6756000d01bcf7958a9cc7f authored almost 12 years ago by Andrew Hubley <[email protected]>

added xlsx

930c1278341623eef1d85079a576b4439d81fe66 authored almost 12 years ago by Andre Quina <[email protected]>

Updating C32 and CCDA templates to use the Cypress OID, 2.16.840.1.113883.19.5, to uniquely ID our documents.

17c6bc32506917d8a353ac8482ef222da151166d authored almost 12 years ago by Adam Goldstein <[email protected]>

Now importing coded result values

ad41cf05b74a822a9da992370677f0e9509c2234 authored almost 12 years ago by Andy Gregorowicz <[email protected]>

Making sure we extract the id properly for conditions

9a4b841dbea4248f0844e01400c89d8befb315e6 authored almost 12 years ago by Andy Gregorowicz <[email protected]>

Moving medication active to its own importer where we can calculate cumulative medication duration

c7f859a8f1fdfdb58276bb20d19a8144d009984e authored almost 12 years ago by Andy Gregorowicz <[email protected]>

Removing a method that only called super

e9c3f9e36b249bc88032fc7b2fa717f58a64c235 authored almost 12 years ago by Andy Gregorowicz <[email protected]>

Fixed a copy/paste error in the comment and removing another method that just calls super.

ede5e185bfb6c07aafb4dc8bb099f4320c33da39 authored almost 12 years ago by Andy Gregorowicz <[email protected]>

Getting rid of some method overrides that just called super

2383b484911b91a83460a46e43924e7f6eb3b613 authored almost 12 years ago by Andy Gregorowicz <[email protected]>

Fixing a bug in the Cat I importer where we were setting every patint to expired.

6d8426ab969c7824db3479895f64c27373acadcc authored almost 12 years ago by Andy Gregorowicz <[email protected]>

Adding an end time to risk category assessment

95c43bc773c2d7d6a4dbfcd7bde429535cdb525e authored almost 12 years ago by Andy Gregorowicz <[email protected]>

Removing this method since it wasn't doing anything

33decc430704d89cbf91e1a62878a705e62dc207 authored almost 12 years ago by Andy Gregorowicz <[email protected]>

Merge remote-tracking branch 'cy/develop' into develop

06fc080edfe81a70ed6061c4a0d5c19127805bf8 authored almost 12 years ago by Andy Gregorowicz <[email protected]>

Switching Record so that the social history section is now stored under the property "socialhistories" instead of "social_history". The patientapi uses "socialhistories". Code in HDS is conflicted about it. There are two separate JSON fictures that had it in two different places. Swithcing the property to work with the patientapi. Aliasing the methods so that legacy code can will still work. This needs some serious clean up :worried:

b12dba36047eda06d40a048b3abb95e189d6f067 authored almost 12 years ago by Andy Gregorowicz <[email protected]>

Switching the importer over to use time instead of start time. Orders are point in time events in QRDA, and storing it this way in the model allows the patient api to work with it properly.

93dfb8a8375350a481cf7c5a57ce22c5b7ac4c4e authored almost 12 years ago by Andy Gregorowicz <[email protected]>

updated bundle import tests

dff42b425752c7d3160032d07670346db32451b0 authored almost 12 years ago by Andre Quina <[email protected]>

updated bundle loading to get rid of regular expressions and to provide more feedback during the load process

156f1cebbc909e7e81904f266657ffd8161bda2d authored almost 12 years ago by Andre Quina <[email protected]>

Adding an end time to lab results

d33f32aa08bf785887101f6147b013a346168cf9 authored almost 12 years ago by Andy Gregorowicz <[email protected]>

Outputting the end time for the communication

7a88cd76aa080e8a14365ca4a4f99325d1ac2eb1 authored almost 12 years ago by Andy Gregorowicz <[email protected]>

Patient_importer .compact fix

7c7f168e0f4b19b36e4672b34e8f1e331b005e1f authored almost 12 years ago by Michael D. Norman <[email protected]>

Merge remote-tracking branch 'mike/develop' into develop

c105fd333be0765352314c15e5ee26d86a4b0653 authored almost 12 years ago by Andy Gregorowicz <[email protected]>

Making sure that the timestamp is in HL7 format

1cfb18e63a79753c625ab6a706d66e0bdc828718 authored almost 12 years ago by Andy Gregorowicz <[email protected]>

Merge remote-tracking branch 'andy/develop' into develop

9591c216db85242998f8f87ebb8b44dfd1e15f94 authored almost 12 years ago by Michael D. Norman <[email protected]>

Complete Lab Result Importer implementation and slight fix to LabOrderImporterTest

74bcae2d3af471cba72cd4d1adccb138e9709480 authored almost 12 years ago by Michael D. Norman <[email protected]>

Removing the compact statements

8bf69dca9493d524c70b969b4e1c969b2307d29e authored almost 12 years ago by Andy Gregorowicz <[email protected]>

Merge remote-tracking branch 'ah/develop' into develop

00213dc225eddc24fd5d778b7487d35c62fc3400 authored almost 12 years ago by Andy Gregorowicz <[email protected]>

added encounter discharge time import, procedure performed ordinality import w/relevant tests, proc performed importer added to h-d-s.rb, fixed html export to load value sets on call instead of on load

92c32de1c03bebf7ae0e101f0217a7ddf0438ff9 authored almost 12 years ago by Andrew Hubley <[email protected]>

Merge branch 'develop' of http://github.com/projectcypress/health-data-standards into develop

3c086ebf04752662b8b39d470a6f188736251de4 authored almost 12 years ago by Andrew Hubley <[email protected]>

Rolling deduping into the Cat I importer

0e6802fa068d1e614dc18fce95399fa845e830c6 authored almost 12 years ago by Andy Gregorowicz <[email protected]>

Self modifying uniq does not seem to work past the save on mongoid. Reassigning the relationship does the trick.

8112b8d858d50dd231bd64480c7518afd69f33fd authored almost 12 years ago by Andy Gregorowicz <[email protected]>

Always override hash when you override ==. I should have known better.

f04c3c96d83e87698eafbe4d722e4f6804a3a427 authored almost 12 years ago by Andy Gregorowicz <[email protected]>

Now have deduping code working in Record

3e9a9fe1776fe006dd18ea266bac25d681f4cb9e authored almost 12 years ago by Andy Gregorowicz <[email protected]>

Now extracting the id of a CDA entry

1cfda341321220f6612704bbd18e92aa38c2b66d authored almost 12 years ago by Andy Gregorowicz <[email protected]>

moped 1.4.3 update

Merge remote-tracking branch 'health-data-standards_main/develop' into develop

3a90c70e23ba94ecb0fd6a6419e5d7a51f23857d authored almost 12 years ago by Michael D. Norman <[email protected]>

Fix for clearing out system.js on moped 1.4.3

2c750043255af0beaf465e1733517faad363e285 authored almost 12 years ago by Andy Gregorowicz <[email protected]>

Tabs to spaces

91536f7ff2c2b1c43a21e9984bf6c432ad230fd4 authored almost 12 years ago by Andy Gregorowicz <[email protected]>

Update to main

Merge remote-tracking branch 'health-data-standards_main/develop' into develop

5a369f63f1203f94eeb31aea560ce8cd8cfb6c89 authored almost 12 years ago by Michael D. Norman <[email protected]>

Merge remote-tracking branch 'ah/develop' into develop

d63e5256a3479d68950388342e26aaf8ac24fe66 authored almost 12 years ago by Andy Gregorowicz <[email protected]>

updated version

f579fada4817708bf1e4a5e5e151910a45d54b75 authored almost 12 years ago by Andre Quina <[email protected]>

Merge branch 'develop'

8396a313f95f8069917617bd347c0a1c5ce3dd3b authored almost 12 years ago by Andy Gregorowicz <[email protected]>