github.com/BioJulia/PopGen.jl_archive commits

Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

26cc70acd248b566a9d25e5d46746cda7486414e authored over 4 years ago by jdselwyn <[email protected]>

Update ProbabilityStates.jl

81c1b0106a31b202a0c9b7f4075468f3fbc440e9 authored over 4 years ago by jdselwyn <[email protected]>

more fixes

bb86fd05b93ab239e429a5e93ba243e765cbe5de authored over 4 years ago by Pavel Dimens <[email protected]>

more fixes

6a767db151ebd8dc429d1967f212ddef6ecf7582 authored over 4 years ago by Pavel Dimens <[email protected]>

fixes

010afc40f898a51fc6c2589139e145e71283a16a authored over 4 years ago by Pavel Dimens <[email protected]>

add experimental probability states

8423fdeca88d12bffd039479e8bb092da7c6b8a5 authored over 4 years ago by Pavel Dimens <[email protected]>

add inbreeding toggle

526b25b61cfc9b812786a58253d3b71ca694110b authored over 4 years ago by Pavel Dimens <[email protected]>

Update RelatednessLikelihood.jl

c18b8396d33206106b80a5768fd320ce8e031779 authored over 4 years ago by jdselwyn <[email protected]>

Update RelatednessLikelihood.jl

a5b3ffc841a4c5040a2540098fbdd499cc2eee40 authored over 4 years ago by jdselwyn <[email protected]>

Update RelatednessLikelihood.jl

7a9ac057bd3f373f5f3ed17177e0ec37be46be75 authored over 4 years ago by jdselwyn <[email protected]>

likelihoodRelatedness

6e29798aa9528015331e56665684e2cb7504dd0b authored over 4 years ago by jdselwyn <[email protected]>

add quicker(?) bootstrap relatedness methods

f3844c682cc124c1184fc73d282db95774865db1 authored over 4 years ago by Pavel Dimens <[email protected]>

change relatedness/pw_iden indexing methods

1044fb56029bf88df5ab6436521ef40932bc4888 authored over 4 years ago by Pavel Dimens <[email protected]>

method using groupeddf

5da3701f82570a5311754c90f36d3aa1174b9719 authored over 4 years ago by Pavel Dimens <[email protected]>

set snp thresh to 100

73205e36be8aaa35ce6c7c255f11145ee85b1f6a authored over 4 years ago by Pavel Dimens <[email protected]>

add ignorerepeated = true to genepop reader

1b48a7c30388233f9b7c8a9f7266a1f1e62fec8b authored over 4 years ago by Pavel Dimens <[email protected]>

Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

4f11effea8d247da1b2aa3994c85e7fbc1a54084 authored over 4 years ago by Pavel Dimens <[email protected]>

add phase and matrix methods

c3cdcc5f8ca9b92b77f4de2e0d9bd0686bc36bff authored over 4 years ago by Pavel Dimens <[email protected]>

Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

dd53acf657d460596ec7a59cf05703e4a329e686 authored over 4 years ago by jdselwyn <[email protected]>

Update RelatednessMoments.jl

b9b57982230fbbf39c2c32223214a2f4e356ff1a authored over 4 years ago by jdselwyn <[email protected]>

rm views

e5fca9143598954cb3869dab05495d2582eb8270 authored over 4 years ago by Pavel Dimens <[email protected]>

Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

821d4151419481ddad5b9d2dce58fde2ef8522f4 authored over 4 years ago by Pavel Dimens <[email protected]>

simplify a_wang

1203f8f4bc316c651c4aef4f728e28713c35e8de authored over 4 years ago by Pavel Dimens <[email protected]>

Update RelatednessMoments.jl

06d250fba8c08f17d922104fefa90d8ed746d832 authored over 4 years ago by jdselwyn <[email protected]>

fix loiselle

434be4e570d257a8e8e4e957264c98e121b3f0f3 authored over 4 years ago by Pavel Dimens <[email protected]>

rearrange relatedness methods alphabetically

8477ec25abadb31ad30c374082c8e2e0bf4e2135 authored over 4 years ago by Pavel Dimens <[email protected]>

fix typo in drop_monomorphic!

b96e95b863909fced4bbb482cbcde89982b10930 authored over 4 years ago by Pavel Dimens <[email protected]>

fix removal of monomorphic loci in gulfsharks

87997100edd784f806ac5376902d583cae8cf34f authored over 4 years ago by Pavel Dimens <[email protected]>

Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

08fcab3c362c726a04de0dd559d4a40273a9735e authored over 4 years ago by jdselwyn <[email protected]>

Update RelatednessMoments.jl

5e695c3c7dc99038507821eb8d406d0a39497469 authored over 4 years ago by jdselwyn <[email protected]>

Update Utils.jl

e2632896976f440a5b506afd0a17d4353cba82b3 authored over 4 years ago by Pavel V. Dimens <[email protected]>

Update .gitignore

3643d2984de1cf9a94cf80289cd70adf51b6c379 authored over 4 years ago by jdselwyn <[email protected]>

Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

9d13708d2813045393d35f5d3bf942e87e0bf9b2 authored over 4 years ago by Pavel Dimens <[email protected]>

fix bootstrap

4c1fb60c18478a314366122c4cfc27fcdb588c92 authored over 4 years ago by Pavel Dimens <[email protected]>

add new methods

6efec56f1c04b4ceaafed955cd9aa857febeb1c4 authored over 4 years ago by Pavel Dimens <[email protected]>

add nonmissing method

a33f25abf2c7463be0b3e150cb0dc7a8308954ac authored over 4 years ago by Pavel Dimens <[email protected]>

rename locus => genotypes

d561e8ffd871aaaa575619cec83e41823e835a07 authored over 4 years ago by Pavel Dimens <[email protected]>

drop_monomoprhic and light touchups

30bbf150494b26cdb32a752ef856c6c901e92115 authored over 4 years ago by Pavel Dimens <[email protected]>

Update RelatednessMoments.jl

24c10eabe2cc546d1c8f1d1e8eb0e322c6d8b9a5 authored over 4 years ago by Pavel V. Dimens <[email protected]>

consolidate lat/long coords

0f1735d245f5f4a32522156c3f9bfe98aa6d4c8f authored over 4 years ago by Pavel Dimens <[email protected]>

simplify methods and include name checks

2c9d281e0d039e7e84f98d25cb706636ccd81ba5 authored over 4 years ago by Pavel Dimens <[email protected]>

make progress bar blue

a482cbc7adfe3e294a509494d7b96b38a7512e9c authored over 4 years ago by Pavel Dimens <[email protected]>

add drop_monomorphic methods and integrate

e3cb0567c535f1d02863e2a4f6e7af1e3314717d authored over 4 years ago by Pavel Dimens <[email protected]>

tweaks

4762a640340bf139c9e8ee8d61560c631bb658b2 authored over 4 years ago by Pavel Dimens <[email protected]>

add progressmeter

c9d2cc68a3ae13d311bbe333516aef21c7415b09 authored over 4 years ago by Pavel Dimens <[email protected]>

fix relatedness type signatures

15cacc40e5890a15f11820988cacfe0d0d594155 authored over 4 years ago by Pavel Dimens <[email protected]>

docstring touchup

520b006546e9c3f719294ad18d64d765dbf3f871 authored over 4 years ago by Pavel Dimens <[email protected]>

create docstring for relatedness methods

5326bfd5fee6ce0902ca86c8392563bb7c021ee5 authored over 4 years ago by Pavel Dimens <[email protected]>

docstring fix

5a00caebd1c4e8727c057b937c6d99c3e562890a authored over 4 years ago by Pavel Dimens <[email protected]>

add wrapper and exports

90f6e7bbdbec44b98bb76281af2711d660db7431 authored over 4 years ago by Pavel Dimens <[email protected]>

add methods for specific individuals

2d55e2a6a6d37df4997d1c7404161ef2804339bf authored over 4 years ago by Pavel Dimens <[email protected]>

Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

746e8d5259ee9439656faff992f753ab65461daa authored over 4 years ago by Pavel Dimens <[email protected]>

update

e866e1305b9060f057be65a0cbc1546bcb2bd438 authored over 4 years ago by Pavel Dimens <[email protected]>

Update RelatednessMoments.jl

58a318998959702c703e18a74c7b65ee7e13c830 authored over 4 years ago by jdselwyn <[email protected]>

Update RelatednessMoments.jl

58377270ddc7919952ad5af151c4c64883cfbc96 authored over 4 years ago by jdselwyn <[email protected]>

Update RelatednessMoments.jl

2c454410c536c8491480ccc78b12b8b3f1636b84 authored over 4 years ago by jdselwyn <[email protected]>

Update RelatednessMoments.jl

c4ff7341c92d6fb431aa35f9c01a1102bc52a924 authored over 4 years ago by jdselwyn <[email protected]>

Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

14619c327196453031c2873b015ccfb66b850970 authored over 4 years ago by Pavel Dimens <[email protected]>

iterate column creation for bootstraps

b8fb04ed78e24ad6dbd5011b74b527944cb1661c authored over 4 years ago by Pavel Dimens <[email protected]>

Update RelatednessMoments.jl

037f0733a52d7869bf4e3eb2b82bfa47961f2192 authored over 4 years ago by jdselwyn <[email protected]>

Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

e38ea209ae0215f5e86b04662dec8b30bd8e9264 authored over 4 years ago by Pavel Dimens <[email protected]>

tweaks

bca1783f59bd9c95fcffca9e18e6f7923412cc7d authored over 4 years ago by Pavel Dimens <[email protected]>

Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

85bbcb6fd7e0ed2c396f92c2ab3919fc7e47104c authored over 4 years ago by jdselwyn <[email protected]>

Update RelatednessMoments.jl

c79ee8a27fe5396f541fa09e6e29cf9493ebc6f0 authored over 4 years ago by jdselwyn <[email protected]>

Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

ddf65fb48f9d95299aa864880abbfc0abf952679 authored over 4 years ago by Pavel Dimens <[email protected]>

add multi-method tolerance

16c8cf6276d3f33d3825df69cd2f08d8aeac0b30 authored over 4 years ago by Pavel Dimens <[email protected]>

Update RelatednessMoments.jl

8e8b0f38a5a967e51e32b7218739b71b47edef21 authored over 4 years ago by jdselwyn <[email protected]>

Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

a30bd77a5bddfafba42f7e0abbd7a26cdc2421fe authored over 4 years ago by jdselwyn <[email protected]>

Update RelatednessMoments.jl

bdea5d0c40e551d6ca0845d0808e0a29ff177c20 authored over 4 years ago by jdselwyn <[email protected]>

fixes

1a59dff063115241001c46ce5ed3af3e9b91d36c authored over 4 years ago by Pavel Dimens <[email protected]>

remove redundant geno call

64e2dce0781753b559f8fc12349e848d94dbecbf authored over 4 years ago by Pavel Dimens <[email protected]>

Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

70cb0123842ef917361bb536f04c423fdcf87226 authored over 4 years ago by Pavel Dimens <[email protected]>

update docstrings signatures

b82a3b244476bf8b173ba10940b0179c54d3c9e8 authored over 4 years ago by Pavel Dimens <[email protected]>

Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

f946e0b291b0479435e58cc04e8a8acb3b3704da authored over 4 years ago by jdselwyn <[email protected]>

Update RelatednessMoments.jl

44a618e192e0b830d9c05e8388fa4dd94fa641e8 authored over 4 years ago by jdselwyn <[email protected]>

Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

0f1b061aaa8d78a0f3e170ee43b0ff6d367e36e2 authored over 4 years ago by Pavel Dimens <[email protected]>

updated function signatures

dadf5a40e91c0dbfea272a0a0e1d44cb5a86c212 authored over 4 years ago by Pavel Dimens <[email protected]>

Update RelatednessMoments.jl

c49b56b78d6dfe74afcac4ed89139d6b46470021 authored over 4 years ago by jdselwyn <[email protected]>

Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

8555f0bc84101d6a65bd9eb1596e8e4b828be284 authored over 4 years ago by jdselwyn <[email protected]>

Update RelatednessMoments.jl

651c7afdc1942e598af8fcb711f8c875f3fd09ea authored over 4 years ago by jdselwyn <[email protected]>

update vector allocations

77c5fd5804647f947ae558444ce51facef69b734 authored over 4 years ago by Pavel Dimens <[email protected]>

update vector allocation

ca8b62104e05fcfb0c11551453438a7550f26835 authored over 4 years ago by Pavel Dimens <[email protected]>

Update RelatednessMoments.jl

f74df3ba381402e3849e359a4115ae944f2cdd95 authored over 4 years ago by jdselwyn <[email protected]>

Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

84093174297665eba8817645cafaad4eb47bd546 authored over 4 years ago by jdselwyn <[email protected]>

Update RelatednessMoments.jl

3806d6d8933a2bc6ca4417d76c4fa039ca15e51c authored over 4 years ago by jdselwyn <[email protected]>

minor allocation tweaks

726f54b710de6db95fc2292503a3629e4e7d6256 authored over 4 years ago by Pavel Dimens <[email protected]>

minor tweaks

de0cdd6622fbd84fd68155aa51b26fa60469d714 authored over 4 years ago by Pavel Dimens <[email protected]>

Update RelatednessMoments.jl

100ccb0a5ae0278fee4cc30f05a59effc3f47e04 authored over 4 years ago by jdselwyn <[email protected]>

Update RelatednessMoments.jl

5928eb1f6a59d3396d14d19100fcc2a52a854a40 authored over 4 years ago by jdselwyn <[email protected]>

Update RelatednessMoments.jl

ad977cbd8f605a108c0dd0fe46bdea71e31ba685 authored over 4 years ago by jdselwyn <[email protected]>

Update RelatednessMoments.jl

b64dfd72c2c9640b9fd86db674397a44804a82c7 authored over 4 years ago by jdselwyn <[email protected]>

Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

f5849d1f70826f3e377d006d4a4892a9c7f5fe76 authored over 4 years ago by Pavel Dimens <[email protected]>

update matrix methods

a3dcb114f228d9c1580638f62158bfda220567c5 authored over 4 years ago by Pavel Dimens <[email protected]>

Update RelatednessMoments.jl

b2190f76cf927cc94d1971e7589d670ce7419535 authored over 4 years ago by jdselwyn <[email protected]>

Update PairwiseRelatedness.jl

36407602111dbf6d033fd11784f2375177001d44 authored over 4 years ago by jdselwyn <[email protected]>

Update RelatednessMoments.jl

ef4bf2e16fc824603ae3138e271207a571494fc1 authored over 4 years ago by jdselwyn <[email protected]>

Update RelatednessMoments.jl

ddc4fd85b1135b76159fbcc6b7f625c6340ef653 authored over 4 years ago by jdselwyn <[email protected]>

optimize multitest_missing, add pairwise_pairs

2c8634676f1132323d156cf803d31f1e1dca8f87 authored over 4 years ago by Pavel Dimens <[email protected]>

Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

6714ee185b5bf14a4531236fce08754740bd1b0f authored over 4 years ago by Pavel Dimens <[email protected]>

add reduce components

317922fc84d1430c13afbe392541c359e3097c28 authored over 4 years ago by Pavel Dimens <[email protected]>

Ecosyste.ms: OpenCollective

github.com/BioJulia/PopGen.jl_archive