github.com/BioJulia/XAM.jl commits | Ecosyste.ms: OpenCollective

Merge branch 'master' into develop

af675a237162bb5781c223ac935f7fff98f8b53b authored almost 5 years ago

Merge branch 'hotfix/memory'

0e0908f9852a2c1c3dc6d1214f993e3e364aeb73 authored almost 5 years ago

Ensure fields are empty

3e1a8023721531f2cb64de9db1bb40234d757733 authored almost 5 years ago

Increment version

89d7e94f77c449568438fb545cd4415f8737efb5 authored almost 5 years ago

Use unsafe copy

aec919c713b11cde218c92818a8dad4f448b6169 authored almost 5 years ago

Merge branch 'hotfix/header'

6ae1180cfa1c9fc822f0a574ef825eecf3d5373b authored almost 5 years ago

Merge branch 'master' into develop

429f69d84becac6411d84b5b1c1536be8741d934 authored almost 5 years ago

Correct header parsing

d0e2560ec4ba5f86aee9f3285304a9f9c16ec3fc authored almost 5 years ago

Equality comparators

e69c6de5867c94f9a2af5e1df2bdf064896eecdc authored almost 5 years ago

Check header in roundtrip

f6846edfb1eb4da1346756a7a73cd36b4fb2b4a0 authored almost 5 years ago

Use broadcast

cc2af1976bf0199b9da3f6ba0417285c7e8089da authored almost 5 years ago

Use collect

08e253c297a82ecfdb598c01b7e037c3657f3392 authored almost 5 years ago

Correct link

955cf8fbe2a46fcabea378eb596297599e0efc41 authored almost 5 years ago

Increment version

031751f6b375cad59fc02c8550bbb599ce390666 authored almost 5 years ago

Merge branch 'release/v0.2.0'

c1397548450ebc373bc58e1fa91b862bbf97c4e9 authored almost 5 years ago

Merge branch 'master' into develop

8279f545f5d9c6b575fb7f91c405cfbb776a0f22 authored almost 5 years ago

Increment version

8702799593818ceaad2817a338e312a1b77d936b authored almost 5 years ago

Merge branch 'feature/transcodingstreams' into develop

2aaab4d9ab53a1740b852e420ff8f42e6e7050e7 authored almost 5 years ago

Migrate from BufferedStreams to TranscodingStreams

de56faf0667078ff20bb17747f77b0dd422af2d9 authored almost 5 years ago

Quick fix for BioCore.Ragel.State

This fix is likely to be replaced when migrating to TranscodingStreams.

c59a1576755f109e989545e2510a433487b4ec3a authored almost 5 years ago

Group Automa into readrecord.jl

e63ce2e3986ada38e67f4e0b5477d8e541983299 authored almost 5 years ago

Move isinteractive into machine

6cd89aba08cca53cc6888f6109edb7119907438e authored almost 5 years ago

Pipe into eval

892ad0d7dc8578fae4f9c24c4624561e5b8cfd54 authored almost 5 years ago

Quick fix for BioCore.RecordHelper: unsafe_parse_decimal

2cad552f6308b28cd7a99aa3584da98716019bc4 authored almost 5 years ago

Migrate to BioGenerics

Basic find and replace.

c4f3c4b0df70264cfba627263f9f7fb74c51666d authored almost 5 years ago

Align emission symbols for TranscodingStreams

12db2c4ea84c1ba045f49ae2cbac7f6b518fe583 authored almost 5 years ago

Quick fix for BioGenerics.ReaderHelper functions

This fix is likely to be replaced when migrating to TranscodingStreams.

365f7922fae84beea86a350e35887f3c54d8df18 authored almost 5 years ago

Preallocate

b0069d6f27e19ab81f03024f56273c8897e1afdd authored almost 5 years ago

Use accessor functions

e8ad60b086d7a355718d0f4cf6a33a3bb4fd9a19 authored almost 5 years ago

Flatten elseif

789cccbaff4c0a58fa6418c3ba0e90ce794114e7 authored almost 5 years ago

Flatten returns

ef99c703170e54e2e9873c13b47f8d46325fef25 authored almost 5 years ago

Merge branch 'master' into develop

7a4d6d143d449ce458bed3e1f2eabf4b7f98a40d authored almost 5 years ago

Merge branch 'hotfix/SAM'

5aca5f00111b5e220f637534d487485c308624f7 authored almost 5 years ago

Flatten

f272b410315c718bfbf76fecc82be37d07b91700 authored almost 5 years ago

:white_check_mark: Enhanced unit test for rightposition (#37)

Added additional tests for SAM.Record and BAM.Record for `rightposition` (and implicitly...

6a33ac06a7a325de347950b8bb6a8f5beec782bb authored almost 5 years ago

Increment version

6f03bef623cc52c7ce198c5b15e48a4d564b4715 authored almost 5 years ago

:bug: Fix SAM.alignlength(record::Record)::Int (#37)

Fixes issue #37 by re-initializing `len` in `SAM.alignlength`.

8d14563f9d77cb0996ce6ab7839dc29d932e238f authored almost 5 years ago

Merge branch 'master' into develop

406d290b13053b7c27a72301d63b136cab28a654 authored almost 5 years ago

Merge branch 'release/v0.1.0'

109f25bd52e71ce68fba7a355f8942170f4396fe authored almost 5 years ago

Update project status

085a724b4fc06564abe66352f81b1248500f1189 authored almost 5 years ago

Documentation

- API autodocs.
- Inline links for documenter.
- Logo.
- Badges.

1bcd7c344cfc5e031e11075e4ea81702d3c4fd56 authored almost 5 years ago

Add documentation workflow

bf835d9ff06609bdb554defc1c4f9115709598fe authored almost 5 years ago

Documentation roundup

30a9911e58fc778509051472572a55671dc79ac7 authored almost 5 years ago

Add TagBot workflow

4b0a8a6644bd456104b4e4d3e45a0e1f24940fdf authored almost 5 years ago

Add funding

514e2c901d361f6b1815bf0777426a9c181a8c99 authored almost 5 years ago

Use FormatSpecimens

2df146b8fc4578e9631def931bb6441575603b13 authored almost 5 years ago

Minimal code adjustments for working separation

- Update to use GenomicFeatures v2.
- BioAlignments v2.
- BioSequences v2.
- Indexes v0.1.

1a3c986152c024111254acbd10dd60b19135d5b3 authored almost 5 years ago

Naive code roundup

7a56931b90a17986631e4b6c9373845a9a02109d authored almost 5 years ago

Continuous Integration

282d80a758d2178579fd822c631816aea7eca86c authored almost 5 years ago

Add .github templates

78d2329f708c2b1917aa9d393b27a31b11f65aee authored almost 5 years ago

CompatHelper workflow

b2ec34047414eca35d131dd506ba8e1ca33c750c authored almost 5 years ago

Add original authors

17ea000940ce70bdd05785b48e29674a7727371c authored almost 5 years ago

Generated files

07c0f925e624ede0068951e6e915a55aabf01581 authored about 5 years ago

Brief description

c8d7ea0524b7a48a1152c7dad54888c3f4607ca4 authored about 5 years ago

Initial commit

a8133f431608b36fa0574e3ab2d392900f5d5a79 authored about 5 years ago