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github.com/BioJulia/PopGen.jl

Population Genetics in Julia
https://github.com/BioJulia/PopGen.jl

add new methods

6efec56f1c04b4ceaafed955cd9aa857febeb1c4 authored over 4 years ago by Pavel Dimens <[email protected]>
add nonmissing method

a33f25abf2c7463be0b3e150cb0dc7a8308954ac authored over 4 years ago by Pavel Dimens <[email protected]>
rename locus => genotypes

d561e8ffd871aaaa575619cec83e41823e835a07 authored over 4 years ago by Pavel Dimens <[email protected]>
drop_monomoprhic and light touchups

30bbf150494b26cdb32a752ef856c6c901e92115 authored over 4 years ago by Pavel Dimens <[email protected]>
Update RelatednessMoments.jl

24c10eabe2cc546d1c8f1d1e8eb0e322c6d8b9a5 authored over 4 years ago by Pavel V. Dimens <[email protected]>
consolidate lat/long coords

0f1735d245f5f4a32522156c3f9bfe98aa6d4c8f authored over 4 years ago by Pavel Dimens <[email protected]>
simplify methods and include name checks

2c9d281e0d039e7e84f98d25cb706636ccd81ba5 authored over 4 years ago by Pavel Dimens <[email protected]>
make progress bar blue

a482cbc7adfe3e294a509494d7b96b38a7512e9c authored over 4 years ago by Pavel Dimens <[email protected]>
add drop_monomorphic methods and integrate

e3cb0567c535f1d02863e2a4f6e7af1e3314717d authored over 4 years ago by Pavel Dimens <[email protected]>
tweaks

4762a640340bf139c9e8ee8d61560c631bb658b2 authored over 4 years ago by Pavel Dimens <[email protected]>
add progressmeter

c9d2cc68a3ae13d311bbe333516aef21c7415b09 authored over 4 years ago by Pavel Dimens <[email protected]>
fix relatedness type signatures

15cacc40e5890a15f11820988cacfe0d0d594155 authored over 4 years ago by Pavel Dimens <[email protected]>
docstring touchup

520b006546e9c3f719294ad18d64d765dbf3f871 authored over 4 years ago by Pavel Dimens <[email protected]>
create docstring for relatedness methods

5326bfd5fee6ce0902ca86c8392563bb7c021ee5 authored over 4 years ago by Pavel Dimens <[email protected]>
docstring fix

5a00caebd1c4e8727c057b937c6d99c3e562890a authored over 4 years ago by Pavel Dimens <[email protected]>
add wrapper and exports

90f6e7bbdbec44b98bb76281af2711d660db7431 authored over 4 years ago by Pavel Dimens <[email protected]>
add methods for specific individuals

2d55e2a6a6d37df4997d1c7404161ef2804339bf authored over 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

746e8d5259ee9439656faff992f753ab65461daa authored over 4 years ago by Pavel Dimens <[email protected]>
update

e866e1305b9060f057be65a0cbc1546bcb2bd438 authored over 4 years ago by Pavel Dimens <[email protected]>
Update RelatednessMoments.jl

58a318998959702c703e18a74c7b65ee7e13c830 authored over 4 years ago by jdselwyn <[email protected]>
Update RelatednessMoments.jl

58377270ddc7919952ad5af151c4c64883cfbc96 authored over 4 years ago by jdselwyn <[email protected]>
Update RelatednessMoments.jl

2c454410c536c8491480ccc78b12b8b3f1636b84 authored over 4 years ago by jdselwyn <[email protected]>
Update RelatednessMoments.jl

c4ff7341c92d6fb431aa35f9c01a1102bc52a924 authored over 4 years ago by jdselwyn <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

14619c327196453031c2873b015ccfb66b850970 authored over 4 years ago by Pavel Dimens <[email protected]>
iterate column creation for bootstraps

b8fb04ed78e24ad6dbd5011b74b527944cb1661c authored over 4 years ago by Pavel Dimens <[email protected]>
Update RelatednessMoments.jl

037f0733a52d7869bf4e3eb2b82bfa47961f2192 authored over 4 years ago by jdselwyn <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

e38ea209ae0215f5e86b04662dec8b30bd8e9264 authored over 4 years ago by Pavel Dimens <[email protected]>
tweaks

bca1783f59bd9c95fcffca9e18e6f7923412cc7d authored over 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

85bbcb6fd7e0ed2c396f92c2ab3919fc7e47104c authored over 4 years ago by jdselwyn <[email protected]>
Update RelatednessMoments.jl

c79ee8a27fe5396f541fa09e6e29cf9493ebc6f0 authored over 4 years ago by jdselwyn <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

ddf65fb48f9d95299aa864880abbfc0abf952679 authored over 4 years ago by Pavel Dimens <[email protected]>
add multi-method tolerance

16c8cf6276d3f33d3825df69cd2f08d8aeac0b30 authored over 4 years ago by Pavel Dimens <[email protected]>
Update RelatednessMoments.jl

8e8b0f38a5a967e51e32b7218739b71b47edef21 authored over 4 years ago by jdselwyn <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

a30bd77a5bddfafba42f7e0abbd7a26cdc2421fe authored over 4 years ago by jdselwyn <[email protected]>
Update RelatednessMoments.jl

bdea5d0c40e551d6ca0845d0808e0a29ff177c20 authored over 4 years ago by jdselwyn <[email protected]>
fixes

1a59dff063115241001c46ce5ed3af3e9b91d36c authored over 4 years ago by Pavel Dimens <[email protected]>
remove redundant geno call

64e2dce0781753b559f8fc12349e848d94dbecbf authored over 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

70cb0123842ef917361bb536f04c423fdcf87226 authored over 4 years ago by Pavel Dimens <[email protected]>
update docstrings signatures

b82a3b244476bf8b173ba10940b0179c54d3c9e8 authored over 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

f946e0b291b0479435e58cc04e8a8acb3b3704da authored over 4 years ago by jdselwyn <[email protected]>
Update RelatednessMoments.jl

44a618e192e0b830d9c05e8388fa4dd94fa641e8 authored over 4 years ago by jdselwyn <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

0f1b061aaa8d78a0f3e170ee43b0ff6d367e36e2 authored over 4 years ago by Pavel Dimens <[email protected]>
updated function signatures

dadf5a40e91c0dbfea272a0a0e1d44cb5a86c212 authored over 4 years ago by Pavel Dimens <[email protected]>
Update RelatednessMoments.jl

c49b56b78d6dfe74afcac4ed89139d6b46470021 authored over 4 years ago by jdselwyn <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

8555f0bc84101d6a65bd9eb1596e8e4b828be284 authored over 4 years ago by jdselwyn <[email protected]>
Update RelatednessMoments.jl

651c7afdc1942e598af8fcb711f8c875f3fd09ea authored over 4 years ago by jdselwyn <[email protected]>
update vector allocations

77c5fd5804647f947ae558444ce51facef69b734 authored over 4 years ago by Pavel Dimens <[email protected]>
update vector allocation

ca8b62104e05fcfb0c11551453438a7550f26835 authored over 4 years ago by Pavel Dimens <[email protected]>
Update RelatednessMoments.jl

f74df3ba381402e3849e359a4115ae944f2cdd95 authored over 4 years ago by jdselwyn <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

84093174297665eba8817645cafaad4eb47bd546 authored over 4 years ago by jdselwyn <[email protected]>
Update RelatednessMoments.jl

3806d6d8933a2bc6ca4417d76c4fa039ca15e51c authored over 4 years ago by jdselwyn <[email protected]>
minor allocation tweaks

726f54b710de6db95fc2292503a3629e4e7d6256 authored over 4 years ago by Pavel Dimens <[email protected]>
minor tweaks

de0cdd6622fbd84fd68155aa51b26fa60469d714 authored over 4 years ago by Pavel Dimens <[email protected]>
Update RelatednessMoments.jl

100ccb0a5ae0278fee4cc30f05a59effc3f47e04 authored over 4 years ago by jdselwyn <[email protected]>
Update RelatednessMoments.jl

5928eb1f6a59d3396d14d19100fcc2a52a854a40 authored over 4 years ago by jdselwyn <[email protected]>
Update RelatednessMoments.jl

ad977cbd8f605a108c0dd0fe46bdea71e31ba685 authored over 4 years ago by jdselwyn <[email protected]>
Update RelatednessMoments.jl

b64dfd72c2c9640b9fd86db674397a44804a82c7 authored over 4 years ago by jdselwyn <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

f5849d1f70826f3e377d006d4a4892a9c7f5fe76 authored over 4 years ago by Pavel Dimens <[email protected]>
update matrix methods

a3dcb114f228d9c1580638f62158bfda220567c5 authored over 4 years ago by Pavel Dimens <[email protected]>
Update RelatednessMoments.jl

b2190f76cf927cc94d1971e7589d670ce7419535 authored over 4 years ago by jdselwyn <[email protected]>
Update PairwiseRelatedness.jl

36407602111dbf6d033fd11784f2375177001d44 authored over 4 years ago by jdselwyn <[email protected]>
Update RelatednessMoments.jl

ef4bf2e16fc824603ae3138e271207a571494fc1 authored over 4 years ago by jdselwyn <[email protected]>
Update RelatednessMoments.jl

ddc4fd85b1135b76159fbcc6b7f625c6340ef653 authored over 4 years ago by jdselwyn <[email protected]>
optimize multitest_missing, add pairwise_pairs

2c8634676f1132323d156cf803d31f1e1dca8f87 authored over 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

6714ee185b5bf14a4531236fce08754740bd1b0f authored over 4 years ago by Pavel Dimens <[email protected]>
add reduce components

317922fc84d1430c13afbe392541c359e3097c28 authored over 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

faa45508d3c3038e06033510cb5cc680d508f343 authored over 4 years ago by jdselwyn <[email protected]>
Update RelatednessMoments.jl

13891fcc8fa8151cbfadc62bb2f4b555bbb883d8 authored over 4 years ago by jdselwyn <[email protected]>
reduce freq allocations

482c882218e4772b0260a8cd0d3ed1e6e88c847f authored over 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'kinship' of https://github.com/pdimens/PopGen.jl into kinship

ef6b449bb2a78d3e6daa93ef653dd2e329c10a15 authored over 4 years ago by Pavel Dimens <[email protected]>
reduce some allocations

a23d9d354e90e5697e1980ee4188518ed8db21d2 authored over 4 years ago by Pavel Dimens <[email protected]>
Update RelatednessMoments.jl

ea3ae5cbfe8d6c7dea78acfb412171183ab8a096 authored over 4 years ago by jdselwyn <[email protected]>
Update RelatednessMoments.jl

67a6c58840240efca9fc277520b65f7967bea996 authored over 4 years ago by jdselwyn <[email protected]>
update pairwise

c6b28cf1e31415fad7d7266728f9031cb7c14c82 authored over 4 years ago by Pavel Dimens <[email protected]>
export quickstart and size

b940b03e6c451bb3d56cdfd53b3d9b78d560631f authored over 4 years ago by Pavel Dimens <[email protected]>
fix typo/bug

6f39d71bc981b2e4626a29ea01dcd102fff08bb4 authored over 4 years ago by Pavel Dimens <[email protected]>
touchups

9b485f37912cfd66fe21be8f32fdb574ed60f0b3 authored over 4 years ago by Pavel Dimens <[email protected]>
tune up moments estimators (sans Wang)

8f2752303c6cf4d5414578d930b5fbcccc8e9b90 authored over 4 years ago by Pavel Dimens <[email protected]>
add Missings.jl

95f163b5310f689fa3744e2629a233cf0b1b7707 authored over 4 years ago by Pavel Dimens <[email protected]>
fix all dict functions in AlleleFreq

b784a6cf807623e54fd68f49bd66bf3879664337 authored over 4 years ago by Pavel Dimens <[email protected]>
Update RelatednessMoments.jl

d14db27186e0e536e0e0f8b923e4f9e315cce450 authored over 4 years ago by jdselwyn <[email protected]>
Update RelatednessMoments.jl

08f592a611de1a11025db981fb524680275ce655 authored over 4 years ago by jdselwyn <[email protected]>
Update RelatednessMoments.jl

344b4366fc3c5829bf7681775818ed2002240c8c authored over 4 years ago by jdselwyn <[email protected]>
Update RelatednessMoments.jl

5ac8c5fa3f961311114b293e90702887355bcb3d authored over 4 years ago by jdselwyn <[email protected]>
Update RelatednessMoments.jl

f42d0f65e6e3c96619eac6d39a9e5b6e82f58481 authored over 4 years ago by jdselwyn <[email protected]>
Update RelatednessMoments.jl

2d7b63adbc10fe360d94fcac1cf85885979faa2f authored over 4 years ago by jdselwyn <[email protected]>
add todo text

e310b89195d1e64b2f83edb1b4a57d8e597b5f89 authored over 4 years ago by Pavel Dimens <[email protected]>
split relatedness, method consolidation

81daec95bdb5d80fea08413005abe41cab348cf2 authored over 4 years ago by Pavel Dimens <[email protected]>
nicer usage statement

37a1ed04d8afbd60321b3a918f630eab1588514c authored over 4 years ago by Pavel Dimens <[email protected]>
Update PairwiseRelatedness.jl

5dbd939cc58bbb5f5e95c61a79d189b7b3d384f3 authored over 4 years ago by jdselwyn <[email protected]>
Update PairwiseRelatedness.jl

b268bb17cbdb5259065bb868e058399e953802f2 authored over 4 years ago by jdselwyn <[email protected]>
Update PairwiseRelatedness.jl

2f7b26ec3dfc26e58212106d3842651cea52ebb3 authored over 4 years ago by jdselwyn <[email protected]>
Update PairwiseRelatedness.jl

9e45c8973af316ab901405817a608696d5b575e1 authored over 4 years ago by jdselwyn <[email protected]>
Update PairwiseRelatedness.jl

355cb908c932ed1e3e7f6118ee1e7fbe82f60b53 authored over 4 years ago by jdselwyn <[email protected]>
Update PairwiseRelatedness.jl

5ff1d76294f7cf9fc38b425c4eb81f5330547880 authored over 4 years ago by jdselwyn <[email protected]>
Update PairwiseRelatedness.jl

e330518d5624a0c042f7c13b0465162e0cdffa65 authored over 4 years ago by jdselwyn <[email protected]>
Merge branch 'dev' of https://github.com/pdimens/PopGen.jl into dev

d64ad6d1c6b299c6fe060608659fe284f7ae2df0 authored over 4 years ago by Pavel Dimens <[email protected]>
rename LR -> QG

18a9dac0c0e0dcbe6bef25d3c34b2bd054194736 authored over 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'dev' of https://github.com/pdimens/PopGen.jl into dev

32cb4ba10bedb04b83dbd90bf8daa393be2eab86 authored over 4 years ago by jdselwyn <[email protected]>
update relatedness to work for lr

7874ebae077095206da2f24e554eed42c55d638c authored over 4 years ago by Pavel Dimens <[email protected]>