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github.com/BioJulia/PopGen.jl

Population Genetics in Julia
https://github.com/BioJulia/PopGen.jl

Base.show flexibility

0500b48a9c41eec1487cef2f5c3834e8ebb64ff5 authored almost 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'dev' of https://github.com/pdimens/PopGen.jl into dev

f424bd823734b7f9b423d5e1565fcfcf60238434 authored almost 4 years ago by Pavel Dimens <[email protected]>
fix rename

0fb45cd789aff612379e84642d9443e1295c0f38 authored almost 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'dev' of https://github.com/pdimens/PopGen.jl into dev

d6ae516f9a6cf3f37ce0ca8858199edebaf46d0b authored almost 4 years ago by Pavel Dimens <[email protected]>
replace popdata2____ as methods

ba11037197f14b713a6694620ebd379fb687c34e authored almost 4 years ago by Pavel Dimens <[email protected]>
Add Base.show flexibility

96d6f1089887167c05ab833941dca233a2e2367b authored almost 4 years ago by Pavel Dimens <[email protected]>
add PooledArrays to test deps

03adc111a076f317617754d2b33813520e749da8 authored about 4 years ago by Pavel Dimens <[email protected]>
revert meta creation

a305a9bee633f2d3ab5b200704743a68dd6c106c authored about 4 years ago by Pavel Dimens <[email protected]>
actually add Test to project.toml

5d84856b88d8aa62ea02b438453ba216cc5a7f21 authored about 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'dev' of https://github.com/pdimens/PopGen.jl into dev

f1fba544a4c897c0b816a34bba3450356e62fde6 authored about 4 years ago by Pavel Dimens <[email protected]>
add geneticvariation/gzip test deps

ba15bf02f364a4949a29a0fdd95c0f9dff7d2235 authored about 4 years ago by Pavel Dimens <[email protected]>
Merge pull request #51 from pdimens/compathelper/new_version/2020-12-12-00-52-16-869-2184825279

CompatHelper: add new compat entry for "RandomNumbers" at version "1.4"

624afb8ee4490223b6d9ecae45d721c11dc4ecc8 authored about 4 years ago by Pavel V. Dimens <[email protected]>
add more tests

c16d5db7cd3486cbaa50af3c3332bfd058640b19 authored about 4 years ago by Pavel Dimens <[email protected]>
replace manual creation with generate_meta

e470c48cc96ddeb3ed0efeac86a0985601882724 authored about 4 years ago by Pavel Dimens <[email protected]>
rename missing to missing_data

11f8611a59dce1a87fdc231085ceee0e2f3bdc4f authored about 4 years ago by Pavel Dimens <[email protected]>
add generate_meta

4067dc988fb7b70aa18c7ffe537bbf3d322db969 authored about 4 years ago by Pavel Dimens <[email protected]>
make robust against missings

f16db7e0baba167bdeb839743f676d3cd7f5c546 authored about 4 years ago by Pavel Dimens <[email protected]>
fixed DataFrames v0.22 syntax deprecation bug

2d3b98ce290dd2879f467fdc24fdc4450f733e8e authored about 4 years ago by Pavel Dimens <[email protected]>
update tests for get_genotypes api change

b1b0da0d76ed9f5e80a725da06969e05f5cf7a12 authored about 4 years ago by Pavel Dimens <[email protected]>
fix occurences of deprecated sharks/cats datasets

b17dac1e37130cf924330e92159bd3da7ab02a16 authored about 4 years ago by Pavel Dimens <[email protected]>
CompatHelper: add new compat entry for "RandomNumbers" at version "1.4"

b42d593582e7bdc023616a225bcc849482d1b846 authored about 4 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
clean completed todos, bugfix

69c9abff378b424478b15ad9bb037dcd7d9e563e authored about 4 years ago by Pavel Dimens <[email protected]>
make richness() kwarg consistent

879e0bbb058a87f2d4e4c040cfd2731b66454e97 authored about 4 years ago by Pavel Dimens <[email protected]>
add X_freqtable functions

855db6dbfa1ce4784fe8e05818c1113da2de022f authored about 4 years ago by Pavel Dimens <[email protected]>
posthoc MT => Xorshift

a6775b729b94755005412f150659f4e4b091c808 authored about 4 years ago by Pavel Dimens <[email protected]>
add RandomNumbers.jl and replace MT w/ Xorshift

a9970f761303dffe1241503e1fa59f0c2fc90e8a authored about 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'dev' of https://github.com/pdimens/PopGen.jl into dev

25ab16a4ad6dbde99cf077fa98c2293d355b8a6e authored about 4 years ago by Pavel Dimens <[email protected]>
fix dataset macros

116e631166ed2e690fe3b2f8586f8faaeedc0710 authored about 4 years ago by Pavel Dimens <[email protected]>
Merge pull request #50 from pdimens/compathelper/new_version/2020-11-28-00-43-49-199-1751520

CompatHelper: bump compat for "StaticArrays" to "1.0"

5edc10f7a7b6f13446452d2573b1155f1210398b authored about 4 years ago by Pavel V. Dimens <[email protected]>
add relatedness_posthoc

de6f598678d87efe547ecb335ba7009e0f62151f authored about 4 years ago by Pavel Dimens <[email protected]>
CompatHelper: bump compat for "StaticArrays" to "1.0"

ceacd79d6843784db876073fb78e4e5957901ba2 authored about 4 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Merge pull request #48 from pdimens/dev

bump to 0.4.2

b5cb5e5e4cebc0ea2574a59ce9fbafa479346dca authored about 4 years ago by Pavel V. Dimens <[email protected]>
directory restructuring for scratch

616d4d53c607a6c47d4d8e9141a7bcd4db580ec9 authored about 4 years ago by Pavel Dimens <[email protected]>
bump vers and update tests for macro sharks/cats

0e59ebf118b6451d01b1ed8a95e7bcfbca472fa5 authored about 4 years ago by Pavel Dimens <[email protected]>
add @nancycats @gulfsharks, depwarns on old

5466ef8fc79fec8d9e40ad6625adb764bf892be2 authored about 4 years ago by Pavel Dimens <[email protected]>
remove graphs deps

complete accident that they were included

d91fd8a6276f8507e17eab327091d0fb4fae61a3 authored about 4 years ago by Pavel V. Dimens <[email protected]>
fixed population!()

e3fa407122c4fbac960cdb8732fbae4a5f110014 authored about 4 years ago by Pavel Dimens <[email protected]>
bump vers

72c2db31838d648d00207811fd8b68b62d5cd705 authored about 4 years ago by Pavel Dimens <[email protected]>
bump version number, correctly

3cf0fd84d9fac480d739abda5f365d5586cf3d6c authored about 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'dev' of https://github.com/pdimens/PopGen.jl into dev

e7eac853d036bd04940b13755dd4cd0d4ccf77bf authored about 4 years ago by Pavel Dimens <[email protected]>
Merge pull request #42 from pdimens/compathelper/new_version/2020-11-15-00-39-45-225-947094218

CompatHelper: bump compat for "CSV" to "0.8" and fix version number

dd4080a3d7e8ef9b1dd7359580759c2b319b8c65 authored about 4 years ago by Pavel V. Dimens <[email protected]>
Merge branch 'dev' into compathelper/new_version/2020-11-15-00-39-45-225-947094218

e99e5db119d0e832eb5d298e921007df36817b21 authored about 4 years ago by Pavel V. Dimens <[email protected]>
Merge pull request #43 from pdimens/compathelper/new_version/2020-11-16-00-39-29-445-2465782919

CompatHelper: bump compat for "DataFrames" to "0.22"

00ece5b7d6914e73942a0584bd6947c4f40ea46e authored about 4 years ago by Pavel V. Dimens <[email protected]>
Merge pull request #44 from pdimens/compathelper/new_version/2020-11-16-00-39-43-936-4263952489

CompatHelper: bump compat for "JLD2" to "0.3"

b56e23d92dc2529840b5671b18af0adf2d8fd5bc authored about 4 years ago by Pavel V. Dimens <[email protected]>
CompatHelper: bump compat for "JLD2" to "0.3"

9939806ba94c5afeecfc44d6ea19eacc86ec82af authored about 4 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
CompatHelper: bump compat for "DataFrames" to "0.22"

c31f1550bcf515355819a1c27003de92fba19e53 authored about 4 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
CompatHelper: bump compat for "CSV" to "0.8"

cf85482d902f409f89e7ec69b4941e2d320867ec authored about 4 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
remove references to wang/dyadML

ae808599e7f1f2c07686ed0842a1aa34e923d342 authored about 4 years ago by Pavel Dimens <[email protected]>
Update TagBot.yml

bd539518b71d157c74ea4b36b4d858c406fa77f7 authored about 4 years ago by Pavel V. Dimens <[email protected]>
Merge pull request #39 from pdimens/dev

stage 0.1.0 release

a218bf41ab249199099e2a411ff62b9c1b4b5303 authored about 4 years ago by Pavel V. Dimens <[email protected]>
Merge branch 'release' into dev

36e1dfc7c3477555659472d052c30b536bd702d3 authored about 4 years ago by Pavel V. Dimens <[email protected]>
change to v0.1.0

change version number to reflect breaking changes.

2ba045707d20a9b76b03bdeedd3287dd4309b7a1 authored about 4 years ago by Pavel V. Dimens <[email protected]>
fix alleles miss=true and type stability

109b7105115254bf1aeb82ccbe6c78035219c937 authored about 4 years ago by Pavel Dimens <[email protected]>
Update Utils.jl

acf122fb6e6582ad5f022d7139b48aa6f36d1006 authored about 4 years ago by Pavel V. Dimens <[email protected]>
add relatedness posthocs

48b67e5af2238ca74f781e30879f79f6ddd045ee authored about 4 years ago by Pavel Dimens <[email protected]>
add manipulate tests

5467d3c7155afd43d14ddc2f8af2ed9919cf45e3 authored about 4 years ago by Pavel Dimens <[email protected]>
mroe test fixes

808155cfa992cff467e7cf1c9df0daf48d762541 authored about 4 years ago by Pavel Dimens <[email protected]>
fix tests

2d011b40076f7506b052ad3aad08910142a64ef0 authored about 4 years ago by Pavel Dimens <[email protected]>
fix and add tests

1d5f685a304fb1524b3868f4221f918fddc26642 authored about 4 years ago by Pavel Dimens <[email protected]>
add missing, missing method

30cdacb4f58abb176aa384cf17e2d50cbd36b733 authored about 4 years ago by Pavel Dimens <[email protected]>
add more tests

a13759618c0740f3ea29b7ad34c107548cfd2b76 authored about 4 years ago by Pavel Dimens <[email protected]>
hopefully fix CI

0b02f6475f2b751b87c97d494e9d8603eddde193 authored about 4 years ago by Pavel Dimens <[email protected]>
add first tests

1519e6d28fccca657b72f31aa0f8d37b5fbf466f authored about 4 years ago by Pavel Dimens <[email protected]>
fix hetero_e for locus missing in pop

709be89a928f96d688f30aff07013d6d001c2a19 authored about 4 years ago by Pavel Dimens <[email protected]>
add julia 1.5 build test

1c8f9c7ccde3b03df6955a5b81c32a103eed6c8b authored about 4 years ago by Pavel V. Dimens <[email protected]>
Update Project.toml

76a392fff4ae3dc87e4c02fb8499e5d6bc17e8de authored about 4 years ago by Pavel V. Dimens <[email protected]>
fix writing error

c5cafa0525fc628f8dcf7fab76931211fad6e081 authored about 4 years ago by Pavel Dimens <[email protected]>
Merge pull request #38 from pdimens/compathelper/new_version/2020-10-21-00-39-01-821-1863737854

CompatHelper: add new compat entry for "ProgressMeter" at version "1.4"

19bc662c4f2754eefd5c6b1003d85c2ca79032d4 authored about 4 years ago by Pavel V. Dimens <[email protected]>
Merge branch 'dev' into compathelper/new_version/2020-10-21-00-39-01-821-1863737854

c3baa8ae6db20252b8ede9c86d7b865e70a88ea3 authored about 4 years ago by Pavel V. Dimens <[email protected]>
Merge pull request #37 from pdimens/compathelper/new_version/2020-10-21-00-38-48-549-3636675641

CompatHelper: add new compat entry for "PooledArrays" at version "0.5"

80aa73407e795749ebfa2bf26a424fbdf45d5c9d authored about 4 years ago by Pavel V. Dimens <[email protected]>
Merge branch 'dev' into compathelper/new_version/2020-10-21-00-38-48-549-3636675641

a8af53e33652a8c8a735f5d41087eb511b913519 authored about 4 years ago by Pavel V. Dimens <[email protected]>
Merge pull request #36 from pdimens/compathelper/new_version/2020-10-21-00-38-35-372-195295088

CompatHelper: add new compat entry for "StaticArrays" at version "0.12"

38ed8fb56cced6c40da9996fa489f34423c08d57 authored about 4 years ago by Pavel V. Dimens <[email protected]>
Merge branch 'dev' into compathelper/new_version/2020-10-21-00-38-35-372-195295088

044e644314f183cc2d43193cb84a927ab61e806d authored about 4 years ago by Pavel V. Dimens <[email protected]>
Merge pull request #35 from pdimens/compathelper/new_version/2020-10-21-00-38-22-290-3951012692

CompatHelper: add new compat entry for "GZip" at version "0.5"

103279a84f9504f52b9c2ee3522686ab68e3d0a0 authored about 4 years ago by Pavel V. Dimens <[email protected]>
Merge pull request #34 from pdimens/compathelper/new_version/2020-10-21-00-38-08-626-3144937314

CompatHelper: add new compat entry for "Requires" at version "1.1"

8d5beae4a2157e84d4fe7c60fb46b9fba2fc1a8a authored about 4 years ago by Pavel V. Dimens <[email protected]>
CompatHelper: add new compat entry for "ProgressMeter" at version "1.4"

62f3d4d669b9d911623a416f1c8c4bcc7dd3ee58 authored about 4 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
CompatHelper: add new compat entry for "PooledArrays" at version "0.5"

278f67f14bd3b25262ea3c69eac90641ab71910f authored about 4 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
CompatHelper: add new compat entry for "StaticArrays" at version "0.12"

096c0e09c842bde1be47b75562e431bc0b38ba58 authored about 4 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
CompatHelper: add new compat entry for "GZip" at version "0.5"

a048017f5b53d972fb8b614e42e8978776a96bbf authored about 4 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
CompatHelper: add new compat entry for "Requires" at version "1.1"

363af4c970dec21a5bc97786811f2216ea66651c authored about 4 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Merge pull request #31 from pdimens/compathelper/new_version/2020-09-19-00-31-59-552-1643953571

CompatHelper: bump compat for "JLD2" to "0.2"

621473ce196a85d9e33d48e5dd103b9871357be2 authored about 4 years ago by Pavel V. Dimens <[email protected]>
Merge pull request #32 from pdimens/compathelper/new_version/2020-10-08-00-29-11-667-4016622870

CompatHelper: bump compat for "Distributions" to "0.24"

bfe3d11c8b4dcf8472416a532314fabe4cc48f5f authored about 4 years ago by Pavel V. Dimens <[email protected]>
Merge pull request #33 from pdimens/kinship

merge Kinship into dev for release staging

d3b8f5bda9f09a9113c011b28333774547c36c36 authored about 4 years ago by Pavel V. Dimens <[email protected]>
Update ci_dev.yaml

7aae937afb391d5656aad55b14cb19824e1fbe14 authored about 4 years ago by Pavel V. Dimens <[email protected]>
CompatHelper: bump compat for "Distributions" to "0.24"

3ec4dfc3fee12e0bb992bc6755afa6abe2dae653 authored about 4 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
parse length(pairs) once

ec116dfa8e3dd06bd52b99d5de86b19d338045ca authored about 4 years ago by Pavel Dimens <[email protected]>
typo

5ee7f4cde7ffaffc35828220f31219184776979c authored about 4 years ago by Pavel Dimens <[email protected]>
typos

9dfa61445011a0714c80109d781460a0c6e5b350 authored over 4 years ago by Pavel Dimens <[email protected]>
CompatHelper: bump compat for "JLD2" to "0.2"

7c762595e2b837b9d5055ca50652c2199f0c3886 authored over 4 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
add Structure file support

3be7b5fd9a1d8a23c646713a18b8bfca027b23e7 authored over 4 years ago by Pavel Dimens <[email protected]>
move Simulations.jl to PopGenSims.jl

3212cc60a459a60650cc939e1b78bbc90274a168 authored over 4 years ago by Pavel Dimens <[email protected]>
docstring

ede0c23970c926f24c3855b9bcba15684a4e199f authored over 4 years ago by Pavel Dimens <[email protected]>
add conditions for sim relatedness

a014ca2b778632cb8ea42e6d281c8360b6b4c021 authored over 4 years ago by Pavel Dimens <[email protected]>
add StaticArrays and sort method

cfff2eec335d37b76beb35b030e3a74082d76ef7 authored over 4 years ago by Pavel Dimens <[email protected]>
boot output from df to NamedTuple + merge function

2e3717fb20e702cf5f5c4902b3c0f6d2db3206f2 authored over 4 years ago by Pavel Dimens <[email protected]>
parallelize permutations

b946a37f7ce598e92db2ae0f82af249f59f62622 authored over 4 years ago by Pavel Dimens <[email protected]>
rm depr line

436172df4f9ab2203d4e8f8f81c66b4adde2b791 authored over 4 years ago by Pavel Dimens <[email protected]>
fix typo introduced in last commit (oops!)

ccbb96a73558070375b0ea74cac21ee527d598d5 authored over 4 years ago by Pavel Dimens <[email protected]>
swap long<->lat cols in genepop importer

50cf2565bd73fd57f4ec997ee30b1133c324631a authored over 4 years ago by Pavel Dimens <[email protected]>
add write-to-structure

c92dc189d500f05acbcd63ee6b244ccbc5bd1405 authored over 4 years ago by Pavel Dimens <[email protected]>