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github.com/BioJulia/PopGen.jl

Population Genetics in Julia
https://github.com/BioJulia/PopGen.jl

move data to Core

8f81af9ff58e48649283cb1ee639d39edb1b1bc1 authored about 3 years ago by Pavel Dimens <[email protected]>
add Random

931efe2022a1d979455afc289324d3b2abddc038 authored about 3 years ago by Pavel Dimens <[email protected]>
restore Random: shuffle

1c4179d2db42108e6e6dfdd24d52ce3e3418d311 authored about 3 years ago by Pavel Dimens <[email protected]>
more overlooked typos

a0d9249fae39fcb48084b6349cbb49010d693cb3 authored about 3 years ago by Pavel Dimens <[email protected]>
update fst internals with _

ac1bf2ab19cfd86ad5ffb422d38273ffcaab0deb authored about 3 years ago by Pavel Dimens <[email protected]>
remove old name, update module

9dca1671dd7e47c889933c6831558cc843f3ad0a authored about 3 years ago by Pavel Dimens <[email protected]>
add locus-by-locus methods

bd416e02b801281e4345dd29438dc5025d16d597 authored about 3 years ago by Pavel Dimens <[email protected]>
add feature req

10ef4e8a4082954d0dfcacb14f0c89b806658add authored about 3 years ago by Pavel Dimens <[email protected]>
update .loci ref

103d0ebbfad41968e2f14335bb91719479f91204 authored about 3 years ago by Pavel Dimens <[email protected]>
rm allele freq remnants

7eeeb1ca1cc273cd16948094877046d2c8700066 authored about 3 years ago by Pavel Dimens <[email protected]>
Update PopGen.jl

8164b4f6a2e207c3987ecc59c6faabebdc58ccc6 authored about 3 years ago by Pavel V. Dimens <[email protected]>
Update Project.toml

f3c732366b5e4eea443b2d85520b4a199d0594e6 authored about 3 years ago by Pavel V. Dimens <[email protected]>
update compat to recent vers

8dca506176b138fc09d6c470a3873abff6a91abf authored about 3 years ago by Pavel Dimens <[email protected]>
move AlleleFreq to Core.jl

e79b323e847fe4d0d270523166c7fbd09d8f9d8d authored about 3 years ago by Pavel Dimens <[email protected]>
restrict compat

5588a655bb8bea93e178ca174a30bc598d056982 authored about 3 years ago by Pavel Dimens <[email protected]>
add more exports

c269fbb4f074b0065c5eabfbf8825fd4872e6fa8 authored about 3 years ago by Pavel Dimens <[email protected]>
Merge branch 'dev' of https://github.com/pdimens/PopGen.jl into dev

58d3c783c23116ad327ea56d15494112d4a234e1 authored about 3 years ago by Pavel Dimens <[email protected]>
more reexport statements

edae35abc89be1a1f91cbb29b6eac94dd22cd3ae authored about 3 years ago by Pavel Dimens <[email protected]>
Merge pull request #90 from BioJulia/compathelper/new_version/2021-10-13-00-39-32-690-01244245393

CompatHelper: add new compat entry for Reexport at version 1, (keep existing compat)

2e1f17ff6059ca731a8b059bdfeb45033485080f authored about 3 years ago by Pavel V. Dimens <[email protected]>
Merge pull request #91 from BioJulia/compathelper/new_version/2021-10-13-00-39-45-776-02443049024

CompatHelper: add new compat entry for PopGenCore at version 0.2, (keep existing compat)

d70c6e80d7f92cbd7d1594c52e76bee67a969f8f authored about 3 years ago by Pavel V. Dimens <[email protected]>
CompatHelper: add new compat entry for PopGenCore at version 0.2, (keep existing compat)

6efacef6e0f9d4ca6164b8163a6bfc6773571553 authored about 3 years ago by CompatHelper Julia <[email protected]>
CompatHelper: add new compat entry for Reexport at version 1, (keep existing compat)

2d9f2f0cc5d93808a622d30860cfba76ab513ba5 authored about 3 years ago by CompatHelper Julia <[email protected]>
Update pkgtests.yaml

0331af5ecb9866e203d0a34e7cbec589c8b23bb3 authored about 3 years ago by Pavel V. Dimens <[email protected]>
Rename ci_dev.yaml to pkgtests.yaml

1bb1cd4e4740f6c05129ee9e909a59fd4e3648bc authored about 3 years ago by Pavel V. Dimens <[email protected]>
fix samples refrence

5b184445fdc503fd7774bd0a3380b634af90e3a4 authored about 3 years ago by Pavel Dimens <[email protected]>
fix iterable indexing

1c46c82e65dbac59e928528ec01f2ee04e93bb66 authored about 3 years ago by Pavel Dimens <[email protected]>
overlooked typo

c63240cf499147ca696fe9540edfdeb7dd63f8a9 authored about 3 years ago by Pavel Dimens <[email protected]>
change n finding

9a29445f799fe52c0ce16f8309311ace3a042b3a authored about 3 years ago by Pavel Dimens <[email protected]>
change n finding

f97395894de3705b0fb08faab62dfcd5cc4fe88f authored about 3 years ago by Pavel Dimens <[email protected]>
updated function signature

632e334b20b1f3800f5dff4c600f8adbd580b470 authored about 3 years ago by Pavel Dimens <[email protected]>
more test updates

06e3c1904af952fca55f3bd38552c1287f575b52 authored about 3 years ago by Pavel Dimens <[email protected]>
update tests

3993fdc3050c9d47d2334b09243ddcca0a0a43e4 authored about 3 years ago by Pavel Dimens <[email protected]>
update tests

aa50bdd8f72fad439eda145523bb04b6e48bfcf6 authored about 3 years ago by Pavel Dimens <[email protected]>
Update ci_dev.yaml

a35ed9540b8307b8aa3398977e6c5a6ac3fdcc92 authored about 3 years ago by Pavel V. Dimens <[email protected]>
Update Project.toml

57ccb60fb47edbef43fad445e8c0300473637987 authored about 3 years ago by Pavel V. Dimens <[email protected]>
compat fix

072072485790ad3ce4f106f1f980e12996dd929b authored about 3 years ago by Pavel Dimens <[email protected]>
rm Requires mention

66af293723982adf94e2629962dfb95ba2ba91c6 authored about 3 years ago by Pavel Dimens <[email protected]>
big move to popgencore

b52d961afcab5226f0caf9beb707cf09a53085b3 authored about 3 years ago by Pavel Dimens <[email protected]>
add PopGenCore compat

317b35eb7cc9a93c4b2d43826c04640479a72f02 authored over 3 years ago by Pavel Dimens <[email protected]>
huge PopGenCore migration and upstreaming

70791b0db9407951363bdd27c0dfc8a1e79264ee authored over 3 years ago by Pavel Dimens <[email protected]>
migrate deps to PopGenCore

7eff20cc0307df56e19d2612f613c2dff04b7637 authored over 3 years ago by Pavel Dimens <[email protected]>
Merge branch 'dev' of https://github.com/pdimens/PopGen.jl into dev

8d3566663204e4ddf03f68a1475577793e9f5aa8 authored over 3 years ago by Pavel Dimens <[email protected]>
Update FstPermutations.jl

196213518e463b0be5758a2381eafd34db89fc26 authored over 3 years ago by Pavel V. Dimens <[email protected]>
move loci to PopGenIO

92eb6eeb0818a4f044780ceeac3f98cae5ec4669 authored over 3 years ago by Pavel Dimens <[email protected]>
rm RandomNumbers from Tests project.toml

c60cf3bf13e310a4735bd015fdc72105d41b9dc6 authored over 3 years ago by Pavel Dimens <[email protected]>
Merge pull request #80 from BioJulia/compathelper/new_version/2021-07-27-00-36-20-502-1664198753

CompatHelper: add new compat entry for "NaturalSort" at version "1"

9ada6aafd8b547a157c460c4ae4f93c8a87ac93f authored over 3 years ago by Pavel V. Dimens <[email protected]>
CompatHelper: add new compat entry for "NaturalSort" at version "1"

8bd820cddaf4caabb652cf90a22bc7690c0d3a8a authored over 3 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
fix typo

70be376104637894738b8026bd04c2c09421918c authored over 3 years ago by Pavel Dimens <[email protected]>
fixes #77

6ffdde743b958d9c4a428c354c5f96fd05a9013f authored over 3 years ago by Pavel Dimens <[email protected]>
fixes #76

ca5b654637327f3e4f18b3dbe44b6ddb4fb2c305 authored over 3 years ago by Pavel Dimens <[email protected]>
consolidate PopData marker printing

8d3b60b8377c761b3af435d31aaecc5483e3d2ef authored over 3 years ago by Pavel Dimens <[email protected]>
fixes #75

8faa648ada8ab1348d9ab85b2c145939f42c4e39 authored over 3 years ago by Pavel Dimens <[email protected]>
add NaturalSort

41131325a2a955ea822167386f0918b8c3cbcade authored over 3 years ago by Pavel Dimens <[email protected]>
add NaturalSort, increase lower bounds of deps

df904cffaa440c2d370ea2cf7f5a58486b7b04b0 authored over 3 years ago by Pavel Dimens <[email protected]>
fixes [bug] export keep and keep! #78

8ec38c08d3d299f20769be572a872dc4acc719af authored over 3 years ago by Pavel Dimens <[email protected]>
Merge pull request #73 from BioJulia/compathelper/new_version/2021-05-16-01-12-24-128-1843610568

CompatHelper: bump compat for "MultipleTesting" to "0.5"

9d72d253738b0bf75599390111ed6a908ca73534 authored over 3 years ago by Pavel V. Dimens <[email protected]>
CompatHelper: bump compat for "MultipleTesting" to "0.5"

d2175708b7f5a3127cc905513641cea9864340e9 authored over 3 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
Update Project.toml

86f53c183c2c7be9f937ae429a459e0a921cbea5 authored over 3 years ago by Pavel V. Dimens <[email protected]>
Merge pull request #70 from BioJulia/compathelper/new_version/2021-05-05-00-57-21-811-2670172845

CompatHelper: bump compat for "DataFrames" to "1.1"

88edb124dc2d8d19b9c53654fc1a783b488aa400 authored over 3 years ago by Pavel V. Dimens <[email protected]>
Merge branch 'dev' into compathelper/new_version/2021-05-05-00-57-21-811-2670172845

ec03584046fb99576b9b0bc87634a298d044ea67 authored over 3 years ago by Pavel V. Dimens <[email protected]>
Merge pull request #69 from BioJulia/compathelper/new_version/2021-05-03-01-04-10-729-4110009785

CompatHelper: bump compat for "Distributions" to "0.25"

345ca7ce3c6d46a80d10c153793455d2afaba97c authored over 3 years ago by Pavel V. Dimens <[email protected]>
Merge branch 'dev' into compathelper/new_version/2021-05-03-01-04-10-729-4110009785

8a5030e6116e0ae4b8646fc9635a9845889bef3e authored over 3 years ago by Pavel V. Dimens <[email protected]>
Merge pull request #68 from BioJulia/compathelper/new_version/2021-04-22-00-20-10-428-571431155

CompatHelper: bump compat for "DataFrames" to "1.0"

c26060b542e4fef50ca3c53634f0f18238e3479f authored over 3 years ago by Pavel V. Dimens <[email protected]>
CompatHelper: bump compat for "DataFrames" to "1.1"

3c124212c38668e520c246ba4fe549f020f24fb7 authored over 3 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
CompatHelper: bump compat for "Distributions" to "0.25"

ff93b24d3f90a1332363e39384fe3f037e089d0a authored over 3 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
CompatHelper: bump compat for "DataFrames" to "1.0"

39f3e6c06c8de4bd9cbf72b739fd80f4d430e1da authored over 3 years ago by github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
move conditionals to Conditionals.jl

770d213ea4aa1361882ae017b3175e38bf243709 authored over 3 years ago by Pavel Dimens <[email protected]>
bump version

084b9a7232ebf0f454efbef4ad1a647181868b52 authored over 3 years ago by Pavel Dimens <[email protected]>
fix hudson_fst typo

a8133cd0a11b1d5273e1e8a10b0a27f79c474c62 authored over 3 years ago by Pavel Dimens <[email protected]>
clean up TODO comments

186af8fc9fdae003bf9954ad50de785d00264661 authored over 3 years ago by Pavel Dimens <[email protected]>
Update Project.toml

9f3bf243fa0ff22bacf929b3748e9b6cfeb93820 authored over 3 years ago by Pavel V. Dimens <[email protected]>
Update FstMethods.jl

ee8a1a427b891db7a7b56aa0a9d01e40ed931395 authored over 3 years ago by Pavel V. Dimens <[email protected]>
bump version to 0.6.0

1338b9b56550e23e7e2da882974cd902d9525db1 authored over 3 years ago by Pavel Dimens <[email protected]>
remove deprecated map(fn, gdf) calls

898956b29ac7990b6a211c95e65188dd832775b3 authored over 3 years ago by Pavel Dimens <[email protected]>
vcf io kwarg consistency

dd0b0701bdab80900350ad0b64d30e353a3c295d authored over 3 years ago by Pavel Dimens <[email protected]>
swap out vcf test file

d8dacbe95975c7ba71edde447e35fc02a9201d5a authored over 3 years ago by Pavel Dimens <[email protected]>
add Hudson pairwise FST

380f6a8a97285211c67426a664f6871060d6e4c0 authored over 3 years ago by Pavel Dimens <[email protected]>
make drop_monomorphic faster

724cc5bc4eadb964a5153bc833026b33e4f6dcf3 authored over 3 years ago by Pavel Dimens <[email protected]>
add isbiallelic methods

17b0390ee804b5363605dc2cd05a2826e693db4a authored over 3 years ago by Pavel Dimens <[email protected]>
add nei87 fst permutations

a64ea3da1b99969cd226ad162cfecbc7d024f639 authored over 3 years ago by Pavel Dimens <[email protected]>
add WC permutation methods

fe9462403fe56b54dead4afc5faea17a4b7a83a1 authored almost 4 years ago by Pavel Dimens <[email protected]>
update permuations

a05abfb49311a8c99fa8c4965cd4f4956c8c468f authored almost 4 years ago by Pavel Dimens <[email protected]>
optimize and prep for significance testing

e4d4323bc9bef654987b3390f8ad3a8a36acde89 authored almost 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'dev' of https://github.com/pdimens/PopGen.jl into dev

95e17eaf64266508e91158287790ef1e8c04b6e5 authored almost 4 years ago by Pavel Dimens <[email protected]>
Update README.md

d703863332ce5a73a235da388e06718cb0a85a3a authored almost 4 years ago by Pavel V. Dimens <[email protected]>
perms

b42e461ad2ffda53f42605f9eca893207975e00b authored almost 4 years ago by Pavel Dimens <[email protected]>
begin alternative matrix implementation for perms

92ec51c33cbb280b95e77812eef4d22f8e771d7b authored almost 4 years ago by Pavel Dimens <[email protected]>
add fstats to module

bd7281eacb0e31932990c10ebcd92d2f3319b5c8 authored almost 4 years ago by Pavel Dimens <[email protected]>
housekeeping and speed improvements

fd59a33e8aa303824b82a9b2717b137b035f5416 authored almost 4 years ago by Pavel Dimens <[email protected]>
slightly cleaner written

b743831e7d6ce99cabee1694bb956f0a1ea9465c authored almost 4 years ago by Pavel Dimens <[email protected]>
update to release candidate

81397e314dc89ddd8f30c279f51cd6347758ab38 authored almost 4 years ago by Pavel Dimens <[email protected]>
parallelize pairwise FST methods

f22ae44ee026d15ab0b250a4cdd56219de698840 authored almost 4 years ago by Pavel Dimens <[email protected]>
fix and organize pairwise fst

72a4cad2fb858e5b85f3ef932fd92e38758d0dae authored almost 4 years ago by Pavel Dimens <[email protected]>
add skip_methods

517b6504f841db36f91e7ee0204d13bef2bf7bc3 authored almost 4 years ago by Pavel Dimens <[email protected]>
rm quickstart

5efdcc8ebc7a676259262c99a729b5cfd77a5e21 authored almost 4 years ago by Pavel Dimens <[email protected]>
fix docstrings

2b418b46e2b8f4ad55d652b7d0ff3f2e449d4269 authored almost 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'dev' of https://github.com/pdimens/PopGen.jl into dev

49ada7c71f32978f6b8065056f279ecc4ea54136 authored almost 4 years ago by Pavel Dimens <[email protected]>
Merge branch 'release' into dev

7ce0f81363322809cb990d15df6e421b0523b4e4 authored almost 4 years ago by Pavel V. Dimens <[email protected]>
bump version number

10572ca8ed87a83b7b1a09957013e37fcdd49864 authored almost 4 years ago by Pavel Dimens <[email protected]>
rename weircockerham

f12ae4182a05e61c74cdf6d689c258b0cf21f8c8 authored almost 4 years ago by Pavel Dimens <[email protected]>