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github.com/BioJulia/PopGen.jl

Population Genetics in Julia
https://github.com/BioJulia/PopGen.jl

minor housekeeping

831a073fdd99197abf562750de8954791e4a7520 authored over 5 years ago by pdimens <[email protected]>
add VCF parser, reduce memory load

Inclusion of VCF parser and GeneticVaration dependency. Additionally, ploidy and genotypes are n...

55fa3acd965d28e6195f29b4efc674cc5d9137b4 authored over 5 years ago by pdimens <[email protected]>
Update Project.toml

4438ed9f4db11dd16e014239a5cd439646192a73 authored over 5 years ago by pdimens <[email protected]>
fix broken functions with new format

531a9662aff48845586fb1b838d9f768575349ca authored over 5 years ago by pdimens <[email protected]>
isolate_genotypes

removed genotypes() and loci() and combined them into a single function isolate_genotypes that a...

ade83bb15549e40e0cc369784c4469185cfa09f2 authored over 5 years ago by pdimens <[email protected]>
added missing data handling

0cf1e720d18dcda2126f588c2cb529bb7725c188 authored over 5 years ago by pdimens <[email protected]>
Update Datasets.jl

8cc680bd1d39bb907991b6cc930ea0c3538a2c8a authored over 5 years ago by pdimens <[email protected]>
Update PopGen.jl

80d1f74f317031f06ea8d5aad40853fc43edd661 authored over 5 years ago by pdimens <[email protected]>
add testdata

1ab9ffea709b2441c3b0af0265713d3d60bfc28d authored over 5 years ago by pdimens <[email protected]>
Create Datasets.jl

440ed8cf421128b50fd5d30b26bb22a1a39d91a8 authored over 5 years ago by pdimens <[email protected]>
add testdata functions

1ceaad677babfc1722f0d37572fa06557a8ebd07 authored over 5 years ago by pdimens <[email protected]>
refactor popobj

988d0cd6e33d5ef3828c8820e97da0eb08673689 authored over 5 years ago by pdimens <[email protected]>
Update Read.jl

a8b36b5e1426c56374c9b5a5b80a3014d1cfbcf4 authored over 5 years ago by pdimens <[email protected]>
Update PopObj.jl

91ffffedb6cfd39ca427f3694f6954f70077d673 authored over 5 years ago by pdimens <[email protected]>
add icons

8d2744d2f519f2c4bdb8043538902c64017d1c36 authored over 5 years ago by pdimens <[email protected]>
optimize csv, update ploidy

eba19a49a3ad991507cb08eca5661eae25f996f0 authored over 5 years ago by pdimens <[email protected]>
Filtered oyster polyploid vcf

ef96ad1fe926559769335586b2a7fe1e95c1c294 authored over 5 years ago by jdselwyn <[email protected]>
Polyploid Pooled Oyster Mitochondrial data

8e378d26673f2b7f60bc0785774f279bf6739224 authored over 5 years ago by jdselwyn <[email protected]>
repo organization

a7b46a0856d550728f191fd91b11bfa5982f6dbe authored over 5 years ago by pdimens <[email protected]>
Update docs.png

6c374ec833a9fc8d18be8f7d32a4be58b10e040d authored over 5 years ago by pdimens <[email protected]>
Merge branch 'master' of https://github.com/pdimens/PopGen.jl

c311772643ebf70cb458f23419b5a5cea14025fc authored over 5 years ago by pdimens <[email protected]>
update docs, manupulate, geno counts

11c87a4bec7893c898a0582eda4a8391d5c448dc authored over 5 years ago by pdimens <[email protected]>
Update README.md

362807a6a847a693cf24dda466e54ccf902f5c79 authored over 5 years ago by Pavel V. Dimens <[email protected]>
fix summary()

1dfc50ce2b61728a4aff85d2d7dc31de44e78c33 authored over 5 years ago by pdimens <[email protected]>
Update README.md

79083f3125ea6c2ebbcecb5741a6647ba6d7bd6f authored over 5 years ago by Pavel V. Dimens <[email protected]>
Update README.md

18c8e538f2e4015e765c9a7e24e3f439b066093c authored over 5 years ago by Pavel V. Dimens <[email protected]>
Merge branch 'master' of https://github.com/pdimens/PopGen.jl

033593b362c23f98d1ba45b5b8ea7e026ebc9a76 authored over 5 years ago by pdimens <[email protected]>
swap icons

71a9db6ae91fa2287db9e9ce27139a14ce63b1dc authored over 5 years ago by pdimens <[email protected]>
Update README.md

62fcdac87b24cdc66eb0c658e6e67e7f734a05bf authored over 5 years ago by Pavel V. Dimens <[email protected]>
Update README.md

2c50316cdd29debeeef98e693438d4494bb6f0bc authored over 5 years ago by Pavel V. Dimens <[email protected]>
add icons

900dd489dbd9d765214d7555d11e82cda85a8a07 authored over 5 years ago by pdimens <[email protected]>
Merge branch 'master' of https://github.com/pdimens/PopGen.jl

c77e60659c945216a617d55918c55a68b57ef64e authored over 5 years ago by pdimens <[email protected]>
Create docs.png

57673dd349599fef0fe0d0a2c54a8568e78494ee authored over 5 years ago by pdimens <[email protected]>
Update README.md

d19f1dfdfd0b98ef91f2b2746a08caab579ec01d authored over 5 years ago by Pavel V. Dimens <[email protected]>
Update README.md

27e746201680aea7e781801c7822a2dc0f6b84da authored over 5 years ago by Pavel V. Dimens <[email protected]>
add slack channel, revise docs

1eb7b373c47f7c51fe76d262298c8f95651a2daf authored over 5 years ago by pdimens <[email protected]>
add allele freq, remove base.show

revise docs

a5f558b2084a4de6eec9b72f4b379b09ad79ee18 authored over 5 years ago by pdimens <[email protected]>
update docs, swap commands

f4641b9c302a69e38e07384071b3b8193df9df20 authored over 5 years ago by pdimens <[email protected]>
revamp docs organization

1128b5c12433c8474bdf21890e71c13479645e73 authored over 5 years ago by pdimens <[email protected]>
Update PopObj.jl

099838abf6de70dfab49adc603d8375f9bf047cd authored over 5 years ago by Pavel V. Dimens <[email protected]>
Update Manipulate.jl

896eac56c3e40371277b569e385301cfc67dffa1 authored over 5 years ago by Pavel V. Dimens <[email protected]>
Create AlleleFreq.jl

2fb8aa3c3e69f0c82da3c912ba296094d4fbe526 authored over 5 years ago by Pavel V. Dimens <[email protected]>
Delete mapboxplot.jl

15c1f1538cbb2780e0ed6c81fc2e5d329be9ad95 authored over 5 years ago by Pavel V. Dimens <[email protected]>
Create mapboxplot.jl

160916e32ce8e659d67e11584206bda3b5baa908 authored over 5 years ago by Pavel V. Dimens <[email protected]>
Merge branch 'master' of https://github.com/pdimens/PopGen.jl

6186d9d5a368f89f7fbcdfc777ebb8e4abd7e80b authored over 5 years ago by pdimens <[email protected]>
add functions nancycats() and gulfsharks()

e20303f2a97d4f036bff29ed3e58a8f005a1b830 authored over 5 years ago by pdimens <[email protected]>
Update .gitignore

cf09df77f1c734b50f0345e6577d9c69860c537d authored over 5 years ago by Pavel V. Dimens <[email protected]>
fix genepop horizontally stacked loci parsing

9fdc8da3f81521c749d890849a3f6a63c23c1185 authored over 5 years ago by pdimens <[email protected]>
add datasets.jl

734c4ef4ede47d34f2f976eefe650e5ec7b0498b authored over 5 years ago by pdimens <[email protected]>
Update README.md

a3918c6ff49071f6ab22cbf6997b110c4174fb7b authored over 5 years ago by pdimens <[email protected]>
update docs

bbffb35b86f2587adc06bca8e76a31a1149f2fb0 authored over 5 years ago by pdimens <[email protected]>
update docs

ca29ec3adf11a905b7c2f4d32b8322626fbdfa7b authored over 5 years ago by pdimens <[email protected]>
Merge branch 'master' of https://github.com/pdimens/PopGen.jl

3ffcad9d717c86e354faa619681e1106d8d51248 authored over 5 years ago by pdimens <[email protected]>
remove site from Master, export genotypes

b8dac80c3dab62df685d31ef5cc5951a5fea7e9f authored over 5 years ago by pdimens <[email protected]>
Update .gitignore

97eefbb06e6ae6b5337bf6d7b1007bf756a8a231 authored over 5 years ago by Pavel V. Dimens <[email protected]>
touch up docs

f2ab11ad626199dd4726acc2ad56e149c8813410 authored over 5 years ago by pdimens <[email protected]>
Update README.md

779177531a003e5bf0e95dcc40e0d6d8576029c3 authored over 5 years ago by Pavel V. Dimens <[email protected]>
Update README.md

4906a43cc3d7d11bdf38cad985fade9ae7cf2182 authored over 5 years ago by Pavel V. Dimens <[email protected]>
Update README.md

e7abee8ae154a3a1d543b2a1ed91ad5a0c76ffc7 authored over 5 years ago by Pavel V. Dimens <[email protected]>
Merge pull request #3 from pdimens/dev

Dev

8574c0ed143a9cb542aa0595c0b90c23ec1f5f8a authored over 5 years ago by Pavel V. Dimens <[email protected]>
format first docs

b98672ff71b106d40c473ea1c271b09977194207 authored over 5 years ago by pdimens <[email protected]>
Delete .travis.yml

24a031fea760f1d871fbb7d155ab2d0eac9c2671 authored over 5 years ago by pdimens <[email protected]>
Merge branch 'master' of https://github.com/pdimens/PopGen.jl

a75355de77264f5e83d722ab360fba88d7a32f6e authored over 5 years ago by pdimens <[email protected]>
start adding docs

89696283270440ead79d2067d3ab950011332993 authored over 5 years ago by pdimens <[email protected]>
Merge pull request #2 from pdimens/dev

Update README.md

dab5ed07b9c6fadc76ec5488417dac2597652676 authored over 5 years ago by Pavel V. Dimens <[email protected]>
Update README.md

dbdf3e82ea86e21701584a2363d8e79a558a7e6e authored over 5 years ago by Pavel V. Dimens <[email protected]>
Merge branch 'master' of https://github.com/pdimens/PopGen.jl

92014f6880c6dbd4ff9a1e2d6be246058ecfff1b authored over 5 years ago by pdimens <[email protected]>
Update testdata.gen

d674eef4b9ad689ab70ab0053fa78b7272b67431 authored over 5 years ago by pdimens <[email protected]>
Update README.md

94223a7a38825db385b51ee2d324434d8fbce13f authored over 5 years ago by Pavel V. Dimens <[email protected]>
remove failed build

0ada67ec2c51eea6ba26285eafc56b74d9385ad4 authored over 5 years ago by pdimens <[email protected]>
Update README.md

7edeac4b8e148a19e09a2df6caa028b4a5d745f1 authored over 5 years ago by pdimens <[email protected]>
Merge branch 'master' of https://github.com/pdimens/PopGen.jl

ed323dc4568b093c489d733449e3f895d9b8b8e5 authored over 5 years ago by pdimens <[email protected]>
Create logo.png

22dd27c28f55c75cdcbc27d81debfff74615d256 authored over 5 years ago by pdimens <[email protected]>
Update .gitignore

da93057e4c734878f8f35c6772aa8aaed11dbbe3 authored over 5 years ago by Pavel V. Dimens <[email protected]>
add first docs

8ff23461648819750dbe7ff304c899ee64e30012 authored over 5 years ago by pdimens <[email protected]>
add deps to Project.toml

93f78fbc87fc7d5cb7add0ac718f13de8d83a4af authored over 5 years ago by pdimens <[email protected]>
add test data

444a6a6c34ead7945abec2fba32aa03a2a18c705 authored over 5 years ago by pdimens <[email protected]>
update plot_locations()

add error for plot_locations() if no location data is present

47af733bc5c400b8ab43bd748f7eb1bc178b2edf authored over 5 years ago by pdimens <[email protected]>
Merge pull request #1 from pdimens/add-license-1

Create LICENSE

9b530fe618a603bfabb82eb57c14d1b32937b4ed authored over 5 years ago by Pavel V. Dimens <[email protected]>
Create LICENSE

2229dba2f0fe60286569508b69a7d3a989805614 authored over 5 years ago by Pavel V. Dimens <[email protected]>
re init repo

3a6dabac3a91bcf42215ce62ba87845ee66e0214 authored over 5 years ago by pdimens <[email protected]>
Create README.md

e522e163072c94a60a2662bee6f79d9ac60c31e8 authored over 5 years ago by Pavel V. Dimens <[email protected]>
Merge branch 'master' of https://github.com/pdimens/PopGen.jl

94e4127b190753509dc00b6159ceb0027ebb46ae authored over 5 years ago by pdimens <[email protected]>
re initialize repo with correct formatting to add package as derived from PkgTemplates.jl

931ce455070810b170cd71107bd5f5fec55cabcb authored over 5 years ago by pdimens <[email protected]>
Files generated by PkgTemplates

de2dcee83b0e884505ee5ff003d6ee9687f8d193 authored over 5 years ago by pdimens <[email protected]>
Initial commit

c00aaa90d42492ca88de755485e397f2f28d0ea3 authored over 5 years ago by pdimens <[email protected]>
Added contributing file

3e0aace0fc2607cbb820db6477f7f2451ca32c64 authored about 9 years ago by Ward9250 <[email protected]>
Initial commit

f745a6b1c0d8ebd7fbe7a2b595f36d666a14b3a1 authored about 9 years ago by Ben J. Ward <[email protected]>