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github.com/BioJulia/FASTX.jl
Parse and process FASTA and FASTQ formatted files of biological sequences.
https://github.com/BioJulia/FASTX.jl
Bugfix: Make trailing FASTQ line optional
jakobnissen opened this pull request over 4 years ago
jakobnissen opened this pull request over 4 years ago
Make writers parametric and buffered
jakobnissen opened this pull request over 4 years ago
jakobnissen opened this pull request over 4 years ago
ERROR: EOFError: read end of file
godkin1211 opened this issue over 4 years ago
godkin1211 opened this issue over 4 years ago
Fix zero-length copy
jakobnissen opened this pull request over 4 years ago
jakobnissen opened this pull request over 4 years ago
Different slicing methods for FASTX.FASTA.sequences produces inconsistent behavior
cjprybol opened this issue over 4 years ago
cjprybol opened this issue over 4 years ago
Delete unused files
SabrinaJaye opened this pull request over 4 years ago
SabrinaJaye opened this pull request over 4 years ago
Run on Julia LTS
SabrinaJaye opened this pull request over 4 years ago
SabrinaJaye opened this pull request over 4 years ago
Inbounds FASTQ parser
jakobnissen opened this pull request over 4 years ago
jakobnissen opened this pull request over 4 years ago
LoadError: UndefVarError: LongSequence not defined during precompilation step
fethalen opened this issue over 4 years ago
fethalen opened this issue over 4 years ago
Remove use of internal `encode_copy!` [DO NOT MERGE]
jakobnissen opened this pull request over 4 years ago
jakobnissen opened this pull request over 4 years ago
Add docs on reading gzipped files
kescobo opened this pull request almost 5 years ago
kescobo opened this pull request almost 5 years ago
CompatHelper: bump compat for "Automa" to "0.8"
github-actions[bot] opened this pull request almost 5 years ago
github-actions[bot] opened this pull request almost 5 years ago
add FASTA.identifier(record) example in docs
dehann opened this pull request about 5 years ago
dehann opened this pull request about 5 years ago
Bug in `Reader` with stream
Zymergen-phaverty opened this issue about 5 years ago
Zymergen-phaverty opened this issue about 5 years ago
Unexpected behaviour when reading FASTA files with read!(reader, record)
harryscholes opened this issue about 5 years ago
harryscholes opened this issue about 5 years ago
Is FASTX.jl really only compatible with julia 1.1?
blaiseli opened this issue about 5 years ago
blaiseli opened this issue about 5 years ago
Implement generic methods for commonly used functions and export them
harryscholes opened this pull request over 5 years ago
harryscholes opened this pull request over 5 years ago
Implement hashing and equality for Records
harryscholes opened this pull request over 5 years ago
harryscholes opened this pull request over 5 years ago
Handle case where input is a TranscodingStream.
blaiseli opened this pull request over 5 years ago
blaiseli opened this pull request over 5 years ago
Reading fastq from TranscodingStream
blaiseli opened this issue over 5 years ago
blaiseli opened this issue over 5 years ago
Release version 1.1
SabrinaJaye opened this issue over 5 years ago
SabrinaJaye opened this issue over 5 years ago
Add copyto! methods for copying record data to BioSequences
SabrinaJaye opened this pull request over 5 years ago
SabrinaJaye opened this pull request over 5 years ago
copyto!
SabrinaJaye opened this issue over 5 years ago
SabrinaJaye opened this issue over 5 years ago
Release version 1.0
SabrinaJaye opened this issue over 5 years ago
SabrinaJaye opened this issue over 5 years ago
BioGenerics compat line prevents Pkg from adding
mmattocks opened this issue over 5 years ago
mmattocks opened this issue over 5 years ago
Test issue
SabrinaJaye opened this issue over 5 years ago
SabrinaJaye opened this issue over 5 years ago
Use TranscodingStreams for FASTA
SabrinaJaye opened this pull request almost 6 years ago
SabrinaJaye opened this pull request almost 6 years ago