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github.com/BioJulia/BioSequences.jl

Biological sequences for the julia language
https://github.com/BioJulia/BioSequences.jl

Added organised reference sequence tests

ae031196b6e0b0a167f1d15bb8225165b89ded50 authored over 7 years ago by Ben J. Ward <[email protected]>
Added organised BioSequence tests

840bbe262ad73ee8a860f58e71654a93a3e3308d authored over 7 years ago by Ben J. Ward <[email protected]>
Added tests for the basic operations - copy, length, access, equality etc.

381a634f0d5a3a2798859068d2c0024afa21fd64 authored over 7 years ago by Ben J. Ward <[email protected]>
Added construction and conversion tests

ecf3942c8fb8a3091b3b7dbd51f37fba6458ec01 authored over 7 years ago by Ben J. Ward <[email protected]>
Added tests for symbols

747ded980c5811f6ced57c9ca48ff92eda71a49f authored over 7 years ago by Ben J. Ward <[email protected]>
Added bitparallel site counting

6e77ca6fe9e5161208809d96ad81ad6f27974950 authored over 7 years ago by Ben J. Ward <[email protected]>
Updated fasta module to imprt BioCore, not Bio

4461a442791fed4c190a12a5e9828d413354206d authored over 7 years ago by Ben J. Ward <[email protected]>
Removed old seqrecord type

08faf4e95c285426932fa17be0a823f09ec81c98 authored over 7 years ago by Ben J. Ward <[email protected]>
Added parser modules, and bioseq folder

8a4a8b2c22f05f06b33bfa0fb6447cd5046aa3ef authored over 7 years ago by Ben J. Ward <[email protected]>
Added files minhash.jl, nmask.jl, refseq.jl, and files in src/search/

8c259cc2494efda316854826a569d9134dc64aa3 authored over 7 years ago by Ben J. Ward <[email protected]>
Added demultiplexer.jl and geneticcode.jl

6a46b713a06325b80b45e2a7404af89ea5144078 authored over 7 years ago by Ben J. Ward <[email protected]>
Added composition, eachkmer, and kmer.jl

c0f4c082a2e56eaaed0e7b32abe134f0c0a45d96 authored over 7 years ago by Ben J. Ward <[email protected]>
Added alphabet, bitindex, and sequence.jl

c6adf4094f5816a007259769e7c058a8d340532d authored over 7 years ago by Ben J. Ward <[email protected]>
Added REQUIRE and BioSequences.jl module file.

739ebde2df62480ac0f1b05cfb1c361b50f91514 authored over 7 years ago by Ben J. Ward <[email protected]>
Initial commit

7d3f0ff19516c8dc1f80091268b5714f8aa8ba28 authored over 7 years ago by Ben J. Ward <[email protected]>