github.com/YuLab-SMU/ggtree issues | Ecosyste.ms: OpenCollective

Installation error: Error in get(x, envir = ns, inherits = FALSE) : object 'warning_wrap' not found

HenrikBengtsson opened this issue about 2 years ago

Aligning tip labels in geom_tiplab results in error

egonozer opened this issue about 2 years ago

geom_hilight based on node name [&&NHX:S=CladeName]

francicco opened this issue over 2 years ago

as.treedata creating label.x and label.y columns in some cases

nick-youngblut opened this issue over 2 years ago

gheatmap cuts the top row and last column

PSSchacksen opened this issue over 2 years ago

data formatting for ggheatmap()

nick-youngblut opened this issue over 2 years ago

Expanded docs for geom_tiplab()

nick-youngblut opened this issue over 2 years ago

Error when trying to scale and collaps multiple clades on tree

janstrauss1 opened this issue over 2 years ago

groupOTU adds an extra group called 0

MarekGierlinski opened this issue over 2 years ago

feature: ggrepel-style placement of inset annotations

AlesBucek opened this issue over 2 years ago

Heatmap with foldchange displayed

suekn opened this issue over 2 years ago

Unable to choose "encircle" for unrooted tree

soneill93237 opened this issue over 2 years ago

how to draw stacked column chart

ChenXi1201 opened this issue over 2 years ago

Issue with angled unrooted tree label

PSSchacksen opened this issue over 2 years ago

To better support the visualization of pvclust class using ggtree

xiangpin opened this pull request over 2 years ago

update fortify for pvclust and hclust class-like

xiangpin opened this pull request over 2 years ago

update fortify for pvclust

xiangpin opened this pull request over 2 years ago

branch.length

SolayMane opened this issue over 2 years ago

fix a bug of roundrect layout to support coord_flip and label of geom_tiplab was mapped to other variable in mapping contains when as_ylab is TRUE

xiangpin opened this pull request over 2 years ago

as_ylab in geom_tiplab suppresses custom tip labels

cwhittaker1000 opened this issue over 2 years ago

Error in `vec_as_location()`:

Tsingsjeen opened this issue over 2 years ago

fix bug for geom_hilight when layout is daylight or graph layout function

xiangpin opened this pull request over 2 years ago

Error install ggtree R4.1.3

Kirito-Ma opened this issue over 2 years ago

Error install ggtree R 4.2.1

bullones opened this issue over 2 years ago

adjust the height of hclust-like class with dendrogram layout

xiangpin opened this pull request over 2 years ago

clone the plot environment before assigning layout

xiangpin opened this pull request over 2 years ago

Limit BEAST 95% HPD node date estimates for geom_range plotting of error

ksw9 opened this issue over 2 years ago

fix bug of layoutEqualAngle

xiangpin opened this pull request over 2 years ago

angle not equal in equal-angle layout

li-yq opened this issue over 2 years ago

warning_wrap export

andrewrech opened this pull request over 2 years ago

Installation fails on master with missing, undefined object

andrewrech opened this issue over 2 years ago

how to use ggtree to draw fan-shaped tree with geological time scale

CretaceousBird opened this issue over 2 years ago

gheatmap colnames in italics

Espinosa-Gongora opened this issue over 2 years ago

geom_tiplab better compatible with dendrogram layout

xiangpin opened this pull request over 2 years ago

Add outline to nodepies

LPDagallier opened this pull request over 2 years ago

Error: ! Can't subset `.data` outside of a data mask context.

KyleTDavid opened this issue almost 3 years ago

ggtree collapsed clade+images

grenaud opened this issue almost 3 years ago

R Session Aborted when calling ggtree()

lesserof2weevils opened this issue over 3 years ago

cant combine ggtree with nodepie inset and geological bars from deeptime

oscarIM opened this issue over 3 years ago

Error: C stack usage is too close to the limit (with layout="daylight")

bjmt opened this issue over 3 years ago

Curved clade labels in ggtree using geom_cladelab

megaraptor1 opened this issue almost 4 years ago

clade labels orientation problem with angle = "auto"

FelixErnst opened this issue almost 4 years ago

2D "Phylomorphospace" Plot Request

jonnations opened this issue almost 4 years ago

Show AA leters when using msaplot on a phylogeny

MickAmest opened this issue over 4 years ago

groupOTU fails with cryptic error

FabianRoger opened this issue over 4 years ago

ggtree for dendrograms:MRCA function meets error

LuffyLuffy opened this issue about 5 years ago

Codeml does not produce mlc files, it combines with the output

kdbchau opened this issue over 5 years ago

Feature Request: Adding text/values to gheatmap layers

ghost opened this issue about 6 years ago

Tip Labels cut off in facet_plot

mattbawn opened this issue over 7 years ago

Problems with groupOTU

zh3ngq1n opened this issue over 7 years ago

Problem with label in "fan" plots

AEgit opened this issue about 8 years ago

Re-rooting tree with correct branch support labels

toddknutson opened this issue about 8 years ago

collapse function not working

ctSkennerton opened this issue about 9 years ago

Could not find function "read.raxml"

FluFighterBK opened this issue over 9 years ago