github.com/YuLab-SMU/ggtree commits | Ecosyste.ms: OpenCollective

compatible with tidyr 0.7.0

c4a9912c0814b0bf321fd4686132817ba0646652 authored over 7 years ago by guangchuang yu <[email protected]>

now geom_text2, geom_label2, geom_point2 and geom_segment2 work with ggplot2

6d2ced4fcd58617a4a31a685a5897d8e779d8a13 authored over 7 years ago by guangchuang yu <[email protected]>

update docs

7f332d206029e123f26e2643bfec8c2a534fc241 authored over 7 years ago by guangchuang yu <[email protected]>

jplace

43af8b12963400df4b0372c8082bc502e81630ca authored over 7 years ago by guangchuang yu <[email protected]>

update msaplot

e8b442a306e0c6e75d360e0b86640edb9c1ed5d8 authored over 7 years ago by guangchuang yu <[email protected]>

add extend parameter in geom_cladelabel

353dfa09a0afccdc86301fee9b5c7ed955c5dc5b authored over 7 years ago by guangchuang yu <[email protected]>

update

15ebf734decb40c64b6043b59f7d329444079fc7 authored over 7 years ago by guangchuang yu <[email protected]>

tweets

5c2227bd859bcfcde83eb6e4c8d6cdbb7c85b673 authored over 7 years ago by guangchuang yu <[email protected]>

update svnignore

9b4120bb6da02261470e229795f80e2348ceb898 authored over 7 years ago by guangchuang yu <[email protected]>

update

9f4c8a9956a1e08b61aad256c98ec214ce99716d authored over 7 years ago by guangchuang yu <[email protected]>

update site

09d9e0706c0931faf5e0069a39d78d00b4d6043f authored over 7 years ago by guangchuang yu <[email protected]>

update plot

918ef6be29344d6ac98d28f99cbb707d423d8c1d authored over 7 years ago by guangchuang yu <[email protected]>

update site

689dabc47703e38f1243b70e05cdd0472d67cd2d authored over 7 years ago by guangchuang yu <[email protected]>

Merge branch 'master' of github.com:GuangchuangYu/ggtree

8986acad15fb661f878cf0e2648db4d03a8d5299 authored over 7 years ago by guangchuang yu <[email protected]>

makefile

e9f4129fe3b20823a1a96eb5f88fa64204c3743e authored over 7 years ago by guangchuang yu <[email protected]>

update site

b04dd043189695f3ed195bd71a12857771cb567f authored over 7 years ago by GuangchuangYu <[email protected]>

logo

200d1c639f0723a22b7c99d5d060134f5d169a11 authored over 7 years ago by GuangchuangYu <[email protected]>

logo

48fd0b5060120b13ae31924c6635611f343d7263 authored over 7 years ago by GuangchuangYu <[email protected]>

fixed homepage order

773e11e3659c50317142ee6dfb0c0a3100dbbf3d authored over 7 years ago by GuangchuangYu <[email protected]>

update site

28e26932cf43565c1cd6c3bf9318d10e5b4e143e authored over 7 years ago by GuangchuangYu <[email protected]>

website transit to hugo

69ce68093e6843989acd5b3851cf6ddfbdff3f7c authored over 7 years ago by GuangchuangYu <[email protected]>

update site

98717487334b70b9b2eec5ef976113692ac51ed0 authored over 7 years ago by guangchuang yu <[email protected]>

.Rbuildignore

9e518149043ce84a0a11a8cfb1d33de063340a12 authored over 7 years ago by guangchuang yu <[email protected]>

scaleClade works after calling viewClade

c52339b4b7156faa748a5db5a2df5a5dda61fa60 authored over 7 years ago by guangchuang yu <[email protected]>

bioc git transition

b80c900e0d789668e8e8e68f04fc77496b846050 authored over 7 years ago by guangchuang yu <[email protected]>

update

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@131307 b...

f8d29c47e45f1c80fa579e0be65c3dfda62b8df0 authored over 7 years ago by Guangchuang Yu <[email protected]>

update makefile

3c4c8dcf08458c77c241ada2ce6f43dcbf626c8a authored over 7 years ago by guangchuang yu <[email protected]>

update docs

526565e31ae7eb75e7318b20bd9a7df8a56daf70 authored over 7 years ago by guangchuang yu <[email protected]>

Update README.Rmd

c09952fde72bfbc17a9259b2faf7e7cafcd46ac2 authored over 7 years ago by Guangchuang Yu <[email protected]>

figure

6ed281eda29c6a9aeedf0f2dbbbbba742201573b authored over 7 years ago by guangchuang yu <[email protected]>

update readme

bd204ed4d50f0ca4dba170a65494e470cb7f9298 authored over 7 years ago by guangchuang yu <[email protected]>

Merge pull request #139 from opencollective/opencollective

Activating Open Collective

9e48fc5de071bcaea847f9e1ab60b8396ffe546e authored over 7 years ago by Guangchuang Yu <[email protected]>

Added backers and sponsors on the README

a14cc0f6c0c93d56dd2c3153d1285586dc2c5bcd authored over 7 years ago by Xavier Damman <[email protected]>

Added CONTRIBUTING.md (optional)

ceed16016f2eedd2357e09b83c82c1331a00381c authored over 7 years ago by Xavier Damman <[email protected]>

rotateTreePoints.df(): Moved label tip "angle" update until after whole tree/branch was rotated.

e3ea6fc39803c9b08842e0509049b535eb94a0a9 authored over 7 years ago by JustGitting <[email protected]>

gheatmap supports collapsed tree

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@130759 b...

8d4a8d6a9eea33fe291343eee523fab6ecac1ab0 authored over 7 years ago by Guangchuang Yu <[email protected]>

gheatmap supports collapsed tree

99a73af1942c4d252cc8d003f09bc0dbc0b0ad1b authored over 7 years ago by guangchuang yu <[email protected]>

Pulled from origin (forked ggtree on github) and fixed differences.

Merge branch 'master' of https://github.com/JustGitting/ggtree

# Conflicts:
# R/geom_cladelabel...

de68a7354b1a91722778828e87c87ec8f8730cfe authored over 7 years ago by JustGitting <[email protected]>

Added revised geom_hilight_encircle() function to highlight clades of unrooted trees.

Fixed layoutDaylight ave_change calculation.

Fixed bug in getTreeArcAngles() for cases where th...

9a1c4d17c0c177b2af6b46d9899c3e8e85bbd0ee authored over 7 years ago by JustGitting <[email protected]>

Merge pull request #2 from GuangchuangYu/master

PR from Guang Chuang Yu repo.

3e36c05a7daaea7e0de355ef5ff1e991b021dee5 authored over 7 years ago by JustGitting <[email protected]>

update site

369da5430c0c0c75e2680a780cfe0c0fe39abf07 authored over 7 years ago by guangchuang yu <[email protected]>

Merge pull request #136 from brj1/master

fixed phylo4d ladderizing

00f14550c9ecc4f02cbd59e8153fd3e34a9ecaff authored over 7 years ago by Guangchuang Yu <[email protected]>

fixed phylo4d ladderizing

283713af58868990224e03d203095878650c6801 authored over 7 years ago by brj1 <[email protected]>

now mapping parameter will passed to segment layer in geom_tiplab(align=T) <2017-06-19, Mon>

606bcfe82bbc431537e469cf9663335682eb7684 authored over 7 years ago by guangchuang yu <[email protected]>

geom_cladelabel now support `angle="auto"`

7c29b848fc930a334f7398cc71a1bf3f4cdbc533 authored over 7 years ago by GuangchuangYu <[email protected]>

phylomoji vignette

f1b9814be0c7c3d6be1a1280257a29234b63c180 authored over 7 years ago by guangchuang yu <[email protected]>

bug fixed

e5c097815b0cb3dec5219b0dea571ccaec4e3c05 authored over 7 years ago by guangchuang yu <[email protected]>

update

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@129277 b...

5531c3cd30001f10a7f5d337c7898a6fd0352f10 authored over 7 years ago by Guangchuang Yu <[email protected]>

update docs

5ccecdd03b70f5a5731a79676206547e8b75cff3 authored over 7 years ago by guangchuang yu <[email protected]>

bioc-3.6

367aa25824a18137e33e1593f175c5e9716035ac authored over 7 years ago by guangchuang yu <[email protected]>

bump x.y.z versions to odd y after creation of 3_5 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@129129 b...

cd59690edcd89c77dc0938b0aabe17d75952b507 authored over 7 years ago by Herve Pages <[email protected]>

bump x.y.z versions to even y prior to creation of 3_5 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@129126 b...

5ea8f5647dc91f8df197b38a5e4cea60e6932e42 authored over 7 years ago by Herve Pages <[email protected]>

space

d0916a323cb22193ace23c55a364071f299b5b71 authored over 7 years ago by guangchuang yu <[email protected]>

typo

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@129040 b...

22c6785048f5032af0bb10f426abe1479fb8f7fd authored over 7 years ago by Guangchuang Yu <[email protected]>

new citation

46ee65ffb3d033f6a8976707255426c05b1a6cab authored over 7 years ago by guangchuang yu <[email protected]>

update readme

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@129039 b...

626d91a7bb25a7f8a0007bdeb4f41e14878ffdc3 authored over 7 years ago by Guangchuang Yu <[email protected]>

new citation

3bae345dd8eaed5557bda01b9b1d4eded5ae0bbd authored over 7 years ago by guangchuang yu <[email protected]>

use message instead of cat

b5f020749e801e25500abbfe2f07d235751574a7 authored over 7 years ago by guangchuang yu <[email protected]>

use message instead of cat

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@129038 b...

9c1e0762cdeff67918a6a711323243ed2a74e404 authored over 7 years ago by Guangchuang Yu <[email protected]>

Merge pull request #1 from GuangchuangYu/master

Add updates from GCY ggtree.

7f020e1808fb7b64f19c340d0f7255d50a374fb2 authored over 7 years ago by JustGitting <[email protected]>

typo

f5b8c5eaf9d3b333d0c7768e5b869f5607a7e3c2 authored over 7 years ago by guangchuang yu <[email protected]>

typo

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@128918 b...

208ae7d7d355d904bdbb20d4eda4e8ecf0774097 authored over 7 years ago by Guangchuang Yu <[email protected]>

remove layout.method parameter

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@128917 b...

dfb1835e55b0fe6b1efe7e621da681453ba837d3 authored over 7 years ago by Guangchuang Yu <[email protected]>

remove layout.method

e9896b761d37a6f176e613b892b0165b54414b6a authored over 7 years ago by guangchuang yu <[email protected]>

day light layout

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@128515 b...

98e235d84ab35311ad8a464f9693380b386dc1c0 authored almost 8 years ago by Guangchuang Yu <[email protected]>

fixed R check

a6e5cc92548936fb429f490c8203e3db3513e276 authored almost 8 years ago by guangchuang yu <[email protected]>

update

f1a32e3db0bdba7a989841346f5aab161c3f0a0e authored almost 8 years ago by GuangchuangYu <[email protected]>

Merge pull request #124 from JustGitting/master

Add "daylight" layout method for unrooted trees.

3f542027cbc95ba801cde6568e54e0ba3c1fdc5d authored almost 8 years ago by Guangchuang Yu <[email protected]>

Pull from fork of ggtree.

Merge branch 'master' of https://github.com/JustGitting/ggtree

# Conflicts:
# .Rbuildignore

fb2b245f6e77441ade3e9bb3a67b3ecda8f20e28 authored almost 8 years ago by JustGitting <[email protected]>

gitignore and Rbuildignore have been updated by RStudio. It was not my doing...

d86c9a93044f8baa2293741edae46657d51d6ae1 authored almost 8 years ago by JustGitting <[email protected]>

Added layout.method parameter to ggtree.R to modify behaviour of layout method (unrooted).

Modified method-fortify.R to accommodate layout.method parameter.
Refactored and added various fu...

40f0f07848862ae831a7692d5d388d479bbdcee0 authored almost 8 years ago by JustGitting <[email protected]>

bug fixed

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@127987 b...

001c045dfbf33a6f0295b048d4df55c1987c5798 authored almost 8 years ago by Guangchuang Yu <[email protected]>

bug fixed

6c3d0a213ebba123a58af768ef6d7b4ec93b85d1 authored almost 8 years ago by guangchuang yu <[email protected]>

update readme

420c7b132896ec5eb5add8b296bfc7d2a6f3411a authored almost 8 years ago by guangchuang yu <[email protected]>

update readme

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@127728 b...

05622618f5ede14580fbf449682bd7e08c0cc299 authored almost 8 years ago by Guangchuang Yu <[email protected]>

ggimage

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@127721 b...

c42351bd5bba7900d8009c8b4c82e718604a925f authored almost 8 years ago by Guangchuang Yu <[email protected]>

message for defunct functions

62f9f34e2380eada500096f42cdfdd7def7b32cc authored almost 8 years ago by guangchuang yu <[email protected]>

update docs

147686ada5602150839ae5893129897ba0cfa8ea authored almost 8 years ago by guangchuang yu <[email protected]>

update docs

80d2e12cd275dba2269d35ac25064cce96523a85 authored almost 8 years ago by guangchuang yu <[email protected]>

fixed link

f0152727048a997baab578fa550415dcee9fbd4b authored almost 8 years ago by guangchuang yu <[email protected]>

update url

1b01bebc0416ba270730c21a7d1cd31db5518618 authored almost 8 years ago by guangchuang yu <[email protected]>

new sticker

2d18b912004fd4d0c845073aae69ef1a085512a9 authored almost 8 years ago by guangchuang yu <[email protected]>

new logo using hexSticker

975ee5231617e76ef48ef69d2ba6d304d9594ba0 authored almost 8 years ago by guangchuang yu <[email protected]>

update subview

87286ec97cab80be34cbb826d52c6750c082cf78 authored almost 8 years ago by guangchuang yu <[email protected]>

update description

c72652f9b76de6623556a279e21af668929463ff authored almost 8 years ago by guangchuang yu <[email protected]>

update docs

b07125519172611396cee464da1fb242ee85e067 authored almost 8 years ago by guangchuang yu <[email protected]>

update docs

e5eee6c297d4b8c09e9d45bbabb0d9b8d2b34ed3 authored almost 8 years ago by guangchuang yu <[email protected]>

badge

752ffbb9394dad4456ed1a82a97df0b987872816 authored almost 8 years ago by guangchuang yu <[email protected]>

badge

0bef8892893b2250638dc439f6d3892a8101e6dc authored almost 8 years ago by guangchuang yu <[email protected]>

update docs

975b531a65e788d1e383cfda381f6d062531a963 authored almost 8 years ago by guangchuang yu <[email protected]>

update docs

be66327888c738d666ab4c66c62b1003c8a4cbba authored almost 8 years ago by guangchuang yu <[email protected]>

update feedback

cf61b6c84cef18660a531bc453bd6cc41d06d7b8 authored almost 8 years ago by guangchuang yu <[email protected]>

plot_fantree & plot_fantrees

add1ce2544ad4f6302e82e2211e6925c4d2d5ea7 authored almost 8 years ago by guangchuang yu <[email protected]>

update logo position

eaf7dc56d250f144f7b8b63b1c35583debcc8c6d authored almost 8 years ago by guangchuang yu <[email protected]>

new logo

582f8c0c7e8b46d78b8aad80cc7705ba8a84def0 authored almost 8 years ago by guangchuang yu <[email protected]>

fixed geom_range to support height_0.95_HPD <2017-03-03, Fri>

fb1adc3d46a82cbd68d8d52222b0726ff446f833 authored almost 8 years ago by guangchuang yu <[email protected]>

typo

11f2f21b9e54e42542e848c6ab16b2698cbeabad authored almost 8 years ago by guangchuang yu <[email protected]>

issue template

d91a2dfd6e5d86d323433e26c7742d60d8a5575c authored almost 8 years ago by guangchuang yu <[email protected]>

fixed geom_tiplab(geom="label")

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@127093 b...

885fa7762d5a5e174739f8174b3237c217703b90 authored almost 8 years ago by Guangchuang Yu <[email protected]>

fixed #115

d53108cadf3c66ed6b08da94ad6daed724474d5e authored almost 8 years ago by guangchuang yu <[email protected]>