Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/YuLab-SMU/ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees
https://github.com/YuLab-SMU/ggtree

bump x.y.z versions to even y prior to creation of RELEASE_3_7 branch

4d06152be9ce3deb30c3cf7da42d072ec3c97bcd authored over 6 years ago by vobencha <[email protected]>
typo

69479fafd7ce4631c24df80ee448a81b1f1f4459 authored over 6 years ago by guangchuang yu <[email protected]>
reexport read.astral

0b803ba8023fc545c9a0b497df86bc1aa3505523 authored over 6 years ago by guangchuang yu <[email protected]>
reexport read.iqtree

7d3e7190684d6fe6901b035e841cb1d879e0a825 authored over 6 years ago by guangchuang yu <[email protected]>
import read.iqtree

8caaa268f697267fd12406548a7f2c24766a9302 authored over 6 years ago by guangchuang yu <[email protected]>
update docs

1a318d4d0a0a861c579e2d2284c38df76e32aa1a authored almost 7 years ago by guangchuang yu <[email protected]>
fixed links

2ea8a3b5b8e4a8e22f7ef694e22a261155510933 authored almost 7 years ago by guangchuang yu <[email protected]>
rm todo

a783517816a64175d8558cac2c5a497aad1323d4 authored almost 7 years ago by guangchuang yu <[email protected]>
optimize geom-treescale

8407d2ab6978602742801e7478eb3c6ba2225481 authored almost 7 years ago by guangchuang yu <[email protected]>
add new contributor

1e2cf3a515247e9ae6afadb97d9c3615f08406d2 authored almost 7 years ago by guangchuang yu <[email protected]>
Merge pull request #170 from heavywatal/patch-1

Add a contributor

3675e87a67b31841e35334ef20362841b64e6719 authored almost 7 years ago by Guangchuang Yu <[email protected]>
update tweet img

92fc6b78e229db1686e01646594f23b542dc363e authored almost 7 years ago by guangchuang yu <[email protected]>
update link

d25915cc853c0d7adc83182da4d46a6615d8d281 authored almost 7 years ago by guangchuang yu <[email protected]>
remove website

deb8e67de32cdf491a7fb884e60e54bd9451ef78 authored almost 7 years ago by guangchuang yu <[email protected]>
mv site to http://guangchuangyu.github.io/software/ggtree

71a7404d3d57a30b241e77daa22e3870cbdd419a authored almost 7 years ago by guangchuang yu <[email protected]>
mv site to http://guangchuangyu.github.io/software/ggtree

7918c8b0b3176d9456297ac0c7215b0eb0da0aeb authored almost 7 years ago by guangchuang yu <[email protected]>
redirect site

168c0843b37b8cf105b9f26284022e3e9babdcc9 authored almost 7 years ago by guangchuang yu <[email protected]>
Add a contributor

@heavywatal refactored layoutDaylight in #165 and #169

9263a7df984109fcca85071d9c7753c49ec86957 authored almost 7 years ago by Watal M. Iwasaki <[email protected]>
Merge pull request #169 from heavywatal/refactor-daylight-2

Refactor layoutDaylight part 2

7c3f061c5c45f57390286bac43094b24fc1201ce authored almost 7 years ago by Guangchuang Yu <[email protected]>
Refactor layoutDaylight part 2

- Cache frequent and expensive lookup such as `df$x`
- Exclude nodes in vectorized manner before...

fc03966cd4482ea9b664729e9eae3a002403b546 authored almost 7 years ago by Watal M. Iwasaki <[email protected]>
geom_tiplab2 works with mapping = aes(subset) defined by users

40a372c1f873d4cf08fd648cb4e1a11399dbdfcc authored almost 7 years ago by guangchuang yu <[email protected]>
fixed #167

d7cfc5a4247c9d5029eaa9a91d56b66e6b4b3ec3 authored almost 7 years ago by guangchuang yu <[email protected]>
Merge pull request #165 from heavywatal/refactor-daylight

Refactor layoutDaylight and its related functions

1b7776222dce98959ee5661308739a320150303f authored almost 7 years ago by Guangchuang Yu <[email protected]>
treeio in Remotes field

114673e72c91f3ecf96f5e9a70c3e458d82bc3d5 authored almost 7 years ago by guangchuang yu <[email protected]>
new citations

b4d1bf997974d35744fa6c4efc548088bd0388ca authored almost 7 years ago by guangchuang yu <[email protected]>
Refactor layoutDaylight and its related functions

- Replace loops with dplyr::mutate or purrr::map
- Return consistent values from getChild.df and...

2fa23352c6afe02797e5446e285f7a9667b7f6e6 authored almost 7 years ago by Watal M. Iwasaki <[email protected]>
update tweets

582cb21ebe549e465a11b8d3513b62bb7c9fc029 authored almost 7 years ago by guangchuang yu <[email protected]>
update geom_tippoint

a67ffa2864fa0671f315cc2edd1bafee004019bc authored almost 7 years ago by guangchuang yu <[email protected]>
update makefile

d64c3b9541eb5e1d26930f2ef6d17e6ed2453242 authored almost 7 years ago by guangchuang yu <[email protected]>
support passing `aes(subset)` in geom_nodepoint

897c2ec4a6b88cad871e54b4b7f2ba1b75ea4c1d authored almost 7 years ago by guangchuang yu <[email protected]>
update docs

229ac9edcdf784062da4b204cf4fb72b899bd451 authored almost 7 years ago by guangchuang yu <[email protected]>
update readme

9b62981d60bba840e2391025ad4aecd52f321158 authored almost 7 years ago by guangchuang yu <[email protected]>
update man

770a038d06cd8dcfd4285cf59172cbaacafa1ea6 authored almost 7 years ago by guangchuang yu <[email protected]>
fine tune y position after flip; flip compatible with collapse

cf8b3bfe0a47de72924d422c0f1ca2a2c1150c10 authored almost 7 years ago by guangchuang yu <[email protected]>
typo

9b4dd3ff27be600efdeb9cb13e095d603b52b6ae authored almost 7 years ago by guangchuang yu <[email protected]>
update citation

3708794e4104fe9e2509be45598d8e65d2b83fae authored almost 7 years ago by guangchuang yu <[email protected]>
new citation

3f398f6a9ec19d55170b94af5d59173a447e51df authored almost 7 years ago by guangchuang yu <[email protected]>
update readme

55824e6560d5f65b2661a2cd1ea3e2ec7f4fab77 authored about 7 years ago by guangchuang yu <[email protected]>
update readme

a5086475acd984cc06afa72b63e0414cd1226d8f authored about 7 years ago by guangchuang yu <[email protected]>
update vignettes

0266c285dce27b34ccd251e7e3d99d66dc5f615a authored about 7 years ago by guangchuang yu <[email protected]>
update makefile

38cc4744f32f0aae668dd7d70d8face95b0d3e85 authored about 7 years ago by guangchuang yu <[email protected]>
update makefile

ead856b219230d0c974fc73f2ec26348437c413b authored about 7 years ago by guangchuang yu <[email protected]>
update docs

42e49c5df53e3d0ef92e33c6741f699befbc6ac1 authored about 7 years ago by guangchuang yu <[email protected]>
add example of print tree with specific angle in treeVisualization vignetee

2794a0e5ad54319bd7d546c785bc28e36281436e authored about 7 years ago by guangchuang yu <[email protected]>
extra vignette in homepage

6cda60e2ba2b7c6c91880fc393a94379bb49b189 authored about 7 years ago by guangchuang yu <[email protected]>
treeVisualization vignette

149acb32b24c72726ed619d0c07683ddf9acd823 authored about 7 years ago by guangchuang yu <[email protected]>
unrooted layout

b681f0b46becf0bc41e9921700b2f9c64b71359a authored about 7 years ago by guangchuang yu <[email protected]>
update ggtree vignette

68c3e3afaf6b021fe3c540d79fca3b75acd82a64 authored about 7 years ago by guangchuang yu <[email protected]>
update vignette

3be56e900dfe0f4105bed88adfbdfbfc456bb8ad authored about 7 years ago by guangchuang yu <[email protected]>
blog entry

2b01a9120a622d83e973d9144aa5eea59d9ae352 authored about 7 years ago by guangchuang yu <[email protected]>
typo

b2a9ecd46cc139d66133216dc85f015eb31b079c authored about 7 years ago by guangchuang yu <[email protected]>
update docs

887bd02c82e2db14ec550491a518565bf9bab0c9 authored about 7 years ago by guangchuang yu <[email protected]>
version

f504471e05b5d19e326c0b69195a507ee04a0132 authored about 7 years ago by guangchuang yu <[email protected]>
AAbin

486d4456879ec08e97dffc47d23b71268548346a authored about 7 years ago by guangchuang yu <[email protected]>
update msaplot to use DNAbin/AAbin

015f54b5ac8586d0523a27630c4615bce469152e authored about 7 years ago by guangchuang yu <[email protected]>
clean up code

14ff9149b23d4d4dd68cca144c0c35464491bbef authored about 7 years ago by guangchuang yu <[email protected]>
clean up code

eb57da3ec9c6c5328d3377946261d106cd2934f9 authored about 7 years ago by guangchuang yu <[email protected]>
update according to treeio and tidytree

fcbe901fcfb90eb272abfed1334fe55ed17ba4c7 authored about 7 years ago by guangchuang yu <[email protected]>
comment out code

0369424fbbf0017871f4adeca5f8d682634405d1 authored about 7 years ago by guangchuang yu <[email protected]>
update readme

a78528ef51337945f2ca6289f0037bb88928089f authored about 7 years ago by guangchuang yu <[email protected]>
tidytree

99048963dbdb90a4960d132d4592abd5123c183d authored about 7 years ago by guangchuang yu <[email protected]>
move source code to tidytree

452376180ffa9e2775c6268f75e39f700c5603df authored about 7 years ago by guangchuang yu <[email protected]>
remove paml_rst, codeml_mlc, codeml and jplace fortify methods according to the change of treeio (v = 1.3.3)

6be958c59cdd5f93a2b6488e3b976c45f96899a9 authored about 7 years ago by guangchuang yu <[email protected]>
keep tree order #157

595ee49e1a1f53901d03ad3ff1476ab5dea0bb3a authored about 7 years ago by guangchuang yu <[email protected]>
using treedata object to store jplace tree

93e6a44b6551d11618dd49880f7f5aab9c0f84c1 authored about 7 years ago by guangchuang yu <[email protected]>
remove beast object support as read.beast output treedata object in treeio <2017-12-05, Tue>

13af7bc0a2451e7d37c28d7fe10b05178ca42587 authored about 7 years ago by guangchuang yu <[email protected]>
remove theme_transparent

9125fc57211a23611889f406e1ae1309dd66bee6 authored about 7 years ago by guangchuang yu <[email protected]>
ggtree with image files

ea38627aa87f0153d66c2c2fd377e3ccdf133cd8 authored about 7 years ago by guangchuang yu <[email protected]>
update docs

65f83e77430cffe17c31d69583f5586428f07ca5 authored about 7 years ago by guangchuang yu <[email protected]>
update docs

9be59aec1cdc975650b75a8011b1d6c4556aa4b6 authored about 7 years ago by guangchuang yu <[email protected]>
test

c4387283aac4c77b418efa696eee8b6b6176e084 authored about 7 years ago by guangchuang yu <[email protected]>
geom_tiplab enhancement

d50bc7b6d5b05ce29a2f580c52637f90fe56686b authored about 7 years ago by guangchuang yu <[email protected]>
plea to against bmc

6640ed240103ef81a42bce0d5983c6cd648aa02c authored about 7 years ago by guangchuang yu <[email protected]>
mrsd for treedata object

b7381e839d9100c785ddbc95f8779d068b3f65f5 authored about 7 years ago by guangchuang yu <[email protected]>
add new citation

8f72546019d05361d06ca4133f9b3ae3c9f91f0f authored about 7 years ago by guangchuang yu <[email protected]>
update site

36a0f6db2d3868216f51ab0225f3a1665e6dcc63 authored about 7 years ago by guangchuang yu <[email protected]>
update docs

92207a3b517759e39996164dfffdae118e62e5e4 authored about 7 years ago by guangchuang yu <[email protected]>
update docs

7edb7c2a067a6b6e208b6762b0972357e2e1c5ec authored about 7 years ago by guangchuang yu <[email protected]>
bump x.y.z versions to odd y after creation of RELEASE_3_6 branch

ff03e4c3880eed922a29188bb5adb6c36e0aae28 authored about 7 years ago by Hervé Pagès <[email protected]>
bump x.y.z versions to even y prior to creation of RELEASE_3_6 branch

3475de11e1322f881c03e4f432e717ce1c51e35a authored about 7 years ago by Hervé Pagès <[email protected]>
update docs

0b103e34a5afd30df31bb7d2224ede4c7c3ee87a authored over 7 years ago by guangchuang yu <[email protected]>
change MRCA_internal parameter name

07063f95a74aee6b9c965efae96f9c99c6d1006c authored over 7 years ago by guangchuang yu <[email protected]>
new gallery image

d30f6545d96780221b521a76d6927c494e51fc06 authored over 7 years ago by guangchuang yu <[email protected]>
gallery image

963e3994734e75a0640e88aef0627dc99a068ab0 authored over 7 years ago by GuangchuangYu <[email protected]>
fixed R check for #152

9653250666d21c4b8596bf6cbb273bf1e88f7293 authored over 7 years ago by guangchuang yu <[email protected]>
Merge pull request #152 from JustGitting/master

Add annotation functions for unrooted tree layouts and other fixes.

f4f64c2f22a388eec6cfd2b07f208ffc5bc7c052 authored over 7 years ago by Guangchuang Yu <[email protected]>
Merged changes from upstream into origin branches.

Merge remote-tracking branch 'upstream/master'

# Conflicts:
# R/geom_cladelabel.R
# R/geom_hili...

7790e533be4949b88619c9fbf563317abaffdc79 authored over 7 years ago by JustGitting <[email protected]>
Updated tidytree::rotateTreePoints() to rotate labels correctly.

1cfeeff11973e7538ec7b18c3d79ad5cbaf33026 authored over 7 years ago by JustGitting <[email protected]>
update site

536ea93ca4d100b3e320e5acb7789496bb6cdf70 authored over 7 years ago by guangchuang yu <[email protected]>
typo

59b046ef13bfa2a4b5bf2c67d25cc9c6e1aeb148 authored over 7 years ago by guangchuang yu <[email protected]>
set_hilight_legend

f25c1cdddf98036233c62d164be0a9c275a12cbd authored over 7 years ago by guangchuang yu <[email protected]>
geom_motif #148

363c0555cd4c7ca0671b951319409a70f79234e5 authored over 7 years ago by guangchuang yu <[email protected]>
update docs

30a6bb4155f9e128dbe129699fe53ee7ed12d4b1 authored over 7 years ago by guangchuang yu <[email protected]>
new tweets

75a48130de6238274ddf3ad8cf18ca2ff7d73e04 authored over 7 years ago by GuangchuangYu <[email protected]>
update makefile

c84682c4cf4440f38dfb00a0f250818e244e2f38 authored over 7 years ago by guangchuang yu <[email protected]>
git conflict

98aa9e002f39e62b1281715f5bd40e974fab8e29 authored over 7 years ago by guangchuang yu <[email protected]>
test

13a0b1a2471d3d18e078ab5d81719a9309aea60d authored over 7 years ago by guangchuang yu <[email protected]>
na.rm=T

3ae1fec8d5a9ae21bd7e2bfb860b124fd2f5067f authored over 7 years ago by guangchuang yu <[email protected]>
update docs

f0e199adfff316ab21c13d8ddee23ad8dafb63b9 authored over 7 years ago by guangchuang yu <[email protected]>
new citation

8a0054610de30e165089577d886adf6427ea0a7a authored over 7 years ago by guangchuang yu <[email protected]>