github.com/YuLab-SMU/ggtree commits | Ecosyste.ms: OpenCollective

fixed test

4acfcd82d2b24233797da93203bc29dcd15e054b authored almost 6 years ago by Guangchuang Yu <[email protected]>

remove get.offspring.df & get.offspring.tip

1dd645ce9e7646457f640edd9ddf68a9a2be59d0 authored almost 6 years ago by Guangchuang Yu <[email protected]>

reduce dependency

dca8f8ff4bdb778b56ffa254690d0ad18950c52a authored almost 6 years ago by Guangchuang Yu <[email protected]>

facet_widths

4c9fb8bbf2c0da19256e07e4e75b3439247cd1b5 authored almost 6 years ago by Guangchuang Yu <[email protected]>

fixed R check

bbbd9abcf02827ff949fa3b1f52f00b3b241b992 authored almost 6 years ago by Guangchuang Yu <[email protected]>

clean up code

5ea346ce881e0d8c582d8a8e557314f86112e64c authored almost 6 years ago by Guangchuang Yu <[email protected]>

typo

9416b852753df0957f812840b9b5eda74b37d9b3 authored almost 6 years ago by Guangchuang Yu <[email protected]>

update citation

e72823b4d76a8a01f6191a1e0bca1c529cbf78e3 authored almost 6 years ago by Guangchuang Yu <[email protected]>

update citation

cb272bfc6eaf888aa18642a1343044be234af8ae authored almost 6 years ago by Guangchuang Yu <[email protected]>

bug fixed of theme_tree2(),

see also #218

2b9d5e9df3c50bdc0588087fbdc87e7974f30ab0 authored almost 6 years ago by Guangchuang Yu <[email protected]>

mv rescale_tree to treeio

a0cd85ce1c818275faf14757a4ade0f7f5629acd authored almost 6 years ago by Guangchuang Yu <[email protected]>

update readme

ce5f23d29f74b052d0b9edbccfd049994f693c7b authored almost 6 years ago by Guangchuang Yu <[email protected]>

new MRCA methods

b6760093755cb83bac6ce00ff5f8ac12b96b42d7 authored almost 6 years ago by Guangchuang Yu <[email protected]>

update docs

9c4b3c86d42e5c733452638c646e0388b44bf141 authored almost 6 years ago by Guangchuang Yu <[email protected]>

ggtree book

c69c6bd71d8305622503c881e41b15d8ebcd1379 authored almost 6 years ago by Guangchuang Yu <[email protected]>

update readme

3bc5befac996168eba98fda2734c2c89699ac134 authored almost 6 years ago by Guangchuang Yu <[email protected]>

Update README.Rmd

6d0b84518f128d8828fc720937703d065e4a1012 authored almost 6 years ago by Guangchuang Yu <[email protected]>

update docs

e45b2f26d12a50eaa3358182deb1e3e702452136 authored almost 6 years ago by Guangchuang Yu <[email protected]>

mv reroot to treeio

912582703c430c95acc8efe6b48e0d5871b0da6a authored almost 6 years ago by Guangchuang Yu <[email protected]>

bug fixed

b7f2b5a1bde1ffd7bc43e6f33ae726cf63fb9829 authored almost 6 years ago by Guangchuang Yu <[email protected]>

readme

d003c59c488678d3a3e6ed86a5374dc724815399 authored about 6 years ago by Guangchuang Yu <[email protected]>

update readme

18618ecb883ac0428f17e75d865322736d16405a authored about 6 years ago by Guangchuang Yu <[email protected]>

update readme

901c0107f8fa5685534f1235b38a1e533a563531 authored about 6 years ago by Guangchuang Yu <[email protected]>

Merge branch 'master' of github.com:GuangchuangYu/ggtree

b7ae0d00ba216a1f5acb6c23d1515d1bf63f7b2c authored about 6 years ago by Guangchuang Yu <[email protected]>

update doc

54e7ba2958dd23e603b67bf9b107f61262224764 authored about 6 years ago by Guangchuang Yu <[email protected]>

compatible with tibble 2.0.0

21cbdbaef070934dbd68ce33e3e9e3b8d6098e02 authored about 6 years ago by Guangchuang Yu <[email protected]>

Merge pull request #215 from brj1/yu

re: parameterize MAX_COUNT in the daylight layout.

5a1870780348383242fe7964a5f4531f04ca80c3 authored about 6 years ago by Guangchuang Yu <[email protected]>

added MAX_COUNT to layoutDaylight documenation

35e8c189a6a65c125f2e8176d22aba55286c3f4b authored about 6 years ago by brj1 <[email protected]>

Merge pull request #213 from brj1/yu

parameterize MAX_COUNT in the daylight layout.

5aa9cec45cf99a41eac2bf693ece2b536ea17f24 authored about 6 years ago by Guangchuang Yu <[email protected]>

update docs

e97f14c3d08cb7fac7125b34a312e254f76eb933 authored about 6 years ago by Guangchuang Yu <[email protected]>

Merge branch 'daylight' into yu

4e253d3d920108e5bd757f7940b410906ec456dc authored about 6 years ago by brj1 <[email protected]>

Merge pull request #211 from brj1/yu

Reroot treedata

34a876ebf3f64e4ef9beb05ca3b0d62e27a481d2 authored about 6 years ago by Guangchuang Yu <[email protected]>

made MAX_COUNT in layoutDaylight parameterized

216e89e6b6c17d699118085bc3002533598f6214 authored about 6 years ago by brj1 <[email protected]>

Merge remote-tracking branch 'origin' into yu

afbca024d99bca851895f2a983441e9f9349ca00 authored about 6 years ago by brj1 <[email protected]>

update object@extraInfo in reroot as well (@GuangchuangYu gave template for code change

dc3fb9fe9465dc19ff02186bfcc4a2b025b59b14 authored about 6 years ago by brj1 <[email protected]>

fixed tips counting; added warning message; label unlabeled nodes/tips

de7c3290b8ea699dd5546f4130a41208ccbfe1bb authored about 6 years ago by brj1 <[email protected]>

bug fixed

3d027bb4997c3f94c856624629ea92eede198d0a authored about 6 years ago by Guangchuang Yu <[email protected]>

fixed node reordering

2f2d600147079b40a6da1c1bbc8790525141156f authored about 6 years ago by brj1 <[email protected]>

Merge branch 'master' of https://github.com/GuangchuangYu/ggtree into yu

16e9e2ce3aa7387b5dd9e81c9465081549adf3bb authored about 6 years ago by brj1 <[email protected]>

better msg

c8bacdb1253990079297d4912fa46453f43b7540 authored about 6 years ago by Guangchuang Yu <[email protected]>

update make file

68b25915e7c5266a8b1a90e23ea7d80b7a7e1888 authored about 6 years ago by Guangchuang Yu <[email protected]>

fixed seqinr issue

f9e38ceaa64b817fda74e7bff47fdca2197ab4af authored about 6 years ago by Guangchuang Yu <[email protected]>

Merge remote-tracking branch 'origin/master' into yu

2b5e7d5deb2bc5f11b53e6777bed3e6223cfc197 authored about 6 years ago by brj1 <[email protected]>

update docs

f46cfbcf158c8151d355c4baa297482d8bc79276 authored about 6 years ago by Guangchuang Yu <[email protected]>

Merge remote-tracking branch 'origin/master'

dabd1b0138574c94c4a74ea03d1c60cbe69b39bd authored about 6 years ago by Guangchuang Yu <[email protected]>

Merge pull request #209 from Bisaloo/docs

Add missing layout value in geom_tree docs

401dc5235c40a9e8f19974c21cdd38cde90400e0 authored about 6 years ago by Guangchuang Yu <[email protected]>

Make ggtree inherit params docs from geom_tree

This reduces the need to edit the documentation at several places when
the code is updated and re...

dc21901500602803d2732c7b5eed5d3cb40b0dc1 authored about 6 years ago by Hugo Gruson <[email protected]>

Add missing layout value in geom_tree docs

c12865387c6321c23e7d83f12f104cc7463d7131 authored about 6 years ago by Hugo Gruson <[email protected]>

bump x.y.z versions to odd y after creation of RELEASE_3_8 branch

c3c3d71bd8b22453e9d5ed6b0a5556f0d53de927 authored about 6 years ago by vobencha <[email protected]>

bump x.y.z versions to even y prior to creation of RELEASE_3_8 branch

eaaa0fb3be760fd4ffc98f07034bdf4f777503f5 authored about 6 years ago by vobencha <[email protected]>

update citation

76dd59a1625c85973dc90a17a99370536f0c2da2 authored about 6 years ago by Guangchuang Yu <[email protected]>

add citation

38554c25e22969a8f4cab0e2e1ac927e7bc4251f authored about 6 years ago by Guangchuang Yu <[email protected]>

added reroot fr treedata type

6171d4dcbfdd5176fa009b5861a00581bcf81677 authored about 6 years ago by brj1 <[email protected]>

remove gap in circular layout of gheatmap, #204

919f823e85d5796718f498fafdcd0e76a5eaa8cd authored about 6 years ago by Guangchuang Yu <[email protected]>

update docs

b91f9a977cc1d71698ea76e62f8cb42c7232f826 authored about 6 years ago by Guangchuang Yu <[email protected]>

Merge branch 'master' of github.com:GuangchuangYu/ggtree

a73ad871fa7054af679c3476fb0843d1eb52d35e authored about 6 years ago by Guangchuang Yu <[email protected]>

update

2835d1d51d5ef930c4d1f9a098fbbc5ffa081201 authored about 6 years ago by Guangchuang Yu <[email protected]>

Merge pull request #201 from brj1/yu

made data usable with treedata in 'equal_angle' and 'daylight' layouts

937b382ff809fdccad00cc2893e49b67fb459eff authored about 6 years ago by Guangchuang Yu <[email protected]>

made data usable with treedata in 'equal_angle' and 'daylight' layouts

642e2cf81f2fb24df703aef42fea12e032bdbe52 authored about 6 years ago by brj1 <[email protected]>

update docs

6b80a861c93726769c485ca31129639a4a6670ed authored about 6 years ago by Guangchuang Yu <[email protected]>

Merge pull request #198 from Bisaloo/patch-1

Update doc to explain the function of some arguments

ae04d0c987b560d9e4fa88b9702c4859e8054a29 authored about 6 years ago by Guangchuang Yu <[email protected]>

Update doc to explain the function of some arguments

908f3028fa8a3929c4f468fcd654c5e05271de4b authored about 6 years ago by Hugo Gruson <[email protected]>

update affiliation

5ffee357b3f492f903c796a4448c8248640c3650 authored about 6 years ago by Guangchuang Yu <[email protected]>

bump version up

e84c1f7e52e1a4dea05d3cbe26ee85fcc79aa1d5 authored about 6 years ago by Guangchuang Yu <[email protected]>

update docs

92847e81acf59a0c37ebe127ee6bf926a5d5fd63 authored about 6 years ago by Guangchuang Yu <[email protected]>

Merge pull request #197 from vmikk/vmik_fix

Fix examples with `sample.nwk`

f5de8f168d814c7a7749a0a63f80db8a7b18c143 authored about 6 years ago by Guangchuang Yu <[email protected]>

just in case fix examples in experimental function gplot

0d6d177a11614f9ffb98bbbfac607103a024ffc0 authored about 6 years ago by Vladimir Mikryukov <[email protected]>

fix examples with `%<%` and `%<+%` operators

19ba2fd5b15d02ad8076710bec6b397e53fe9ada authored about 6 years ago by Vladimir Mikryukov <[email protected]>

rootedge support additional parameters, #195

da41bd9e35aa4d4b9a9a9a2c061ec2f546e1e503 authored over 6 years ago by Guangchuang Yu <[email protected]>

update facet_labeller

5660a0638359fc653421efb0140a75baa400456a authored over 6 years ago by Guangchuang Yu <[email protected]>

facet_labeller

2c3a0a961921006dd3e61a9049f406b8532b540b authored over 6 years ago by Guangchuang Yu <[email protected]>

bug fixed of viewClade

c372741411811e2e496e6c29b0e79cd0dcb2f89a authored over 6 years ago by Guangchuang Yu <[email protected]>

update makefile

e0740bdaa2320bfeb85fdffa38b9c9fe34610cc4 authored over 6 years ago by Guangchuang Yu <[email protected]>

fixed #187

38dda350cc87eba606cf03b3e06746195b815048 authored over 6 years ago by guangchuang yu <[email protected]>

update rd

6cd5161c44593c9c4c9529a90bae890070f530f2 authored over 6 years ago by guangchuang yu <[email protected]>

remove warning

cee6015088baf342f2d6bb538eb838737fc25937 authored over 6 years ago by guangchuang yu <[email protected]>

facet_plot

fb0208744161783e246154a20ca2fa241d975306 authored over 6 years ago by guangchuang yu <[email protected]>

extend parameter in geom_cladelabel and geom_strip

41c82a6c6e69c092928686c145bfe35d0ffbf836 authored over 6 years ago by guangchuang yu <[email protected]>

geom_nodelab2

0d475eee195ded4a54d8a4041a521b52dfa5c4f7 authored over 6 years ago by guangchuang yu <[email protected]>

reexport fortify

4ec5577743530395fe0dcfefe2385ef9e71c6a70 authored over 6 years ago by guangchuang yu <[email protected]>

update readme

6280febe56b4698921aa607c3c153f34f8a4d917 authored over 6 years ago by guangchuang yu <[email protected]>

bump up version

4995cf2a4b91f220200d429fd7474d7741f28a68 authored over 6 years ago by guangchuang yu <[email protected]>

compatible with ggplot2 v2.2.1 & 2.2.2

5ae491271f07b3b75dbf29b424c0f9502feb8994 authored over 6 years ago by guangchuang yu <[email protected]>

Merge pull request #185 from Bisaloo/patch-1

Fix links to issues in contributing guide

073c8f02188e276ac50f7db57d28aeac3cb9f917 authored over 6 years ago by Guangchuang Yu <[email protected]>

Fix links to issues in contributing guide

84b9eba1215312690c3ec723781ee0a95e56b205 authored over 6 years ago by Bisaloo <[email protected]>

bug fixed

d887edbe0ac2cadd99fbb5427d2f30da94e510db authored over 6 years ago by guangchuang yu <[email protected]>

geom_rootedge

445bdce389b8db6e0569cbf2ca651a01183fe31c authored over 6 years ago by guangchuang yu <[email protected]>

typo

9f5ec41a7caab3a8f96efcb0ca0900fea8745e3c authored over 6 years ago by guangchuang yu <[email protected]>

clade_name paramter in collapse

591825ec7fbaaae9559d5a9df09016039133b870 authored over 6 years ago by guangchuang yu <[email protected]>

bug fixed

e4f92cb5f8d094a031a5eef8a5ace1275fe43b55 authored over 6 years ago by guangchuang yu <[email protected]>

update news.md

77a6d06d16e55ff14d65914a7f129d307d6218e4 authored over 6 years ago by guangchuang yu <[email protected]>

geom_tiplab(parse="emoji") compatible with upcoming ggplot2 v=2.3.0

8dab51926310dc57448bae1beac504cd4f664aae authored over 6 years ago by guangchuang yu <[email protected]>

update readme

50d52ad765739d8ad68a356b86aee4d88a3369e7 authored over 6 years ago by guangchuang yu <[email protected]>

version bump

e183e7d14f90a799a69f8298751dbde2600caf93 authored over 6 years ago by guangchuang yu <[email protected]>

Merge pull request #178 from abichat/master

Style and typo on vignettes

cbb39f3a58826bfc8b5d38eace33ba0d12060545 authored over 6 years ago by Guangchuang Yu <[email protected]>

Style and typo treeManipulation.Rmd

3d59ccf278dd8f628024b91b55195a8363141b38 authored over 6 years ago by abichat <[email protected]>

Style and typo treeAnnotation.Rmd

96eb234cbb356f9ef53eb88857f87e6ecce070d5 authored over 6 years ago by abichat <[email protected]>

Style and typo treeVisualization.Rmd

c8b7211ae771bba76362f7222b306957df8affa7 authored over 6 years ago by abichat <[email protected]>

compatible with ggplot2-dev

50b227f105fe73d522f388859676520727e2a4c4 authored over 6 years ago by guangchuang yu <[email protected]>

bump x.y.z versions to odd y after creation of RELEASE_3_7 branch

d67d5674f403ecce918fdb0483ca3e5ae04a95a5 authored over 6 years ago by vobencha <[email protected]>