Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/YuLab-SMU/ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees
https://github.com/YuLab-SMU/ggtree

gitee backup

b57ec7d6c6b75da82067ff309f996dcff8c598de authored about 5 years ago by Guangchuang Yu <[email protected]>
update makefile

c2cfbee3ef926b17716c35d5d9da77a5a70edb92 authored about 5 years ago by Guangchuang Yu <[email protected]>
fixed warning

db6d5e27e4345dd14a735a467e1924c28aa6c00a authored about 5 years ago by Guangchuang Yu <[email protected]>
bump x.y.z version to odd y after creation of RELEASE_3_10 branch

bd8358d2cdd45c36bf45faa38fe1faedb40dd4c1 authored about 5 years ago by Nitesh Turaga <[email protected]>
bump x.y.z version to even y prior to creation of RELEASE_3_10 branch

e2dcb204e2f976b7b2e0d5f8f6bd52ec13fb0b83 authored about 5 years ago by Nitesh Turaga <[email protected]>
bug fixed of geom_hilight

e8f6f87a75b1652337fb527b242ee4edb63e1d45 authored about 5 years ago by Guangchuang Yu <[email protected]>
clean up docs

3780dc24ccd2895061ae71c86f29b194daa85b01 authored about 5 years ago by Guangchuang Yu <[email protected]>
arrow

73ce663ab64c5090b7f6830b3cc773b4bd79f400 authored about 5 years ago by Guangchuang Yu <[email protected]>
reexport arrow and unit

b22e59a5078d63b7ec3b29948d5a6e8a04a26e7e authored about 5 years ago by Guangchuang Yu <[email protected]>
fortify for tree graph

813822468bfa3c8fe38f54feaa0d70512bb0baac authored about 5 years ago by Guangchuang Yu <[email protected]>
update docs

61b9be0f290166449f0e5552c936bf70dace8ec5 authored over 5 years ago by Guangchuang Yu <[email protected]>
Merge pull request #255 from brj1/master

small ggdensitree modifications

48eeb766925ff8a920bb0b8008e4fec51fc794b3 authored over 5 years ago by Guangchuang Yu <[email protected]>
Changes to ggdensitree

removed branch.length default
dangle -> align.tips
added branch length to example
added new examp...

7a94bf43b81e0b927c805a2eaaaae0b59b614812 authored over 5 years ago by brj1 <[email protected]>
ggdensitree

87cb27be4e914ab686ec1f34398e9e6b559f4768 authored over 5 years ago by Guangchuang Yu <[email protected]>
Merge pull request #253 from brj1/master

Added ggdensitree method

3002ff9654ada93e7f312faed244efdc65bbf542 authored over 5 years ago by Guangchuang Yu <[email protected]>
Added ggdensitree method

ggdensitree can plot lists of phylogenetic trees (or list of treedata) such that
- tips are ali...

a88f71efebe8e6c3216735160f3c73a513b9b5f9 authored over 5 years ago by brj1 <[email protected]>
Merge pull request #252 from xiangpin/master

Un-exported function import

0b6af499127532ca11f91494efc77bfd18c69b0f authored over 5 years ago by Guangchuang Yu <[email protected]>
use offspring.tbl_tree

13d5b831d2c01be292269261f11943a5143aacb1 authored over 5 years ago by xiangpin <[email protected]>
use offspring.tbl_tree

e2ffb81c202bf55b747a2126e7ee97151bddf5d2 authored over 5 years ago by xiangpin <[email protected]>
use offspring.tbl_tree un-exported funtion

a2fcb7855a8cb97d849071e399eaa1c49b59af44 authored over 5 years ago by xiangpin <[email protected]>
Merge pull request #1 from YuLab-SMU/master

update from original repository

4d73f130ba47f4dbbc75a2c3a2f132b04d7d2eaf authored over 5 years ago by xiangpin <[email protected]>
offsprint

ef819358a6aec117df08de1248e02b506f17a913 authored over 5 years ago by Guangchuang Yu <[email protected]>
1.99.0

eb32147bfe528e5eb7f8b791f7a1760de913a560 authored over 5 years ago by Guangchuang Yu <[email protected]>
update

e0bc35fb1a799c7444f81165694835eee339c55a authored over 5 years ago by Guangchuang Yu <[email protected]>
fortify methods for agnes, diana and twins

dce1205a81d522b3195eb0ac3c43e222d35419be authored over 5 years ago by Guangchuang Yu <[email protected]>
update layouts

ddc10afb43a56be1335736b799321ae669f4d04b authored over 5 years ago by Guangchuang Yu <[email protected]>
update

ae3324c4f0b0679d3cd50b6decc5728e61b0437a authored over 5 years ago by Guangchuang Yu <[email protected]>
geom-hilight

f31fbd752be545c09e2c4e6a38497d477968e528 authored over 5 years ago by Guangchuang Yu <[email protected]>
enable color parameter for geom_strip

ea8ffdd5b89bfa3d03cd22e7d5efe5bc0f324282 authored over 5 years ago by Guangchuang Yu <[email protected]>
geom_motif

2c14b064f1b4d38da2b1f0ba6ab501b1984e1d83 authored over 5 years ago by Guangchuang Yu <[email protected]>
geom_strip

ee07f0c3cee31004bda60e68f3f87b658176a576 authored over 5 years ago by Guangchuang Yu <[email protected]>
update docs

2f52fc6bd6fffdb248e21a3b4dc4bfde643bebe0 authored over 5 years ago by Guangchuang Yu <[email protected]>
update citation

27e7a82e480330d0e37a2cb9b09d81fe1773cc8a authored over 5 years ago by Guangchuang Yu <[email protected]>
support phylog

cee2cc2536d71df05af948d0f5097e65c1f40b18 authored over 5 years ago by Guangchuang Yu <[email protected]>
update geom_balance

c17c3eab27aaf9352db69067df41d05859f3f558 authored over 5 years ago by Guangchuang Yu <[email protected]>
geom_cladelabel now supports unrooted tree

aff471e16721dd6b639b47d0d7e3607d5c9034a3 authored over 5 years ago by Guangchuang Yu <[email protected]>
restore rootnode = TRUE

222e9fd63eee9ccfcca8a50106411dc20867ec4c authored over 5 years ago by Guangchuang Yu <[email protected]>
remove legend of theme_inset

dbf4890a1de512df201f1dbe0cb146bbe1cd4b93 authored over 5 years ago by Guangchuang Yu <[email protected]>
update docs

5b4b5ea15de3bc3da1b1880d9544de97a9602497 authored over 5 years ago by Guangchuang Yu <[email protected]>
update docs

6540f9cb1a39cc681b817f297039b1955376ca53 authored over 5 years ago by Guangchuang Yu <[email protected]>
update docs

4fca06a695e1df4f2f3398764083a0265939a6c1 authored over 5 years ago by Guangchuang Yu <[email protected]>
update readme

a27c977fa7de24de65187c11a979009a69f85ead authored over 5 years ago by Guangchuang Yu <[email protected]>
upgrade nodeid and define nodelab methods

5a65217162162c5bb01f5ceb6a13be5dc8a411f4 authored over 5 years ago by Guangchuang Yu <[email protected]>
remove gzoom function

4f72df8662d33272d730d5b996a003d6011ea628 authored over 5 years ago by Guangchuang Yu <[email protected]>
rootnode parameter

4d023b21070d9eb0f7146c4276bcc4660731180e authored over 5 years ago by Guangchuang Yu <[email protected]>
fixed R check of gheatmap and revert theme_tree to based on theme_bw

fd3b93fe53f526b4f1ed8e8f07d1641473185d99 authored over 5 years ago by Guangchuang Yu <[email protected]>
Merge pull request #244 from fionarhuang/master

change the author list

0e247f4dde8cd04d7a23856fc34d4a12ba85ff45 authored over 5 years ago by Guangchuang Yu <[email protected]>
add one more person to the author list

ec279f05dfc0ec4df1eea5978d6189d7646fa6f0 authored over 5 years ago by fionarhuang <[email protected]>
Merge pull request #243 from fionarhuang/master

display heatmap on collapsed nodes

12b0a3e1494d85b177e6ec2f573e8c561fd34b1a authored over 5 years ago by Guangchuang Yu <[email protected]>
display heatmap on collapsed nodes

a9b668e5f0c89083bec106ac70b8e1507af47bfb authored over 5 years ago by fionarhuang <[email protected]>
update theme

827cd9ecf6924b9f49f63a246fcab91942542c8b authored over 5 years ago by Guangchuang Yu <[email protected]>
update theme

ecf50e8f71fe07d78b0b998f24bafe9168f9e1ed authored over 5 years ago by Guangchuang Yu <[email protected]>
support of dendrogram

2dbfeb5eba2d561c28536bdb0b93a558f7d18467 authored over 5 years ago by Guangchuang Yu <[email protected]>
support of dendrogram

0956944e8a746132026b063ca679921c2311c6ec authored over 5 years ago by Guangchuang Yu <[email protected]>
tree layout

d3057fa170056353ea8a72a7dd20590250c3f63c authored over 5 years ago by Guangchuang Yu <[email protected]>
update geom_range and scale_x_range

238bfee33e60252d1c1494be5640705463d82599 authored over 5 years ago by Guangchuang Yu <[email protected]>
geom_range

1418c0535c1d22d6d97c17f09e24503a1303cff9 authored over 5 years ago by Guangchuang Yu <[email protected]>
update expand

d25f3fbb99bf7b366b94630170d7d62ea697349f authored over 5 years ago by Guangchuang Yu <[email protected]>
allow multiple collapse for different mode

e6dc6e3841cb5eb53785b6cda0119a112ffa9637 authored over 5 years ago by Guangchuang Yu <[email protected]>
mode paramter in collapse

7f09bee0de633ea4b6783597b639f141ce78ad6b authored over 5 years ago by Guangchuang Yu <[email protected]>
fixed #235

b2d1f675a0adf0121f20bf8857497dd66ccab39e authored over 5 years ago by Guangchuang Yu <[email protected]>
geom_tiplab

585c3bd9bba88f521d48ce9cf070155f1df2307f authored over 5 years ago by Guangchuang Yu <[email protected]>
geom_inset

6661d84bf97e4dbc9a275d3e4e71960420d3e3be authored over 5 years ago by Guangchuang Yu <[email protected]>
facet_data

4ef142fd0051bff287d1b9499098ea4d0808c896 authored over 5 years ago by Guangchuang Yu <[email protected]>
clean up code

2da156b9501a367c75976637e36e9dbd8ab9d01a authored over 5 years ago by Guangchuang Yu <[email protected]>
fixed #237

cd1fefefd2878b174cf3495e35978ce9514d2b20 authored over 5 years ago by Guangchuang Yu <[email protected]>
continuous color for normal geom_segment, WIP

206570ed5098bc2c6a8b503992b3ab864991e906 authored over 5 years ago by Guangchuang Yu <[email protected]>
do nothing if collapsing tip, #23

940d9cb2cac57c6257ee898b304caa6563e77e51 authored over 5 years ago by Guangchuang Yu <[email protected]>
change default value

e896aaae49506d5f303616b9dd37b30d6323657e authored over 5 years ago by Guangchuang Yu <[email protected]>
support color character

5e9fb59ab2d520ce8b059c784a35affa01dede3e authored over 5 years ago by Guangchuang Yu <[email protected]>
clean up code

7456bd91bd88a853b95192ea642fb58bc9f417fd authored over 5 years ago by Guangchuang Yu <[email protected]>
Merge pull request #236 from Bisaloo/docs

Add crosslinks between geom_tiplab / geom_tiplab2 and geom_cladelabel/geom_cladelabel2

9ad7178bb6fa83a7192308b576fc087183ee4157 authored over 5 years ago by Guangchuang Yu <[email protected]>
Cross link geom_cladelabel and geom_cladelabel2

c072cd2e8975e31c8b5f930cfb613b871d337151 authored over 5 years ago by Hugo Gruson <[email protected]>
Fix typo

27797b0e0d1407ff237cd98c6f16654b4e568d71 authored over 5 years ago by Hugo Gruson <[email protected]>
Cross link geom_tiplab and geom_tiplab2

6dc7c89828534ca2ec0786e7b683d1f994d9b006 authored over 5 years ago by Hugo Gruson <[email protected]>
update

fa5dab0440e0744c15695d48b28b8a0fc9e66f4d authored over 5 years ago by Guangchuang Yu <[email protected]>
continuous parameter for slanted and unrooted layouts

425be9e21e0b049a9535d463cdc41a25457786a4 authored over 5 years ago by Guangchuang Yu <[email protected]>
continuous parameter in geom_tree

eeac7735c2573a3203e607a70821ae9ea1519e5e authored over 5 years ago by Guangchuang Yu <[email protected]>
update docs

d0e8671fcf10756c4e75fb29be69bca106fa1093 authored over 5 years ago by Guangchuang Yu <[email protected]>
bioc 3.9

6f1a9cfc57f50451b877c3eea9eb130bfba654cb authored over 5 years ago by Guangchuang Yu <[email protected]>
update url

3fbeced3cbc40dec5f7ee85432e12d0bae2a5601 authored over 5 years ago by Guangchuang Yu <[email protected]>
root.position parameter

98a43cd28cfd54b22dbe4e273f2ece0bbdfd609b authored over 5 years ago by Guangchuang Yu <[email protected]>
change parameter order

15f7a58aa2e531b7af116a8259619201d48d0c61 authored over 5 years ago by Guangchuang Yu <[email protected]>
adjust parameter order

d2766ff981dbdeecd7241943283732cbdd0c3430 authored over 5 years ago by Guangchuang Yu <[email protected]>
geom_facet

0d658ee768bfda1ef9ca1b69b51ee0ac522d1698 authored over 5 years ago by Guangchuang Yu <[email protected]>
update readme

7e19d6eb65afcb24db2ba1e93f4ae131fed1aa77 authored over 5 years ago by Guangchuang Yu <[email protected]>
update namespace

dbed66ac1584af91be9ac8b90594c929a84f4795 authored over 5 years ago by Guangchuang Yu <[email protected]>
optimize xlim_expand

28e1b2dbe2d32df3b787d71e96f2f1a8d3a1d61e authored over 5 years ago by Guangchuang Yu <[email protected]>
remove duplicated code

94ef548885c341df620307f94ba8718003a8f4ce authored over 5 years ago by Guangchuang Yu <[email protected]>
update scale_x_ggtree

e5c982fbb2a2691680535e874356247275d5f815 authored over 5 years ago by Guangchuang Yu <[email protected]>
xlim-expand supports ggplot2

cc1400565439bb45da99fc9e04b7b588ff06b2b7 authored over 5 years ago by Guangchuang Yu <[email protected]>
legend_title parameter in gheatmap

c00aac1c13b98fd115c367063d07ee157cb97691 authored over 5 years ago by Guangchuang Yu <[email protected]>
Merge remote-tracking branch 'origin/master'

3a1745d97c55ee0cecdd8cd953757b72db304774 authored over 5 years ago by Guangchuang Yu <[email protected]>
bump x.y.z versions to odd y after creation of RELEASE_3_9 branch

4df950d6f56dfe559c82a5a74afb26cab5719172 authored over 5 years ago by Nitesh Turaga <[email protected]>
bump x.y.z versions to even y prior to creation of RELEASE_3_9 branch

c8ffaff613d6db9e322caba322b94e90f2db8881 authored over 5 years ago by Nitesh Turaga <[email protected]>
compatible with range is NULL in `geom_range`

21dc5c8362077a75ab01389b77ee2f218885162a authored over 5 years ago by Guangchuang Yu <[email protected]>
update docs

a628c0a3c769a340681fc4a06f07a08c06a04145 authored over 5 years ago by Guangchuang Yu <[email protected]>
bug fixed for geom_hilight, in tidytree

7566a86dd00d0aaa67be984c7eb19e57afff1fc3 authored almost 6 years ago by Guangchuang Yu <[email protected]>
clean up code

a0450f4817403ae35e7b9ac87c916e02a7493973 authored almost 6 years ago by Guangchuang Yu <[email protected]>
fixed R check

373adc0067e10a1b879e0f81ed4e3a1ba5091580 authored almost 6 years ago by Guangchuang Yu <[email protected]>