Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/YuLab-SMU/ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees
https://github.com/YuLab-SMU/ggtree

Merge pull request #326 from xiangpin/master

add geom_hilight2 function to support aesthetic mapping

f830588e3da963636021566352eecb266e617cc4 authored over 4 years ago by Guangchuang Yu <[email protected]>
update docs

7154b3ec81dfeaa47084a4cb802814a7e9fae7f5 authored over 4 years ago by Guangchuang Yu <[email protected]>
fix the order of panel

b384d2cec27b6c9a79a6e4712bc8311d4a113bec authored over 4 years ago by xiangpin <[email protected]>
update doc

df425fe848c5bdd60975212f8ba68415471d8ccb authored over 4 years ago by xiangpin <[email protected]>
Merge branch 'utemp'

d095902ad981b06a62ba241674549b52ee4ba5d5 authored over 4 years ago by xiangpin <[email protected]>
new export and importFrom

46df22c8cb20960c38e90c45e6e63fd41fdf7def authored over 4 years ago by xiangpin <[email protected]>
add geom_hilight2 to support data.frame

25efec92b0c576ef7ef7de72e89149d4fd531af8 authored over 4 years ago by xiangpin <[email protected]>
add method of hilight2

7c589b03deecfb86e217ca0b75c55f886e7d9203 authored over 4 years ago by xiangpin <[email protected]>
update facet_width according to new version of ggplot2

588ef61d69ba6f5a6234b1a985fe1d188d6b1fa2 authored over 4 years ago by Guangchuang Yu <[email protected]>
Merge pull request #325 from xiayh17/master

Two minor amendments

9e9af367793c58d23fb06c42069f77a446d009f4 authored over 4 years ago by Guangchuang Yu <[email protected]>
geom_taxalink supports aes mapping

9541f27d8b27d291b7fcc22f4e3568b970c2e711 authored over 4 years ago by Guangchuang Yu <[email protected]>
Merge pull request #324 from xiangpin/master

add geom_taxalink2 to support data.frame and mapping as input

c0bb44dc9630d8c5ced2a2fb76a506e0ae74aba2 authored over 4 years ago by Guangchuang Yu <[email protected]>
panel- to panel-1-

7986435b826c3f81c434c53f44ad2234fa4bc99b authored over 4 years ago by xiayh17 <[email protected]>
delete branch.length

8998ddaf4d658bf8059c7c1d538f3a5dfe6da750 authored over 4 years ago by xiayh17 <[email protected]>
new export

3856fee34fef92656df352453816fb92dd41545b authored over 4 years ago by xiangpin <[email protected]>
add geom_taxalink2 support data.frame and mapping

2eb98326f6f6f7e7763fdafdd0026567fdb363a0 authored over 4 years ago by xiangpin <[email protected]>
add taxalink method and tiplab support inward_circular

32ae21fef707d2bc9cc8ba641ee9db6d397a4ce2 authored over 4 years ago by xiangpin <[email protected]>
update curve layer

86c96e682d1bddf2e8c926978e6521f585736250 authored over 4 years ago by xiangpin <[email protected]>
layout-inward-circular

76e422ba26f6d6bc4360ee953441079e3f844690 authored over 4 years ago by Guangchuang Yu <[email protected]>
layout_inward_circular

3c2714022e0783ca6d1fd96ba791101ec3006eaf authored over 4 years ago by Guangchuang Yu <[email protected]>
update docs

c2041046df48e21ca8b469f51862954defe086f0 authored over 4 years ago by Guangchuang Yu <[email protected]>
Merge pull request #323 from xiangpin/master

change the orientation of curve taxa link when layout is circular.

9b3873b1ea930f1cb66eb1c8c244fa268f05931e authored over 4 years ago by Guangchuang Yu <[email protected]>
Merge branch 'temp'

06ac5bf07f063330c900b47f929ca953f45774f5 authored over 4 years ago by xiangpin <[email protected]>
import alpha from scales

0fa9bd58043008407022ddf0fde9f0fd05a9b5f4 authored over 4 years ago by xiangpin <[email protected]>
add outward parameter and xexpand to offset

4c532361368ad96cce18edc71c39a2cdd0071273 authored over 4 years ago by xiangpin <[email protected]>
update geom_taxalink method

57da4c72383b4146a6160ce804f9e19379cc3588 authored over 4 years ago by xiangpin <[email protected]>
update docs

d01c60a9ca98c21dc04fa519983836f1e48275b4 authored over 4 years ago by Guangchuang Yu <[email protected]>
Merge pull request #321 from xiangpin/master

update geom_taxalink to support circular layout tree

3d4754e5ee4a2b878ed77559f68fbafc6bd8c2a8 authored over 4 years ago by Guangchuang Yu <[email protected]>
optimize the method to calculate curvature

16a1d725198a3b04bf0e840acc8b7dbe0593c2aa authored over 4 years ago by xiangpin <[email protected]>
update doc

c93aa0990941fda871a11977ccc442e0bba336f2 authored over 4 years ago by xiangpin <[email protected]>
update version and docs

075b9623b76340e71b10630735bedeb5df888996 authored over 4 years ago by xiangpin <[email protected]>
new import

c29f9927eeb49e3c33f48484e515a3482665415d authored over 4 years ago by xiangpin <[email protected]>
support polar coordinate for taxalink

58de8a3d1c865a05eb40003ae991824d2bd0d158 authored over 4 years ago by xiangpin <[email protected]>
update rd, ggplot2 is 3.2.2 and roxygen2 is 7.1.1

635243a8ff5f9db7dcf07d9342dfca923e25d762 authored over 4 years ago by xiangpin <[email protected]>
Merge pull request #316 from Takkoona/patch-1

add 'Phylogenetics' to biocViews

560ba1185b260e5ef01e61ab202ba4589c3c9b4b authored over 4 years ago by Guangchuang Yu <[email protected]>
Add 'Phylogenetics' to biocViews

'Phylogenetics' is endorsed as valid BiocViews by Bioconductor.

d8161e0cc8d56a9cba894bbf600d282211d95ed5 authored over 4 years ago by Chengyang Ji <[email protected]>
fortify method for pvclust

3a653ad1ef1d0f377e7e69c336f93d4cd7be4d82 authored over 4 years ago by Guangchuang Yu <[email protected]>
Merge pull request #312 from xiangpin/master

Add dot parameters for geom_hilight and more detail message of warning for extendto

440df4da417d9ec494a3f9d342ecb9ba2fd9d9cf authored over 4 years ago by Guangchuang Yu <[email protected]>
update doc

f9efc7c33904fac62eb27b9ed7b1e56526b85c2d authored over 4 years ago by xiangpin <[email protected]>
add dot parameter for geom_rect and more details of warnings of extendto

8729953938371133f4ea532acde820ab2404acf2 authored over 4 years ago by xiangpin <[email protected]>
update adjust_cladelabel_angle

1a1f9c2907dbd4d5deef68c93223774d846dcd07 authored over 4 years ago by Guangchuang Yu <[email protected]>
Merge pull request #310 from xiangpin/master

keep original angle when horizontal is TRUE

62f0208f7dc6244c0609e7f6cdafbe2bba9dbde6 authored over 4 years ago by Guangchuang Yu <[email protected]>
keep original angle when horizontal is TRUE

4ef53e98f4fa65a9b1fd55f053fba3c50629f4a0 authored over 4 years ago by xiangpin <[email protected]>
update docs

5083fe00d3cd044da93a611b739bfe093a5c3baa authored over 4 years ago by Guangchuang Yu <[email protected]>
Merge pull request #309 from xiangpin/master

modified the angle of clade labels.

06c6ccdad7905ba8c9c3781a574f8dfff2711650 authored over 4 years ago by Guangchuang Yu <[email protected]>
add version and update log of version

eeb52f3af26b5f8ff32917c846319a5052952f3c authored over 4 years ago by xiangpin <[email protected]>
modified the angle of clade labels and add horizontal parameter

47e2bd9fa072eb276766a001cc7d29f6b0873eb8 authored over 4 years ago by xiangpin <[email protected]>
new release 3.11

207991e42bae86e1cefb7f86333517039f17f2a4 authored over 4 years ago by Guangchuang Yu <[email protected]>
bug fixed

ecf2419f73a91cc973e27682a0cccfab8d15f2ca authored over 4 years ago by Guangchuang Yu <[email protected]>
bump x.y.z version to odd y following creation of RELEASE_3_11 branch

2295c8ca8c2a63bfaf1bb26d6964b034872d566a authored over 4 years ago by Nitesh Turaga <[email protected]>
bump x.y.z version to even y prior to creation of RELEASE_3_11 branch

942efe9a16d509174a6c7c6fc4f2676c6bc4d09f authored over 4 years ago by Nitesh Turaga <[email protected]>
geom_tiplab() works with unrooted layout, #292

f6dd1c4189c7e59f77195b388dbe34f92296e753 authored over 4 years ago by Guangchuang Yu <[email protected]>
parent method

76f68aeeb45ad7c10aa1e149a09ecf6373da212d authored over 4 years ago by Guangchuang Yu <[email protected]>
child #287

54a04a60a421187da7719b213d3d93b8f65e749e authored over 4 years ago by Guangchuang Yu <[email protected]>
bug fixed

20d22abeb7db6025afc066c0ad9936c76607b68b authored over 4 years ago by Guangchuang Yu <[email protected]>
na.rm = TRUE, #289

5e2806b637890172bf1cc5036e15b2ee8d623edb authored over 4 years ago by Guangchuang Yu <[email protected]>
bump version

db0a8e0bee9b99a45ccd1fa63a799079f0d757d9 authored over 4 years ago by Guangchuang Yu <[email protected]>
bug fixed of layoutEqualAngle

53ab3069fe8ba6c6f2d779a1d5388f4e639de65b authored over 4 years ago by Guangchuang Yu <[email protected]>
bug fixed of calculating inset width and height, #289

fd0b1062c87e72701a234f74595f3993ed70203e authored over 4 years ago by Guangchuang Yu <[email protected]>
import xrange from aplot

e5fdd3b320b6135620bbd13eca60523622dfafdf authored over 4 years ago by Guangchuang Yu <[email protected]>
import aplot

71f958dff3d40a36a8ac343abe3f2e400a449ab8 authored over 4 years ago by Guangchuang Yu <[email protected]>
bump version

87c70cadf8030989013f56a3c95597ecaec4548e authored over 4 years ago by Guangchuang Yu <[email protected]>
aplot

670ec6afe8d7b592712f9df3a19c5ec28bf41b76 authored over 4 years ago by Guangchuang Yu <[email protected]>
update citation

ccc2178699a6fd7831fd6acfc1552cec1e2f429c authored over 4 years ago by Guangchuang Yu <[email protected]>
remove mutate_

f3952913340937b3271a6bcd84ef9bcc3d7ec06e authored over 4 years ago by Guangchuang Yu <[email protected]>
update docs

cd229bf60e5f7422129fadd8f4ee7002b2e2cc0a authored almost 5 years ago by Guangchuang Yu <[email protected]>
Merge pull request #275 from DAWells/develop

Allow user to specify gheatmap font

d2d88dd1dcb3b653c1f5d8d75ee2795de77b7fbd authored almost 5 years ago by Guangchuang Yu <[email protected]>
update url

36740da2840e2a3ef412ba7323bbfc6e1174d050 authored almost 5 years ago by Guangchuang Yu <[email protected]>
new citation

f9c9f2f8ebc2a1eb43263f18b598b07200af9c6a authored almost 5 years ago by Guangchuang Yu <[email protected]>
rm space

56752aa0cf75cafb89a1b9c26529b70289476319 authored almost 5 years ago by Guangchuang Yu <[email protected]>
bug fixed, #282

a0667cd4fb20fb33d3584659003ce8d5bfb27fae authored almost 5 years ago by Guangchuang Yu <[email protected]>
import expansion

210d5a6696c232845413eb6b1efa6018c31929f8 authored almost 5 years ago by Guangchuang Yu <[email protected]>
Merge pull request #279 from brj1/master

if yscale is set do not scale y

7f0588e9e591959fbb9a9520c6ae08c300edfe2b authored almost 5 years ago by Guangchuang Yu <[email protected]>
update makefile

c9910e6997004e304af57e72db68c2e8b53399a3 authored almost 5 years ago by Guangchuang Yu <[email protected]>
if yscale is set do not scale y

b6872f2e55788e29f6ab7e9631678362fa244cc2 authored almost 5 years ago by Brad Jones <[email protected]>
Merge pull request #274 from brj1/master

fixing incorrect links

0c4489dad678cbe051fd16a088a4c8865aa1fb53 authored almost 5 years ago by Guangchuang Yu <[email protected]>
fixing incorrect links

2e66b3dc2e6eff6968d44f69296b9de91c897a49 authored almost 5 years ago by brj1 <[email protected]>
bug fixed

ceb13aecf11f41dcf963136ca28a42ff411281e6 authored almost 5 years ago by Guangchuang Yu <[email protected]>
Merge pull request #273 from brj1/master

Unrooted layout fix

dad7eaae7e9d6ab64adbbbfc6724b2724fdaeb97 authored almost 5 years ago by Guangchuang Yu <[email protected]>
Replaced ape::unrooted.xy code with function call

642f657b0b39bc679c348f9e2927a08e671cfa7d authored almost 5 years ago by brj1 <[email protected]>
added new layout 'ape' which is a copy of the 'unrooted' type in ape::plot.phylo

b82756047f66eaf8d38a5ba4a49c8616bc58900c authored almost 5 years ago by brj1 <[email protected]>
unrooted layouts (daylight and equal_angle) now use 1:1 aspect ratio

101a0ad5f2d81f55a77ca623b63fd44faa217f28 authored almost 5 years ago by brj1 <[email protected]>
Allow user to specify gheatmap font

d4a71bf76581863d8b7f2956a583070135c5c683 authored almost 5 years ago by DAWells <[email protected]>
geom_highlight

d903c8a1f0ef7460d75316558a3b218b3b6d723a authored almost 5 years ago by Guangchuang Yu <[email protected]>
Merge pull request #267 from brj1/master

new ggdensitree example

cfbe803d05d6812796f94fd48f0bf7a8045cb600 authored about 5 years ago by Guangchuang Yu <[email protected]>
merged; fixed example; changed Brad Jones email

e201d4b9077c2a073a06035a9b3efc5ee7ba0715 authored about 5 years ago by brj1 <[email protected]>
added example to ggdensitree andnew example file

1ba3cd01c0382b5c873bf2e9fc0bba106d649114 authored about 5 years ago by brj1 <[email protected]>
clip="off" and update docs

fb0a330eb083289bf61f0c3dc14b2218433092df authored about 5 years ago by Guangchuang Yu <[email protected]>
fixed warnings

d14c7a71c2a69a738672498704b73e8392375414 authored about 5 years ago by Guangchuang Yu <[email protected]>
offspring method for ggtree object

2dcbd9e05020e4bd4a28cf910dce51dafee56343 authored about 5 years ago by Guangchuang Yu <[email protected]>
add reference

860448f433c721180e776c41bad3961d03d7129c authored about 5 years ago by Guangchuang Yu <[email protected]>
bug fixed

2d6b44a976d1f764970418725c81ab02bbc62e71 authored about 5 years ago by Guangchuang Yu <[email protected]>
update readme

e562021843bd136a9380e183f89e141104100711 authored about 5 years ago by Guangchuang Yu <[email protected]>
rm .()

fbbd0f085d5075094b003cbdae96e1208f39678c authored about 5 years ago by Guangchuang Yu <[email protected]>
extend `xlim2` and `ylim2` to support discrete scale.

e6e8f4be72a96e4af8f83f2492a5064fe0032c25 authored about 5 years ago by Guangchuang Yu <[email protected]>
xlim2 and ylim2

79e93b9f51a6a0008e210c7c859337e8cfe4befe authored about 5 years ago by Guangchuang Yu <[email protected]>
rm duplicated code

a6ea6d25eac851ca33f11e515d26af90bb8eaba4 authored about 5 years ago by Guangchuang Yu <[email protected]>
roxygen2md

1540db0304af470b1893640c52549c2cf9b90f12 authored about 5 years ago by Guangchuang Yu <[email protected]>
align_x and align_y

06f952f0817201d12a5ea342007c30e054430179 authored about 5 years ago by Guangchuang Yu <[email protected]>
ylim_ggtree

6e77743a9b1b8105accb8d2ceed27220e0d5e8bd authored about 5 years ago by Guangchuang Yu <[email protected]>