github.com/YuLab-SMU/ggtree commits | Ecosyste.ms: OpenCollective

Merge pull request #353 from xiangpin/master

fix geom_nodelab to support circular layout

122956f2097563f42712d1a56dbd6a6359b07cb6 authored about 4 years ago by Guangchuang Yu <[email protected]>

update docs

38d87f8218275b597d53e53f997589e48f57bca2 authored about 4 years ago by Guangchuang Yu <[email protected]>

add match.call to extract geom_nodelab

949ac5cdc6bd8839f2f501736a739f4b121cdc6e authored about 4 years ago by xiangpin <[email protected]>

fix geom_nodelab to support circular layout

4a231782166d4ad8c8faedbf3614eced0ea8280f authored about 4 years ago by xiangpin <[email protected]>

Merge branch 'utemp'

e9bc62dc9af1946d9b561eee573f6d1824373adf authored about 4 years ago by xiangpin <[email protected]>

update url

6c69186a7ff7f2a78f11ebf96fe8368555ef328f authored about 4 years ago by Guangchuang Yu <[email protected]>

update rd of geom_tree

4f18023adb9efdd2a15b2689aa5d3c9d0991d0f7 authored about 4 years ago by xiangpin <[email protected]>

bump version

523d494500018770926725024fb04609ae4b3e22 authored about 4 years ago by Guangchuang Yu <[email protected]>

Merge pull request #349 from xiangpin/master

branch size can be grandually changed

f46edcc37103f9960dce59fdc90820296521fb0e authored about 4 years ago by Guangchuang Yu <[email protected]>

export nsplit parameter

d8047951e9df760cfa0d431ab21515c3f6332b2e authored about 4 years ago by xiangpin <[email protected]>

new release

4e15ce18b3520c01bb34dcc87a008b7c4fc075e1 authored about 4 years ago by Guangchuang Yu <[email protected]>

bump x.y.z version to odd y following creation of RELEASE_3_12 branch

f51310a0bdba395ec556df09de433dd857bdb15b authored about 4 years ago by Nitesh Turaga <[email protected]>

bump x.y.z version to even y prior to creation of RELEASE_3_12 branch

426aef4d84425e0dfb18d11d178706dc352bb279 authored about 4 years ago by Nitesh Turaga <[email protected]>

support continuous aes size

00dd8844717985f0031219c4d5b20fa6d65b9432 authored about 4 years ago by xiangpin <[email protected]>

Merge branch 'utemp'

d50a2353ade87ecf855d1c2fa465ac55dcb7e129 authored about 4 years ago by xiangpin <[email protected]>

import .pt

66439023d4e173e7b238974f12fc912f24ecb6fa authored about 4 years ago by xiangpin <[email protected]>

bump up version

7d5808840040cd243b7fd95a6cf91b1ffc0647fa authored about 4 years ago by Guangchuang Yu <[email protected]>

fixed r check

d4e91d622d4af5bc46b2e4b6f03ca8c972974d66 authored about 4 years ago by Guangchuang Yu <[email protected]>

label_pad

12f3dc394c2389b3c338ff58df0ebb5c786c0921 authored about 4 years ago by Guangchuang Yu <[email protected]>

bump version up

8d8ea39ac811aa61835e34e74140dd4ee3bc1151 authored about 4 years ago by Guangchuang Yu <[email protected]>

Merge pull request #346 from xiangpin/master

support reverse x when layout is roundrect or ellipse

84ae436f49938df5a552123716dc672b2cf4715e authored about 4 years ago by Guangchuang Yu <[email protected]>

support reverse x when layout is roundrect or ellipse

b5d66248730c494a7290478fa83f01a3f31b6aae authored about 4 years ago by xiangpin <[email protected]>

Merge pull request #344 from xiangpin/master

add a new layout -- ellipse

75d362f66a50bf208d40868c8347d587faa98885 authored about 4 years ago by Guangchuang Yu <[email protected]>

adjust ellipse layout

811d1e717d0fd8d527892155d711744365b0c0e9 authored about 4 years ago by xiangpin <[email protected]>

add roundrect layout

4834e57efd5b7d304fcefa8aba448ca35d19a1a2 authored about 4 years ago by xiangpin <[email protected]>

add another new layout roundrect

dfd00863c8443c2168c08f8fd6ca4c1ca08aec6e authored about 4 years ago by xiangpin <[email protected]>

add ellipse layout

68fddb0d1de0d457110738eb26d04b16baaec442 authored about 4 years ago by xiangpin <[email protected]>

update curve to fit the ellipse layout

de4df0d8231ea0c44cd560d818d61a8f4b1048c3 authored about 4 years ago by xiangpin <[email protected]>

Merge pull request #343 from xiangpin/master

add horizontal parameter in geom_cladelabel

6d27b9b48de2e4077bb527a742eb6265acf73e8f authored about 4 years ago by Guangchuang Yu <[email protected]>

Merge branch 'utemp'

2804a42c091578fa6832e7121dd612fc1a7f0f70 authored over 4 years ago by xiangpin <[email protected]>

fortify method for treedataList

6ae936b02657a415116628de950c704410bac45d authored over 4 years ago by Guangchuang Yu <[email protected]>

ggexpand

29b07526213378e3d5cb83afae71cc6fe0d3ba9e authored over 4 years ago by Guangchuang Yu <[email protected]>

add horizontal in geom_cladelabel2

edb31ea680293bc7672fd65ba49e98e7caa5fc24 authored over 4 years ago by xiangpin <[email protected]>

update docs

ad0183c3a688fdbd05ddd151c451d60611790292 authored over 4 years ago by Guangchuang Yu <[email protected]>

Merge pull request #342 from xiangpin/master

geom_cladelab: the devel version of geom_cladelabel to support aes mapping

4643bf161dc4c23488de786f8e1cecf6593a1ec8 authored over 4 years ago by Guangchuang Yu <[email protected]>

support emoji and support confuse arguments, such as fontsize, textsize, fontcolor, textcolor

540414c01854e1c6e28ae1c9e5687740edfa8910 authored over 4 years ago by xiangpin <[email protected]>

modified method to extract dot params avoid Duplicated argument

67c371a2115bf51ee66ffa6a84900970de503add authored over 4 years ago by xiangpin <[email protected]>

remove print to debug

b5f9ac2f7a48e72104ea87e4ec4f3ccfa1137ba9 authored over 4 years ago by xiangpin <[email protected]>

barcolor, textcolor, imagecolor outside aes will replace the them in aes, if them exist simultaneously

fb04d0710905938930cea42d0567f1d6b97722ff authored over 4 years ago by xiangpin <[email protected]>

remove shadowtext

3f5542c6abaecbeec4d0ed0ae9e220654b2e9661 authored over 4 years ago by xiangpin <[email protected]>

update ggplot_add for cladelab

1f78dfdef3671bcb8645c2322859740410d9f4b1 authored over 4 years ago by xiangpin <[email protected]>

add man of geom_cladelab

cfb7fa757cdd8e83a754a483fa980cf59808b59b authored over 4 years ago by xiangpin <[email protected]>

modified seealso

d3c42a70a7fa3981ab492c5dace848e37b3333bc authored over 4 years ago by xiangpin <[email protected]>

mv utilities of ggplot_add to ggplot-add-utilities.R

4ccbc2be25cfe31091a1e83906d505631ac249ca authored over 4 years ago by xiangpin <[email protected]>

new export

76cf32fe6498cf8ab1d45ca052534697863f151a authored over 4 years ago by xiangpin <[email protected]>

add geom_cladelab

b2f7ed6196a3f46ab1ae7ddb83bca4bd93f83701 authored over 4 years ago by xiangpin <[email protected]>

add horizontal argument

1e28f601d536da076a8933b17311859bfa49abe2 authored over 4 years ago by xiangpin <[email protected]>

tanglegram

6f2f83facfdfe7d2c8b5172c0429cb1480bbd537 authored over 4 years ago by Guangchuang Yu <[email protected]>

clean up code

22e375a1a39546d6fe07e801cd984176ee793d99 authored over 4 years ago by Guangchuang Yu <[email protected]>

treedata

ff4cd9906140416fd7989c0086009dec31cce54b authored over 4 years ago by Guangchuang Yu <[email protected]>

td_unnest

38a7d6f42adf46aefe3fe7bee7d0bbbce0b0e133 authored over 4 years ago by Guangchuang Yu <[email protected]>

update docs

232394961afb6ce62c8dd90a5b1ee8e5f557185a authored over 4 years ago by Guangchuang Yu <[email protected]>

Merge pull request #341 from xiangpin/master

update geom_hilight to support geom_hilight(data=tbl_tree, node=selected_node)

456873dbd41bf9f874ed32a8a44eccbb5eb8de35 authored over 4 years ago by Guangchuang Yu <[email protected]>

update news

2190104ffc8b06556aff7b0bc6c2f1ab7cfd1269 authored over 4 years ago by xiangpin <[email protected]>

update geom_hilight to support geom_hilight(data=tbl_tree, node=selected_node)

be5cd571cdfda410e983be6fba4a49a0b3c0ece2 authored over 4 years ago by xiangpin <[email protected]>

update docs

ec1c687bb149b1abc67357654a85e639b0d7f42e authored over 4 years ago by Guangchuang Yu <[email protected]>

todo

944372b769d53e2744b21b2891abaaf8f20311da authored over 4 years ago by Guangchuang Yu <[email protected]>

defunct geom_nodelab2

3c1288d14b442c28ab3722c75ad88c58fd688cba authored over 4 years ago by Guangchuang Yu <[email protected]>

shadowtext

11cd1cce1c4242039282b0c49161f1a638939950 authored over 4 years ago by Guangchuang Yu <[email protected]>

update man

95bd0aff73fb96a685cb5d2b0ca04ceef35c66ae authored over 4 years ago by Guangchuang Yu <[email protected]>

tree_filter

256e2fec9e48e19bc81e4293657b375bed532eea authored over 4 years ago by Guangchuang Yu <[email protected]>

Merge pull request #338 from xiangpin/master

add a xepand parameter in geom_zoom_clade and update %<+% function

77309f4f056c30596a32cab5cfdc3411e454e316 authored over 4 years ago by Guangchuang Yu <[email protected]>

keep original %<+%

fc2180c5a98366a77079e190aa52d469134772de authored over 4 years ago by xiangpin <[email protected]>

Merge branch 'utemp'

1e98e625ee3efa6436712ea47dbd52efaf4a1680 authored over 4 years ago by xiangpin <[email protected]>

update url

3a88291b2d607d12d4f69c86083cb015bd6284a7 authored over 4 years ago by Guangchuang Yu <[email protected]>

Merge remote-tracking branch 'upstream/master'

349230feba90d96e9258fc0d91fc25d1ab3c947d authored over 4 years ago by xiangpin <[email protected]>

update geom_point2 manual

7040282370bf64dbf0b7ea822fbc323eb5e6a2f1 authored over 4 years ago by Guangchuang Yu <[email protected]>

Merge pull request #337 from xiayh17/master

reprocessed geom_rootedge.Rd modified geom_point2

e87d0dc07813aa126e3f34b9769fbcbd0aea5bf0 authored over 4 years ago by Guangchuang Yu <[email protected]>

update %<+%

6f1fd62172c9a0e4d1d3534c840c69deb72a92c5 authored over 4 years ago by xiangpin <[email protected]>

add xexpand parameter to expand x to visualize the annotation of tip when zoom

0602d6eba07d28a32f2f49dfd2f7e56751a14d78 authored over 4 years ago by xiangpin <[email protected]>

delete the error term of " for rectangular layer"

fcb2c3661cf5d0a4ee940f6638967cd5ce2282be authored over 4 years ago by xiayh17 <[email protected]>

add aes param subset, modified online book reference

4ef496f597bbbd81d5e321d7d21b1ad1f8b85ace authored over 4 years ago by xiayh17 <[email protected]>

add details, aesthetics ,reference and example sections; modified seealso section

ec4eba7414c309d26075c1223da12bdcad6236f2 authored over 4 years ago by xiayh17 <[email protected]>

reprocessed geom_rootedge.Rd

3cd89682aae1efa5e4e3c05c3ec26f7fa0d40113 authored over 4 years ago by xiayh17 <[email protected]>

Merge pull request #336 from xiayh17/master

geom_rootedge() #modify example and add dontrun{}

ba571aba232dc76692e8bca12150d307e69b14f9 authored over 4 years ago by Guangchuang Yu <[email protected]>

Update geom_rootedge.R

09d7ed3ba79384a14c132f4c206065845958251c authored over 4 years ago by Guangchuang Yu <[email protected]>

modify example and add dontrun{}

5dd56ba65d94b420ccc77961b83e906eaa81de58 authored over 4 years ago by xiayh17 <[email protected]>

update geom_rootedge manual

8a75d1a39243bedf3a891e4a91b1d24de1de29e7 authored over 4 years ago by Guangchuang Yu <[email protected]>

Merge pull request #334 from xiayh17/master

add aesthetics section, exmple and references of geom_rootedge()

47df85ef477268a07af03be36d61147b9c4753d3 authored over 4 years ago by Guangchuang Yu <[email protected]>

removed duplicate rootedge term from details

d30ebea9b1c8834ac56a724b6acb7a6a77c743e6 authored over 4 years ago by xiayh17 <[email protected]>

removed Aesthetics section and add parameters for reference in details

fb3ae233f55a895d2cd2b73a0b3186efd9768f9b authored over 4 years ago by xiayh17 <[email protected]>

add aesthetics section, exmple and references of geom_rootedge()

7601723f52fa69239cbdd6a965ab46626906f36a authored over 4 years ago by xiayh17 <[email protected]>

update citation

2f69e3574a83d926b35c5fe51122e72332cd2e84 authored over 4 years ago by Guangchuang Yu <[email protected]>

zoomClade and geom_zoom_clade

764fb630dc23fb7c2ffd56ea16630bbfb9c8fcbc authored over 4 years ago by Guangchuang Yu <[email protected]>

fixed R check

e0663b6e9a3ca4e1d98f16a5e4cc48b3f8af335f authored over 4 years ago by Guangchuang Yu <[email protected]>

update

980c7400985249cef9758559e68dc2045a4b7e73 authored over 4 years ago by Guangchuang Yu <[email protected]>

remove functions

b62eb8c88038013d6ebaa3a4cd91b42e3b365730 authored over 4 years ago by Guangchuang Yu <[email protected]>

as_ylab in geom_tiplab()

59c29a00ed6b4550c9963b2c947223b20174df51 authored over 4 years ago by Guangchuang Yu <[email protected]>

as_ylab in geom_tiplab()

cbd571239be2cae7a868d96d0b4f318623197287 authored over 4 years ago by Guangchuang Yu <[email protected]>

bug fixed

aef14028119d83f25625b5512c22da41e1e86235 authored over 4 years ago by Guangchuang Yu <[email protected]>

hexpand

3ac084ba66cd23d54bb2cc148480b39b3d212745 authored over 4 years ago by Guangchuang Yu <[email protected]>

Merge pull request #327 from xiangpin/master

comments out geom_hilight and renames geom_hilight2 to geom_hilight and support inheriting data...

15cda8b82d3658247bc437dcae5ace3aebf9c619 authored over 4 years ago by Guangchuang Yu <[email protected]>

bump version up and commit to bioconductor

2f420520f7973dca22b429d533967d39c1c73efd authored over 4 years ago by Guangchuang Yu <[email protected]>

update export

01337f66d322263030a4ed7c6c0d4c396942e347 authored over 4 years ago by xiangpin <[email protected]>

update doc

6aab0e0ae3c8450a41d7de057821f822c3648784 authored over 4 years ago by xiangpin <[email protected]>

update rd of geom_taxalink

cabe02d24597395ac3609e909ef345b77150210d authored over 4 years ago by xiangpin <[email protected]>

extract some block from hilight method

96b4d291414bacbd28b87ab2fd0bbfc76385a1fa authored over 4 years ago by xiangpin <[email protected]>

support subset and add type parameter

167d4ce2ff3c315ebb5128211e4bb70263aff5f6 authored over 4 years ago by xiangpin <[email protected]>

change geom_hilight2 to geom_hilight

1c9c65114528091336f4f6d597d333cd0439737c authored over 4 years ago by xiangpin <[email protected]>

comment original geom_hilight

6ea0bbc817cfb911a464ddf54fb492025b8e66cd authored over 4 years ago by xiangpin <[email protected]>