Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/YuLab-SMU/ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees
https://github.com/YuLab-SMU/ggtree

o parse translation matrix in beast nexus <2014-12-24, Wed>

5ee87397a7306ddf085531b1fa6fbc536a9f214b authored almost 10 years ago by Guangchuang Yu <[email protected]>
extract beast info

ac7493308dcf5c801a88e10cadf80d6adde3801a authored almost 10 years ago by Guangchuang Yu <[email protected]>
gplot

852afbd97bfe1fa9d3ee89407d156cfce49f2854 authored about 10 years ago by Guangchuang Yu <[email protected]>
change pkg title

35eab1565b9fb94ea2bca1107f692a337fa6c120 authored about 10 years ago by Guangchuang Yu <[email protected]>
remove factor attr of df

2dcce191076d13c9a3b60697d4add6c5a685545d authored about 10 years ago by Guangchuang Yu <[email protected]>
modified vignette to show based on branch position and break the evolution distance scale <2014-12-22, Mon>

2e77c2ae2a8ae264c50a182de949c6bdba179d9a authored about 10 years ago by Guangchuang Yu <[email protected]>
label can be put on branch

2031cfe3ebd0780ec1a72de08e4dd50575457773 authored about 10 years ago by Guangchuang Yu <[email protected]>
fully support of jplace for annotation

ea09a2c01f6e7cdf07568680d4eae08187efaaae authored about 10 years ago by Guangchuang Yu <[email protected]>
update vignette

67bc3c201cae2d58f14910ff8f0381f12cd32e29 authored about 10 years ago by Guangchuang Yu <[email protected]>
unrooted

df636649733aeefa1e0760a139034819ccbf1140 authored about 10 years ago by Guangchuang Yu <[email protected]>
layout

270d4eba3455f4b1dc380071f1173ab7f790d4d1 authored about 10 years ago by Guangchuang Yu <[email protected]>
import extract.clade

9d012312a63b22da0cbd1c6ee76d087a6a1835f9 authored about 10 years ago by Guangchuang Yu <[email protected]>
equal-angle algorithm

4d60d6c3a5f7aae98c4cdd3bc67c47fa06fd7590 authored about 10 years ago by Guangchuang Yu <[email protected]>
layout

892bf8e32ae4acbcc49a5d5546057e0be2c224e3 authored about 10 years ago by Guangchuang Yu <[email protected]>
utilities

1dfec21d304feb919d6fc0c4524327d708fc6539 authored about 10 years ago by Guangchuang Yu <[email protected]>
%<+% function and update vignettes

44182d0527801e91fc34e3ed5e360aa98ada96b9 authored about 10 years ago by Guangchuang Yu <[email protected]>
%<%

8a657cff1f19f6d3a6019b2bb04aa9309e42826f authored about 10 years ago by Guangchuang Yu <[email protected]>
%<% function

fbbab716f638748a73cf3dc21d4628262c551cff authored about 10 years ago by Guangchuang Yu <[email protected]>
update vignettes

aa6d265e21d87e9eca5de5f7dd81bed7ba2ab658 authored about 10 years ago by Guangchuang Yu <[email protected]>
add test of converting polytomy to binary tree

46caf0ef891cb26ec0b09e820bed10eaa15d557e authored about 10 years ago by Guangchuang Yu <[email protected]>
update readme

d63743beaf320f38c718d406684272150a606047 authored about 10 years ago by Guangchuang Yu <[email protected]>
update readme

3d494d1a1f181619cc0176f992854d3aa640420f authored about 10 years ago by Guangchuang Yu <[email protected]>
update sample.nwk

d6f44473eb96ddd0c926dd03c74b4b604eb08e3c authored about 10 years ago by Guangchuang Yu <[email protected]>
add example in man files

7553c7ac46fa5b70ece271336d6e1cab10f9ff08 authored about 10 years ago by Guangchuang Yu <[email protected]>
update description

6aab13a7e75b740dc8d5f4d8e7bc6a58e18fca8b authored about 10 years ago by Guangchuang Yu <[email protected]>
update vignette

2c867ac13e5434b9dddfa50aeafb109a83fc1627 authored about 10 years ago by Guangchuang Yu <[email protected]>
bump version to 0.99

874154f55a5c012e618d9991fd71271773701d01 authored about 10 years ago by Guangchuang Yu <[email protected]>
update readme

48c8bd9d96b70cff6043d5b1f259eba775b39203 authored about 10 years ago by Guangchuang Yu <[email protected]>
update readme

1f9416ee2bf5e560afb71cfc82b82998b4e31f87 authored about 10 years ago by Guangchuang Yu <[email protected]>
update readme

bac30b77381723c794a4793c27d1687179bbbc87 authored about 10 years ago by Guangchuang Yu <[email protected]>
update readme

12e5804d633d4a45db55462d2e519f0ded724014 authored about 10 years ago by Guangchuang Yu <[email protected]>
update vignette

d4cfa63d3454f54ca1d515450a6c348315391061 authored about 10 years ago by Guangchuang Yu <[email protected]>
Delete .gitignore

38782aaa429d7b880ebbe094b3844e4b520509e4 authored about 10 years ago by Guangchuang Yu <[email protected]>
use BiocStyle

fde58a62d1fa16eb554997adc4be94fb31e532da authored about 10 years ago by Guangchuang Yu <[email protected]>
update geom_tiplab

fd7d136265443e7363106d481cb42fdcd919deff authored about 10 years ago by Guangchuang Yu <[email protected]>
update geom_tiplab

0f6f0a2c673da33141320780516dbe12253b4781 authored about 10 years ago by Guangchuang Yu <[email protected]>
update news

cac6b953102cda91d718f65a542b32cb239916ce authored about 10 years ago by Guangchuang Yu <[email protected]>
geom_place

b6e6874fe0b03ca68f93413b4ea4db896498358b authored about 10 years ago by Guangchuang Yu <[email protected]>
typo

10354a9764a9a7219cd980c189650085a099ef57 authored about 10 years ago by Guangchuang Yu <[email protected]>
theme_tree2()

b1115a1843c5da84bd970c42c2a4233b789575a7 authored about 10 years ago by Guangchuang Yu <[email protected]>
output file of rm.singleton.nwk

d35fdd4998cdc7c7ddf0ee704ff2ce8ea4342bfd authored about 10 years ago by Guangchuang Yu <[email protected]>
update rm.singleton.nwk

e8f9e2909730a7705167b01df214de688dd0c5ea authored about 10 years ago by Guangchuang Yu <[email protected]>
update rm.singleton.newick

040fe98f3770f72fac6c96d365152d9f9b13d12f authored about 10 years ago by Guangchuang Yu <[email protected]>
rm.singleton.newick

6d8f7bb89e32c7c7bb373f91be468487bbcb8c00 authored about 10 years ago by Guangchuang Yu <[email protected]>
rm.singleton.newick

536d8eb3652f2c88f20408ca86b7f2390758f7dc authored about 10 years ago by Guangchuang Yu <[email protected]>
rm blank line

4da4a9a28a642c6467c5f0363c6f23bf07701ac8 authored about 10 years ago by Guangchuang Yu <[email protected]>
mv some code

116393ee089995bc26ecf707d79e903dae0715ef authored about 10 years ago by Guangchuang Yu <[email protected]>
as.binary

a6f23ba7fff310d7397e0dcb11a5b262f778259b authored about 10 years ago by Guangchuang Yu <[email protected]>
add package doc

08212750d945893f1d09f099d1ef4fbf63b9005e authored about 10 years ago by Guangchuang Yu <[email protected]>
treeinfo of jplace

ad389e08a8f4f5d15486311cfe998df4ed3a6eff authored about 10 years ago by Guangchuang Yu <[email protected]>
update get parent node in determine position

9f00831201fb1ddb4446da4b20e48a4710439614 authored about 10 years ago by Guangchuang Yu <[email protected]>
jplace

9e0fb25a88eac960beb64f3f27d80b646a29b160 authored about 10 years ago by Guangchuang Yu <[email protected]>
NJ method

6cdd47e70f103d3088b5fb60ed70fe245347cc2b authored about 10 years ago by Guangchuang Yu <[email protected]>
tree operation

274387f50f61f24eed432dcc3cfe04a3459474f4 authored about 10 years ago by Guangchuang Yu <[email protected]>
get.placements

e82aea222520e6e3a104177dd36452ca6ff80628 authored about 10 years ago by Guangchuang Yu <[email protected]>
satisfy codetool

17b99e9a82c42550de8740cc44878ba2359d2a4c authored about 10 years ago by Guangchuang Yu <[email protected]>
geom_eplace

c842faefe060404edb6c082cf3f4e26786f673de authored about 10 years ago by Guangchuang Yu <[email protected]>
extract root edge

3fc860f57d9560e7aa165a1b7ddb51cc309106f7 authored about 10 years ago by Guangchuang Yu <[email protected]>
bug fixed in getYcoord

23a6352b0edb5704686c978fea657aab8e119a2c authored about 10 years ago by Guangchuang Yu <[email protected]>
fixed getYcoord

4a79027eed0639be7283ab9df6558f9f90449d24 authored about 10 years ago by Guangchuang Yu <[email protected]>
export fortify jplace

0a1010caff9ab85b518609e6d95ea0d73d667e69 authored about 10 years ago by Guangchuang Yu <[email protected]>
jplace

75582e5234ab6571674cbbb1c63337bbd1272ef3 authored about 10 years ago by Guangchuang Yu <[email protected]>
dist.legend parameter

68acc578d21921ef20ab95bb500d239f70fa01c4 authored about 10 years ago by Guangchuang Yu <[email protected]>
distant legend

531ea2e436bc13ee5ee7df8187f364426007ada5 authored about 10 years ago by Guangchuang Yu <[email protected]>
satisfy codetools

fa752db313b17679e2d59ad59e111502eb26193a authored about 10 years ago by Guangchuang Yu <[email protected]>
add distance legend

c855555083c9a7e299fa4ce7be6c32a0ebbc17cb authored about 10 years ago by Guangchuang Yu <[email protected]>
support ladderize tree

333dc40cac571de84ff08035967ba697432bacc9 authored about 10 years ago by Guangchuang Yu <[email protected]>
mv theme_blank to theme_tree

b53f8220697ef8bc9a18b4749b05682b3bdee0e6 authored about 10 years ago by Guangchuang Yu <[email protected]>
mv theme_blank to theme_tree

13e52df8a2bfc4639b45175db7d16177f6000cb5 authored about 10 years ago by Guangchuang Yu <[email protected]>
implement geom_tree, geom_tiplab, geom_tippoint, geom_aline and theme_blank <2014-12-04, Thu>

a5e206eae434e40ff57af282b424df650b5964fb authored about 10 years ago by Guangchuang Yu <[email protected]>
add getRoot, isRoot and getParent functions

902b9eaa7ed641020ddedb8aef8b18acd507a25c authored about 10 years ago by Guangchuang Yu <[email protected]>