Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/YuLab-SMU/ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees
https://github.com/YuLab-SMU/ggtree

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66b70a86f6c1d7ab3750e811e914fa3f67ea10e8 authored almost 10 years ago by g.yu <g.yu@bc3139a8-67e5-0310-9ffc-ced21a209358>
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718ecb46cdb164a65200e1ac74d5618f32147998 authored almost 10 years ago by Guangchuang Yu <[email protected]>
travis build

9dacea31b5f611d3af6c0f5e32ef7f958d36bcc9 authored almost 10 years ago by GuangchuangYu <[email protected]>
Commit made by the Bioconductor Git-SVN bridge.

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b1662c45a808a5c7b48c69e83fa2796896d179e6 authored almost 10 years ago by Guangchuang Yu <[email protected]>
Commit made by the Bioconductor Git-SVN bridge.

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c5c68639e6b2e72ae1e4f97e4babba47c0e3be41 authored almost 10 years ago by g.yu <g.yu@bc3139a8-67e5-0310-9ffc-ced21a209358>
travis build

0b49c5c390f8817e08bac8fd10573b8dd2e1b10b authored almost 10 years ago by GuangchuangYu <[email protected]>
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66a59d5b3c13fcaf0826a14b8ea1fd625bb8f6a8 authored almost 10 years ago by Guangchuang Yu <[email protected]>
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f03c7c8d17b664bc217e5fb8c536bad9cded32a9 authored almost 10 years ago by g.yu <g.yu@bc3139a8-67e5-0310-9ffc-ced21a209358>
Update .travis.yml

8094c9d6de1d5285613570eac658160eb1f3a02d authored almost 10 years ago by Guangchuang Yu <[email protected]>
Commit made by the Bioconductor Git-SVN bridge.

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d1bdc8d5d60a14bb660aae2143b63f5e652d7120 authored almost 10 years ago by g.yu <g.yu@bc3139a8-67e5-0310-9ffc-ced21a209358>
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451d3de119c079a0b1362d9f7704d02cc2bbca41 authored almost 10 years ago by Guangchuang Yu <[email protected]>
travis

3f8a3d64de3303ec40558de2ea45e63a3f27f5a1 authored almost 10 years ago by GuangchuangYu <[email protected]>
Commit made by the Bioconductor Git-SVN bridge.

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a2d44f6572de4a746e9a87301522514c1d8b2c68 authored almost 10 years ago by g.yu <g.yu@bc3139a8-67e5-0310-9ffc-ced21a209358>
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443248f2b8c472ca06bcb1650a6009b5e048a685 authored almost 10 years ago by Guangchuang Yu <[email protected]>
bug fixed in beast

ff629c4cb37989f7671bd28af2aa6be4308c3b1d authored almost 10 years ago by GuangchuangYu <[email protected]>
Commit made by the Bioconductor Git-SVN bridge.

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be76b050897d12e9bbc4224703a19c8e02d0190e authored almost 10 years ago by Guangchuang Yu <[email protected]>
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7da77e6c5e0637af8e589f1e5ea0c3ef52313a19 authored almost 10 years ago by g.yu <g.yu@bc3139a8-67e5-0310-9ffc-ced21a209358>
update vignette

3a9059183d9a33cff143c90c6a09d6d566c94955 authored almost 10 years ago by GuangchuangYu <[email protected]>
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c5822d81e67568125f25f087885039f2341646c7 authored almost 10 years ago by g.yu <g.yu@bc3139a8-67e5-0310-9ffc-ced21a209358>
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640929923bab15f8c98489ed2b0b8a5aa84502d6 authored almost 10 years ago by Guangchuang Yu <[email protected]>
phylopic

4e97e602c3e032f680bc3da4b47209dd77c97f36 authored almost 10 years ago by GuangchuangYu <[email protected]>
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648f47f176353db75f202471a70856a827596bbc authored almost 10 years ago by g.yu <g.yu@bc3139a8-67e5-0310-9ffc-ced21a209358>
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7529cf317596a02491ffb757fe66cb3bf6345735 authored almost 10 years ago by Guangchuang Yu <[email protected]>
angle for unrooted layout

e73db7b44a8c7b26082d00a054884c208733d90d authored almost 10 years ago by Guangchuang Yu <[email protected]>
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92064796f94d8ae99571281b2b2d6d38b9e72eef authored almost 10 years ago by g.yu <g.yu@bc3139a8-67e5-0310-9ffc-ced21a209358>
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2b076745dce0cabc8be77b541c15de9434559caf authored almost 10 years ago by Guangchuang Yu <[email protected]>
calculate angle for fan layout

9f0522838bdfdb3f0dba8bdd4a513744f8e09da3 authored almost 10 years ago by GuangchuangYu <[email protected]>
Commit made by the Bioconductor Git-SVN bridge.

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37ef7792d6e5e2d9c1a08758fbb9933dabbf0950 authored almost 10 years ago by g.yu <g.yu@bc3139a8-67e5-0310-9ffc-ced21a209358>
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9d37ab0d88c5d30269b377741c3c259e71407815 authored almost 10 years ago by Guangchuang Yu <[email protected]>
remove scaling cladogram branch

478d0ac7fd08f1b7b0ed3f1e55a48e4f2f14a67a authored almost 10 years ago by GuangchuangYu <[email protected]>
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ec55f2c26e1b4314ff74c3f219f7930df3ab8dc7 authored almost 10 years ago by g.yu <g.yu@bc3139a8-67e5-0310-9ffc-ced21a209358>
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88619cd4d85562e44e7a79e5a31200406386f0e1 authored almost 10 years ago by Guangchuang Yu <[email protected]>
experimental feature

7c135650531b4a74b2e532fcf4cb6d231ffc0b26 authored almost 10 years ago by GuangchuangYu <[email protected]>
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89476ba1a09e1414f81454b0786dda21adc163f1 authored almost 10 years ago by g.yu <g.yu@bc3139a8-67e5-0310-9ffc-ced21a209358>
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eef99a5e5ce17edba9cc73f3583734a2d595dadf authored almost 10 years ago by Guangchuang Yu <[email protected]>
experimental feature

bf28eb551f8c7f6d429e6c6a10c794bf65403be0 authored almost 10 years ago by GuangchuangYu <[email protected]>
Commit made by the Bioconductor Git-SVN bridge.

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7b5a257703f7f6900ae75243c1a7efdda7497d63 authored almost 10 years ago by g.yu <g.yu@bc3139a8-67e5-0310-9ffc-ced21a209358>
Commit made by the Bioconductor Git-SVN bridge.

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6103ff6d269ed0d367ec2388b070031a7ecfba0d authored almost 10 years ago by Guangchuang Yu <[email protected]>
add BiocViews

e07733e9adca7f59f567e132629b42a351188635 authored almost 10 years ago by GuangchuangYu <[email protected]>
Commit made by the Bioconductor Git-SVN bridge.

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308231f7e32cc69b4418a66e6c4613a729b94d68 authored almost 10 years ago by g.yu <g.yu@bc3139a8-67e5-0310-9ffc-ced21a209358>
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a4ffa2e318df015aad27e4b414d000a3a9bb0e23 authored almost 10 years ago by Guangchuang Yu <[email protected]>
read.beast now supports support values of sets such as {x, y, z} <2015-01-19, Mon>

e468139bc733aa519c485a3c72ba41dcb9ea6fc3 authored almost 10 years ago by GuangchuangYu <[email protected]>
Commit made by the Bioconductor Git-SVN bridge.

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5c5cf18ef6dedd80271a56124e30ebb9798c3a91 authored almost 10 years ago by Guangchuang Yu <[email protected]>
Commit made by the Bioconductor Git-SVN bridge.

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7315374241586a55b2502d9b2670dcaf94321e87 authored almost 10 years ago by g.yu <g.yu@bc3139a8-67e5-0310-9ffc-ced21a209358>
character support values in beast file

88e440381a6c965187f3eb9a94e856f1257f2520 authored almost 10 years ago by Guangchuang Yu <[email protected]>
Commit made by the Bioconductor Git-SVN bridge.

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628aa0bfd9ee0e0078a151189681b06ccb71e003 authored almost 10 years ago by Guangchuang Yu <[email protected]>
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ebc03091c0c7cca0d288da315c46f9d7998fbb30 authored almost 10 years ago by g.yu <g.yu@bc3139a8-67e5-0310-9ffc-ced21a209358>
test git-svn-bridge

6afd456a1ce24f0c07d5181f156717e3a0d711a6 authored almost 10 years ago by GuangchuangYu <[email protected]>
upgrade to 0.99.6

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b2b46fb551b6bee1e9fd4affd3f1d4c897e0153f authored almost 10 years ago by g.yu <g.yu@bc3139a8-67e5-0310-9ffc-ced21a209358>
upgrade to 0.99.6

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@98386 bc...

b921de9646356755c8be3b5c97c0af725b3bcf66 authored almost 10 years ago by Guangchuang Yu <[email protected]>
Adds ggtree/ seq2pathway/ sidap/ to the repos.

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@98340 bc3139a8-...

d32146c6ce5ac178ef8e255574b6b678d79a1262 authored almost 10 years ago by m.carlson <m.carlson@bc3139a8-67e5-0310-9ffc-ced21a209358>
Adds ggtree/ seq2pathway/ sidap/ to the repos.

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@98340 ...

0c8aaf3318b64e95cf903e3ecc66c80232b84bcb authored almost 10 years ago by Marc Carlson <[email protected]>
groupOTU methods

5a8ec7436f44626e70c7ba80e74da69552c6028e authored almost 10 years ago by Guangchuang Yu <[email protected]>
update vignette

6b8ac27150ef1f338899eb1e7b4ea6d479c6a08e authored almost 10 years ago by Guangchuang Yu <[email protected]>
groupOTU and update vignette

635b49c46d377a6a43eadcf5ef070e314957b42c authored almost 10 years ago by Guangchuang Yu <[email protected]>
move ape and ggplot2 from Depends to Imports

7d618487bb629599b558cea00a7bdd9aba27be8d authored almost 10 years ago by Guangchuang Yu <[email protected]>
branch.length

68bba038ceb808d3bd3c4cdb61a5e586ac7abb01 authored about 10 years ago by Guangchuang Yu <[email protected]>
get.tipseq

004f0f0560a12bb03b9695c3ddc654a95139bf42 authored about 10 years ago by Guangchuang Yu <[email protected]>
add citation

917daeb4b847df7a229d14e0f9461455285e823a authored about 10 years ago by Guangchuang Yu <[email protected]>
update gzoom

09c79a98542ed17bc393ca5e680cb0dd4fb70fb8 authored about 10 years ago by Guangchuang Yu <[email protected]>
typo

424800774fe4728c6c80ad0988161ce21b1daf26 authored about 10 years ago by Guangchuang Yu <[email protected]>
gzoom

6978c1aaff646fa2626a0c27835f1fb13d81bbb5 authored about 10 years ago by Guangchuang Yu <[email protected]>
remove pdf vignette

5748055422ce7eb4fe71e4d8e86ff90c0504669b authored about 10 years ago by Guangchuang Yu <[email protected]>
convert x% to 0.x

8130244f0dce3ac35e5611eed881a6ab19a3b674 authored about 10 years ago by Guangchuang Yu <[email protected]>
add examples in man pages

f493b6c45e63b550dde8424a59fefca883cc4402 authored about 10 years ago by Guangchuang Yu <[email protected]>
add examples

f4818724b869520f0e045d0e4a33cb8866437b01 authored about 10 years ago by Guangchuang Yu <[email protected]>
remove <<-

cc26761d26b8cafddda7246214e541d84974df34 authored about 10 years ago by Guangchuang Yu <[email protected]>
update vignette

56e1ebc1c02dc67a34e2beaf02b05843f9414412 authored about 10 years ago by Guangchuang Yu <[email protected]>
update vignette

d79158937a2298572ed48319ef8ecd5e2acb0845 authored about 10 years ago by Guangchuang Yu <[email protected]>
update vignette and use BibTex and CSL for references

f42391e8f2724f1f7fd652e71c9936491340dc26 authored about 10 years ago by Guangchuang Yu <[email protected]>
node_mapper prototype

69ec35f8dcbc744e7c300a508511de302c63fe8f authored about 10 years ago by Guangchuang Yu <[email protected]>
cladogram

c8025c3ff863a37376f8c4a4ac57f63090e4c8be authored about 10 years ago by Guangchuang Yu <[email protected]>
read.baseml function and update vignette with baseml example <2015-01-04, Sun>

fea6c9fba76b5c0f266c86d22971e12fdc7cf543 authored about 10 years ago by Guangchuang Yu <[email protected]>
hyphy plot

2de2df98b1c317651dbb86874ba71138af4824e2 authored about 10 years ago by Guangchuang Yu <[email protected]>
merge vignettes

c1694edcfecb465f4716ae49129c005a2007dadf authored about 10 years ago by Guangchuang Yu <[email protected]>
ggtree now support branch.length = "none" to only draw tree topology <2015-01-03, Sat>

8da289f7dad2b6d9ae0e462fd55562ca426f739d authored about 10 years ago by Guangchuang Yu <[email protected]>
update README and vignettes

d73853d79786ff4ac67a38bada8343424781099b authored about 10 years ago by Guangchuang Yu <[email protected]>
get.subs

f2ea2a94439e5f88c8a3addba4c1990492085787 authored about 10 years ago by Guangchuang Yu <[email protected]>
show and get.tree of hyphy

5b54fd22671f50ffad2b48a88305df7f66342496 authored about 10 years ago by Guangchuang Yu <[email protected]>
read.hyphy

9bce88c56e3862abaa6702afef17b52eae7f661d authored about 10 years ago by Guangchuang Yu <[email protected]>
export hyphy class

7f89c464f358901ec376beedbdb1ad3d66374e64 authored about 10 years ago by Guangchuang Yu <[email protected]>
o plot method for beast class and get.tree method for codeml class <2014-12-31, Wed>

f3290111e8123258a990f9cbdadcbe5c6a8f5516 authored about 10 years ago by Guangchuang Yu <[email protected]>
read.stats_beast

cb08f14d61c9ad2a712d75012c0a565bba3c6bd7 authored about 10 years ago by Guangchuang Yu <[email protected]>
get.subs of codeml

f4f1a74c8364e5cffa5b1bea20d57e2abc9a2781 authored about 10 years ago by Guangchuang Yu <[email protected]>
methods of codeml

ecbfd64a85d9fc389b6eb9bc9a533cfc5a5d5df1 authored about 10 years ago by Guangchuang Yu <[email protected]>
plot method for paml_rst

5e82b16f5fe04496bfe493f45523a5063ae9ccfb authored about 10 years ago by Guangchuang Yu <[email protected]>
get.subs and set.subs

adff19da87e60d795aa40b176ffaea1155d9c3ec authored about 10 years ago by Guangchuang Yu <[email protected]>
subs

28e4eede947c14c23e5d4398d3894139c0147c92 authored about 10 years ago by Guangchuang Yu <[email protected]>
codeml_mlc methods

b8955e8222fddc5f99acbc3d9831dd2f17509687 authored about 10 years ago by Guangchuang Yu <[email protected]>
typo

9ed9362a3fe155ec6c636308848735dee1b6ec65 authored about 10 years ago by Guangchuang Yu <[email protected]>
codeml

2c56280b402b0c17e3f2ebc8e67398011aaaa673 authored about 10 years ago by Guangchuang Yu <[email protected]>
paml

365dfc3fd27be743d60408b89a319bccaae77ad6 authored about 10 years ago by Guangchuang Yu <[email protected]>
paml

8dd0cff355d51f5b6ead683e181847cdcf17a7de authored about 10 years ago by Guangchuang Yu <[email protected]>
add example data

c2b3b04bfea22c66b410dcf4987df9ba05ff26cb authored about 10 years ago by Guangchuang Yu <[email protected]>
hyphy

a86c28e7b3789df97769404d5e8f29fc2bff1717 authored about 10 years ago by Guangchuang Yu <[email protected]>
mv get.tree to get.treetext of jplace

13f26e6640b9c165123fccb0c45aff8b938c7c7e authored about 10 years ago by Guangchuang Yu <[email protected]>
man file and beast output example file

d0869e3730c286b1dd7379f9a3cf6fbbd409b992 authored about 10 years ago by Guangchuang Yu <[email protected]>
more methods for beast

05ef1d496931a12cec812e557846f3aee3fb5e72 authored about 10 years ago by Guangchuang Yu <[email protected]>
beast class and read.beast function

36350194c9721869970683d3457cc23cc8ca9017 authored about 10 years ago by Guangchuang Yu <[email protected]>
prototype of coplot

d969d93a93ce154857014abb5d9ff422d3686500 authored about 10 years ago by Guangchuang Yu <[email protected]>