github.com/YuLab-SMU/ggtree commits | Ecosyste.ms: OpenCollective

as.phylo.hclust2

aa1d7126a5ad0ef8a69810b49bae51f10c7cd62d authored over 2 years ago by Guangchuang Yu <[email protected]>

update

d91c9b22b8e4f26e93382dde8dd8433d14257556 authored over 2 years ago by Guangchuang Yu <[email protected]>

Merge pull request #506 from LPDagallier/branch-1

Add outline to nodepies

2270b5d39b6bf5d27f6f298b3acd2f15b47b2db2 authored over 2 years ago by Guangchuang Yu <[email protected]>

Add outline to nodepies (outline.color and outline.size), remove margins in theme_inset (better display of the inset on the plot)

5ebd35a407d98f9fb393bee582722e8ad1380b88 authored over 2 years ago by Léo-Paul Dagallier <[email protected]>

speed up

a4ef063df77d3b80756473c09d864029494550e6 authored over 2 years ago by Guangchuang Yu <[email protected]>

update_edge_hclust

68b65a4f96344ffe40d4bff482a85c995e4a0cb5 authored over 2 years ago by Guangchuang Yu <[email protected]>

Merge pull request #498 from xiangpin/slanted.v2

remove redundant loop in slanted.v2

84d26a5835da42a6d21fb1946ecb37fb0388f276 authored over 2 years ago by Guangchuang Yu <[email protected]>

remove redundant loop

e4a1369749dbcb7c92b20cd0796b328c709679a4 authored over 2 years ago by xiangpin <[email protected]>

update docs, #496, #497

6343f7a13f684b4a8d7fff7fbe901ce765bb572f authored over 2 years ago by Guangchuang Yu <[email protected]>

Merge pull request #497 from xiangpin/slanted.v2

slanted layout when branch.length is none

5bf930f0312ab2e09dc5e9e51c553443a09ad5bd authored over 2 years ago by Guangchuang Yu <[email protected]>

slanted layout when branch.length is none

06db48303a46071500456aa097c006acfa4104a9 authored over 2 years ago by xiangpin <[email protected]>

bioc3.15

5734dc1f2d89aa1760e6bbdc927fff450615921a authored over 2 years ago by Guangchuang Yu <[email protected]>

bioc3.15

2bcc3e3e70e071d55a4562c229a2fff4fad5de47 authored over 2 years ago by Guangchuang Yu <[email protected]>

update bioc version

b94fead0e9b92dd073e4ae29b1de891c7f62e105 authored over 2 years ago by Guangchuang Yu <[email protected]>

bump x.y.z version to even y prior to creation of RELEASE_3_15 branch

23f08a3da1829d1bbb6827ed1c4cf878daa4b539 authored over 2 years ago by Nitesh Turaga <[email protected]>

bump x.y.z version to odd y following creation of RELEASE_3_15 branch

d87fe63808f6f38d697a5ddc560ee89f2e427fe7 authored over 2 years ago by Nitesh Turaga <[email protected]>

bump version

8f945e977ba4a962a085592aee0466db06167549 authored over 2 years ago by Guangchuang Yu <[email protected]>

Merge pull request #493 from xiangpin/geom_striplab

add geom_striplab

cca5e8d55fb2096b26cfc3fb25d94347d40ae4f2 authored over 2 years ago by Guangchuang Yu <[email protected]>

update geom_striplab

2d64d4bb6260388f295c4e8d2a01e2cd157fa247 authored over 2 years ago by xiangpin <[email protected]>

introduce to.bottom in geom_hilight

d1cb2d91b0a2fe7d1ab85892988b8b766253ca1d authored over 2 years ago by xiangpin <[email protected]>

bump version

4b0da3514f2a38f621c0d634995f2d192a1715aa authored over 2 years ago by Guangchuang Yu <[email protected]>

mv identify to ggfun

7e05bcf06de177082df245acbeb29892924dc975 authored almost 3 years ago by Guangchuang Yu <[email protected]>

update identify() method

c94a8385722e4f6f36918034430a76511682c758 authored almost 3 years ago by Guangchuang Yu <[email protected]>

update man files and fixed R check

fbeaa25d96403147ee2bc70535ea0617a368fecc authored almost 3 years ago by Guangchuang Yu <[email protected]>

Merge pull request #489 from SanL20/dev-san

Document update

4a86238b3000d266147bda244e5ea30193d4ad15 authored almost 3 years ago by Guangchuang Yu <[email protected]>

Document update

Document update

3c7f66c8ce9070367702fc0bc6542e87bc46ec2e authored almost 3 years ago by William Lee <[email protected]>

Merge branch 'YuLab-SMU:master' into dev-san

3d617910a3d2a71553298fa5eb81e01e3e066eae authored almost 3 years ago by William Lee <[email protected]>

Merge pull request #485 from xiangpin/master

update citation

453d8d02a537e07747a3a26048e24fa6da66646c authored almost 3 years ago by Guangchuang Yu <[email protected]>

mv pillar

3ee701f262cca420eabd8ce06dee0e22c516125d authored almost 3 years ago by xiangpin <[email protected]>

new tidytree version

69143d0bb7e24cda8f939a4ca5ec0c4b0ff43456 authored almost 3 years ago by xiangpin <[email protected]>

update the print of refs

a653972a27363440d122a02812f8f5ac3525c26a authored almost 3 years ago by xiangpin <[email protected]>

Merge remote-tracking branch 'upstream/master'

8b95b3e67b6bdf33e9baf96cfeca11e11dca647e authored almost 3 years ago by xiangpin <[email protected]>

update citation

f1d8298d65c41761b409c0f0ce03d61192ca9429 authored almost 3 years ago by xiangpin <[email protected]>

Merge pull request #472 from kopperud/master

remove ggimage dependency for theme

60be2d1207800e4451371ace4607884d3dccf4aa authored almost 3 years ago by Guangchuang Yu <[email protected]>

import theme_transparent from ggfun

a695ddf779725b700d4749c751c0b54e6786663b authored almost 3 years ago by Bjørn Tore Kopperud <[email protected]>

remove ggimage dependency for theme

1a0d8747c5e8a8f8fe4cc6f4e0ff49d3020067a4 authored almost 3 years ago by Bjørn Tore Kopperud <[email protected]>

Update layout.R

befd14c60e84c42bedd25923396350f263ec2964 authored about 3 years ago by William Lee <[email protected]>

bump version

b448e588cc11bf668c856ce6e20af7f7bf2ce35f authored about 3 years ago by Guangchuang Yu <[email protected]>

Merge pull request #461 from xiangpin/graph_layout

Graph layout

075c538b874ccaa9a5c4678adc9e817e80629e43 authored about 3 years ago by Guangchuang Yu <[email protected]>

add message of graph layout

a055e962933d3ae8b8e13a9f67fd51abc4e63b1b authored about 3 years ago by xiangpin <[email protected]>

add graph layout

a28c2cef55b71001faf0bf08e3945c7f27728bc0 authored about 3 years ago by xiangpin <[email protected]>

Update NEWS.md

3ee8a38073e769045d50e441967846ed1fafb869 authored about 3 years ago by Guangchuang Yu <[email protected]>

Update facet-utilities.R

fixed #459

987e3580fa8eb67d9a0b038dbba753e40d3119bd authored about 3 years ago by Guangchuang Yu <[email protected]>

direct support kmeans

c94feaac0a666d20273bc1b6f949483db56dde3d authored about 3 years ago by Guangchuang Yu <[email protected]>

scale_color_subtree

e005bd2c3736983ef9ccaf72844297a302e61b4f authored about 3 years ago by Guangchuang Yu <[email protected]>

todo

c4d964cc0caa3d8da8ab8afdb9b66a088b016963 authored about 3 years ago by Guangchuang Yu <[email protected]>

Merge pull request #452 from xiangpin/master

fix the mapping of line of geom_tiplab when align=TRUE

b2f783954bf5976e81826474b946a3e4d26fdbe4 authored about 3 years ago by Guangchuang Yu <[email protected]>

fix the mapping of line of geom_tiplab

e508c0df6aead4112844e437996ee6b969e6a2a3 authored about 3 years ago by xiangpin <[email protected]>

todo

434602471945548de45f9bcfd630778f0f081da4 authored about 3 years ago by Guangchuang Yu <[email protected]>

phylomorphospace

adcffbea8b53a67e76d4cdfd707dcb4d783092e9 authored about 3 years ago by Guangchuang Yu <[email protected]>

set na.value="white" in msaplot()

61a526436dcfd2a2fdb3c42975758eb8b2a5f57b authored about 3 years ago by Guangchuang Yu <[email protected]>

bioc version

0eaef8597a06beb1e4832b01ba85875230b4a900 authored about 3 years ago by Guangchuang Yu <[email protected]>

bioc

4277af1060168b7af9bd26979fbdce21ece85c5a authored about 3 years ago by Guangchuang Yu <[email protected]>

update bioc setting

94ce17dbbcd2cec0a4d85dd637b76d3658b3059a authored about 3 years ago by Guangchuang Yu <[email protected]>

update

83017e863c314ad499ad897282e38f033a8cd25d authored about 3 years ago by Guangchuang Yu <[email protected]>

update bioc version

1523340a87e7524865841cdb9f41702837962d3b authored about 3 years ago by Guangchuang Yu <[email protected]>

bump x.y.z version to odd y following creation of RELEASE_3_14 branch

5784ab3ba76c6fa3a11140d56a2b44b95903761a authored about 3 years ago by Nitesh Turaga <[email protected]>

bump x.y.z version to even y prior to creation of RELEASE_3_14 branch

b8b6fb8dd161189f0d7ac0e68352f624e3f186a5 authored about 3 years ago by Nitesh Turaga <[email protected]>

update news

2d6ac3f6c5ce478ec2a38622db562139a42e8e87 authored about 3 years ago by Guangchuang Yu <[email protected]>

Merge pull request #449 from xiangpin/graidient_roundrect_to_type

use type to control gradient and roundrect

845d2bd2aa19a21838c62156d1f468b0c65ed41f authored about 3 years ago by Guangchuang Yu <[email protected]>

update rd of geom_hilight

59bfaaa1e04ca1a6aa8b1de06b75b0ce1ac2ee9b authored about 3 years ago by xiangpin <[email protected]>

add gradient and roundrect options to type

1cd0c4054bf9ba6893827e14a8ceae9ca9d0b42f authored about 3 years ago by xiangpin <[email protected]>

add paper url

ca5e0d6f5f3bc5f309427ece73906c2bba326332 authored about 3 years ago by Guangchuang Yu <[email protected]>

Merge branch 'master' of github.com:YuLab-SMU/ggtree

dd1a460eb26868939e41b9f6d5e3cf52bd3771ed authored about 3 years ago by Guangchuang Yu <[email protected]>

bump version

40f8e5b3edde928b188cac319e0ee3f936e50b90 authored about 3 years ago by Guangchuang Yu <[email protected]>

Update NEWS.md

d896fe76347e0ce281a78229396bda4e37a6e32a authored about 3 years ago by Guangchuang Yu <[email protected]>

Update NEWS.md

ed2ef15c1624eb00308eccbf55277a19e997cb20 authored about 3 years ago by Guangchuang Yu <[email protected]>

update news

0285e5064aeef0106d00ca4b1cabccca04c533ec authored about 3 years ago by Guangchuang Yu <[email protected]>

Merge pull request #446 from xiangpin/geom_cladelab_extend

geom_cladelab extend

f54cb8b7404f9fb375174d8a91afbdc6110ecaa3 authored about 3 years ago by Guangchuang Yu <[email protected]>

emojifont should be load to display emoji font

ad15fcf4d06f6e99debe84272dc7629b0c20340e authored about 3 years ago by xiangpin <[email protected]>

Merge remote-tracking branch 'upstream/master'

75e86bf5d037484c169afc0ffa02d365d35bedc9 authored about 3 years ago by xiangpin <[email protected]>

extend of geom_cladelab supports two element vector

7c32e8f84a784dde1b39046d192abd3ce9e60e36 authored about 3 years ago by xiangpin <[email protected]>

update citatino

15c3faed821928739ff486f7f7ae8c5eaf94f223 authored about 3 years ago by Guangchuang Yu <[email protected]>

update docs

9d807a64d5d1d183a52e22b8eca1cdcb27d6ac31 authored about 3 years ago by Guangchuang Yu <[email protected]>

clean up code #445

17e4ed931d4a0bd54b3956897e22b09ce4b29ce5 authored about 3 years ago by Guangchuang Yu <[email protected]>

Merge pull request #445 from xiangpin/edge.lenght_negative

ignore negative edge introduce options(ignore.negative.edge=TRUE)

bd8d7bd013760813025cf27787f2bb5e949c8cda authored about 3 years ago by Guangchuang Yu <[email protected]>

typo

31cef4dc6bf6249a76312725e96867be165a0d95 authored about 3 years ago by xiangpin <[email protected]>

ignore negative edge introduce options(ignore.negative.edge=TRUE)

1a7273159d29b9c0ed73abd07ca1234654af4aab authored about 3 years ago by xiangpin <[email protected]>

Merge pull request #444 from xiangpin/hilight_gradient

Hilight gradient and round rectangular high light

7bf5375a23597d6f5e06452e09aa891a1165bcf9 authored about 3 years ago by Guangchuang Yu <[email protected]>

gradient or roundrect hilight

6603a1532461f4f91c05f9539b40a03d54739cfc authored about 3 years ago by xiangpin <[email protected]>

show.legend works

7c597ac2d336571922a747554ccc30331fd90c69 authored about 3 years ago by xiangpin <[email protected]>

hilight gradient

74d1d24cf4e27fc2b1d6b702709f9e980139f244 authored over 3 years ago by xiangpin <[email protected]>

todo

507c882ad6505e6c09da851d820db86a050c3437 authored over 3 years ago by Guangchuang Yu <[email protected]>

update docs

4be7f96d545e46ca80661103ee69f8a5a2d34fc0 authored over 3 years ago by Guangchuang Yu <[email protected]>

Merge pull request #441 from xiangpin/edge.lenght_negative

fix the issue of negative edge.length

b6965ad01869a01a177b2c84cbd5678ff96ce9b7 authored over 3 years ago by Guangchuang Yu <[email protected]>

fix issue of negative edge.length

8e7aa9d2d61d549d5f227b236f1cbd822e9d2307 authored over 3 years ago by xiangpin <[email protected]>

bump version

017cce61acb7374789fdc2e77302374be25918a2 authored over 3 years ago by Guangchuang Yu <[email protected]>

update docs

1b50cd1c697c71d9c70127ed862fea0fc6de7da9 authored over 3 years ago by Guangchuang Yu <[email protected]>

Merge pull request #439 from brj1/master

ggdensitree with align.tips=TRUE sets max x to 0

bc0f3a8715feb556b4579ff9d9c64d362c9e91f1 authored over 3 years ago by Guangchuang Yu <[email protected]>

ggdensitree with align.tips=TRUE sets max x to 0

5ad1c432aa554dd2e2b853d3eaa76366b16b3b8b authored over 3 years ago by brad <brad@BRAD>

fixed R check

5d2d10d4a5b99404c85fd4bb97e2f6948e13c64b authored over 3 years ago by Guangchuang Yu <[email protected]>

Merge pull request #434 from matt-sd-watson/master

custom column headers for gheatmap

1afac3539834c00128374f4b73552546a6d09dea authored over 3 years ago by Guangchuang Yu <[email protected]>

Use colnames levels and named vector change

d6fd0c7343888af81b6c2988acb98482767ae7eb authored over 3 years ago by Matthew Watson <[email protected]>

Update warning messages and handling bad indices in named vec

5a70208dbea02567bd11eec7fe2e99ef369b3ef9 authored over 3 years ago by Matthew Watson <[email protected]>

Update logic and handling exception cases

256c8863243fabcc5fb42cffde5f735d3986b8fb authored over 3 years ago by Matthew Watson <[email protected]>

Add option for custom gheatmap col labels

03a7b44797bc5da25893065518f0e92f9df7a2c0 authored over 3 years ago by Matthew Watson <[email protected]>

update docs

efea7e426fe87ac2b6442bf570cd3e9c2784197c authored over 3 years ago by Guangchuang Yu <[email protected]>

Merge pull request #433 from xiangpin/nudge_x_geom_segment2

Nudge x geom segment2

bea5ff69b67624762cc0d54122503c6bee51df1b authored over 3 years ago by Guangchuang Yu <[email protected]>

Merge remote-tracking branch 'upstream/master' into nudge_x_geom_segment2

b80444fadc71656842b72b13c1f90fbd1251950d authored over 3 years ago by xiangpin <[email protected]>

fix the nudge_x of geom_segment2

d745cd6a3412dfa25bb3de3815f58c5b54406bd8 authored over 3 years ago by xiangpin <[email protected]>