Ecosyste.ms: OpenCollective

An open API service for software projects hosted on Open Collective.

github.com/YuLab-SMU/ggtree

:christmas_tree:Visualization and annotation of phylogenetic trees
https://github.com/YuLab-SMU/ggtree

xlim_expand

aed6d1a09850f396073d4b5c57282ae5b14824c1 authored about 8 years ago
expand_xlim

6d37297b4cad1cd829250bbb834f30065437ce1e authored about 8 years ago
bug fixed of parsing treetext in beast file

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@123195 b...

f871a44c77334f3fe8c9f3bbfebdfdf708f0bade authored about 8 years ago
bug fixed of parsing treetext in beast file

b58e008851a970f6e16d8a59f6bc6909242e4bf1 authored about 8 years ago
xlim_tree

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@123191 b...

e90134d2117fc7dd6661dedce6b7e7a4c9572d45 authored about 8 years ago
xlim_tree

612da065c515c6e1c945336f1599a02981b4f7e2 authored about 8 years ago
typo

58f6ac9a2990e0bcb57b1759de652b36ff5f112b authored about 8 years ago
set_tree_xlim

1d56166dab66abbb62559e4011b579cfd39c9bbc authored about 8 years ago
set_tree_xlim

6133057c3b34a7fb43a227a22aac8f1ad33d89ee authored about 8 years ago
docs

4b9c3fbb0731898970f699dabb70c218e7a41185 authored about 8 years ago
Merge pull request #83 from caseywdunn/master

NHX trees- add tip numbers to @nhx_tags and add tests for parsing

fca22c8f807b58963215b666bef55a10faad1d44 authored about 8 years ago
now testing parsing of tip tags and node numbers

cfc94599b5656826445fa6648172f126e83bb81b authored about 8 years ago
added nhx test file

96ad91dde1b83e98c5c70f0f0d1f4288c6c9c2b6 authored about 8 years ago
added tests for nhx and modified nhx parsing to retain tip node numbers

ba9d91e98f3a94c49a779d292103d510ee3e37fe authored about 8 years ago
author role

335d692580be4dea5df626277104f39757c83828 authored about 8 years ago
update %+>%

b5282f45c15a48fa0f2871e3cc3d993a2e915a23 authored over 8 years ago
facet_plot

3869d235d578ebef9199a1dc149e611e3895bdf1 authored over 8 years ago
facet_plot supports ggbio::geom_alignment

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@123042 b...

189e99b242605864ecc92764f14a91f27485df86 authored over 8 years ago
facet_plot supports ggbio::geom_alignment

09d5ff66402c9342e26a1e4909f0883120133d43 authored over 8 years ago
remove Author field

25002c222da1637f3553ad2a2c6225d43a5fb63b authored over 8 years ago
add ctb

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@122979 b...

ae79357644196e14ac50d35ca34c2c7282a2aae2 authored over 8 years ago
update docs

6384c840b5567850bb88f2ac410518877baf889f authored over 8 years ago
add ctb

825952edaae717eddf9779c484f6b036d36f6fa6 authored over 8 years ago
add ctb

851824ece31b4ca8c6a04934e7a8bd47514f6d46 authored over 8 years ago
make tree stats available in facet_plot <2016-10-24, Mon>

0fc0184a2ecdabb72922059ea24f9bc047b5667e authored over 8 years ago
typo

6bc1d832ea3ddf1b9ad4445c5626bcde0f291e0c authored over 8 years ago
update links

2aa2443d40c2d977aa039bcd906aa8ec3b131458 authored over 8 years ago
typo

d1b5057c695011c339ede5579a2c26728ca99b8b authored over 8 years ago
bootstrap in newick format

53ea62d230c1caec0c99717a35688f33c2e41a4f authored over 8 years ago
update docs

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@122813 b...

37fc13d8b9c3ae50f34e38fffbd73dda82b44a4a authored over 8 years ago
update docs

8c5f32a7aed5a0cc081070d70f58ec50760de0a8 authored over 8 years ago
bioc 3.5

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@122737 b...

7d3e8583379dac10ba875bd2280987acd720ff65 authored over 8 years ago
bioc 3.5

d941d2fd2157fb549465e8a06de1f7ef56d12e89 authored over 8 years ago
bump x.y.z versions to odd 'y' after creation of 3_4 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@122712 b...

8d507083f487f576533c2dc760846e46be2ccf2c authored over 8 years ago
bump x.y.z versions to even 'y' prior to creation of 3_4 branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@122710 b...

755e09aa58a35b0f6242efde0fa93179599cb061 authored over 8 years ago
emojifont

089a62a1288e990a72820083acce65231433b16e authored over 8 years ago
blog entry

aa5c020a0c1a826a6afdf59070c1f7b9ea5ddb1e authored over 8 years ago
meshes

cc7b21bec619ea431d2a131f5f135b6e78707bf0 authored over 8 years ago
featured_img

b085e41da27930372a642c8031212968031710cb authored over 8 years ago
read.nhx supports newick file

f55f0c6838da52b89fd07d3cbb6a6460d0d26a81 authored over 8 years ago
read.nhx support newick file

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@122503 b...

47975aa066a9637b49f7fc704836ee220f9d6796 authored over 8 years ago
update site

0cbb2c5e22932cf341de8923f428ec3db09969e8 authored over 8 years ago
featured_img

0046baeaf14764d489ce87e6ed8b0d3a06d38e71 authored over 8 years ago
read.phyloT for parsing newick format of phyloT output <2016-10-11, Tue>

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@122189 b...

a71e1c25a95f60170bcfc3f8700c849d897dc315 authored over 8 years ago
read.phyloT for parsing newick format of phyloT output <2016-10-11, Tue>

cae059695a964bbab4a03716ea0a870995175263 authored over 8 years ago
fixed aes mapping in geom_strip <2016-10-11, Tue>

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@122185 b...

4f1e7f56f8c07a019fb0a90e1263daf1fc346e05 authored over 8 years ago
fixed aes mapping in geom_strip <2016-10-11, Tue>

07cd1bdc86a3998c6ac01582044584d5f3650003 authored over 8 years ago
test

32ca0fa4f54d31b8bcfad696a572219d14b8dedc authored over 8 years ago
remove todo

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@122181 b...

4325239237b4b9b2402b634d0cd45f4440045889 authored over 8 years ago
removing site

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@122180 b...

ba030cc8f31cc0dfd43a9efeb9b351ee6c3c318e authored over 8 years ago
Merge branch 'devel'

54eef8bdf70fcc0b2115b4347b705f5b84321e13 authored over 8 years ago
devel branch

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@122178 bc3139a8-6...

3a43e1d290ff7357221278377879ccab52592d40 authored over 8 years ago
devel branch

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@122178 b...

31d3114e9d111c3a79f7a38699e107343a20b167 authored over 8 years ago
Merge branch 'devel'

43050b52d4154f1a231904b8bc59061b4c38749c authored over 8 years ago
devel branch

ab0ebf66452c82983e248e19136c5ee8fbdeb375 authored over 8 years ago
Merge branch 'devel'

cf6edb68f94528018fdb67f585cb11a61b03215f authored over 8 years ago
devel branch

0491400fc353f67bc19aef7eeb1d2f8349efea4e authored over 8 years ago
devel branch

c039b05abb9678901659242e1e5951886ff8cdba authored over 8 years ago
Merge branch 'devel'

30bb5dfd13ed23dbb913cb6698332aeec13337e1 authored over 8 years ago
travis build

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@122177 bc3139a8-6...

6caf452e9b34b712ba690ee5f001622711fd38d0 authored over 8 years ago
travis build

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@122177 b...

0b084dba35453c6c46a8b3817f3d52ef344f3a1f authored over 8 years ago
site

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@122176 b...

f5727347d5c749d51879ff91195bd7e6d7d21ef9 authored over 8 years ago
site

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@122176 bc3139a8-6...

9b6fd0588898e53a0b5ef2b27353b4a2967b4a1f authored over 8 years ago
travis build

1fd26b5bfebaa29d892eb20291dd5a3210d03ed6 authored over 8 years ago
site

2dba0a46631010f448d34a23211d1beb92899bb0 authored over 8 years ago
remove site

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@122175 b...

3b666c3060a74d7189fa0edaf3967cad129a2cf6 authored over 8 years ago
remove site

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@122175 bc3139a8-6...

a3253ad571a86ab0c1c536e6fb7e7cd5e7a5b14a authored over 8 years ago
test

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@122174 bc3139a8-6...

30b81a5ef5ac6d97ef39a03ece3ca4f435befa73 authored over 8 years ago
test

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@122174 b...

ccb6b9189e833ee5ad6b98f701e2bfdb9e09bac6 authored over 8 years ago
fixed R check

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@122173 b...

da0f0f7f9513165bad61f20a4e98c8729f9745f7 authored over 8 years ago
fixed R check

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@122173 bc3139a8-6...

7ca12fe17a4eb7e21329e47ddda2452b9a037b0c authored over 8 years ago
fixed R check

5559d0ca19d327a5659596ba0ab88d47747ccd27 authored over 8 years ago
version 1.5.15

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@122021 bc3139a8-6...

a92aaed18788b50cdf2df97377a3f7301e973a56 authored over 8 years ago
version 1.5.15

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@122021 b...

bedefde134f2f2418f95ce137c9cdbb642069d46 authored over 8 years ago
check.aes

51aff5a93ffdad56b9339481b329abac5d1fbc9d authored over 8 years ago
recalculate angle when collapse, expand and rotate clade

b5bbb8c736add19aceead933c7b6a17300549b29 authored over 8 years ago
comment out geom_tippoint2

eb4959cd680660a4ff053311f97836d0ab0f5b78 authored over 8 years ago
comment out geom_tippoint2

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@121791 b...

869644d45e70b3fab7b13dc0cf254cb38f5e840b authored over 8 years ago
comment out geom_tippoint2

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@121791 bc3139a8-6...

0ce355699db1e3ff8a15737aae8457429c7f3c3a authored over 8 years ago
subset tip in geom_tiplab2

9fda90d12c48cb26ee5dc98bb355c08fac19ca83 authored over 8 years ago
subset tip in geom_tiplab2

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@121788 bc3139a8-6...

3a867717da3c2d08290306fbfbe8c94f442c94d7 authored over 8 years ago
subset tip in geom_tiplab2

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@121788 b...

97e7d34f52b0a1f3849bd58fe3265f9755b9f47c authored over 8 years ago
fixed geom_tiplab2

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@121787 bc3139a8-6...

02392a7aad147ea820906ae4833f3cf89f8ec27b authored over 8 years ago
fixed geom_tiplab2

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@121787 b...

4666eab4931b1a1b6f2da37e59fb81d2d5dc9278 authored over 8 years ago
theme_tree2

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@121780 b...

2b0f27d514d5fa943489dabd48d584c42fda08ec authored over 8 years ago
theme_tree2

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@121780 bc3139a8-6...

e785220cd671b0be57aa76b47c2e8d18733c0dac authored over 8 years ago
fixed theme_tree2

7acca8ed2336679b686583d981fd4453183c28bd authored over 8 years ago
colouring edges by user data

7148ccfb9a5072248817ddb590fa1b84bf5d1b6a authored over 8 years ago
add `compute_group` according to ggplot (v2.1.0) <2016-09-29, Thu>

626b299447f55bc4c92a917ec9814be03a6c41bc authored over 8 years ago
add `compute_group` according to ggplot (v2.1.0) <2016-09-29, Thu>

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@121523 b...

102483c0e7f6d411392f87fcbbf8d5f24c113a55 authored over 8 years ago
add `compute_group` according to ggplot (v2.1.0) <2016-09-29, Thu>

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@121523 bc3139a8-6...

4edbfa255ef39d58ee4d53540d3a7674b9f32ae2 authored over 8 years ago
update readme

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@121469 bc3139a8-6...

8fae79b538942e009fc4379be9ae845e358fa05c authored over 8 years ago
update readme

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@121469 b...

573ccecddb30ec117502fa5141b8e867d1935c68 authored over 8 years ago
remove duplicated file

b2eed1d2b3dee25d1bf07bdecab08151de6140fa authored over 8 years ago
fixed link

b75e259eb6ea3964d83c9f4935d89341152d95e1 authored over 8 years ago
link to my software

e149afdbca05d5a48ded525c2516d5338eeef554 authored over 8 years ago
tweet mention

75ec26fbceb59e6113d9959954b4e4344ae7f420 authored over 8 years ago
unit test of groupOTU & groupClade

git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@121230 bc3139a8-6...

33330426363e2672de4119d17b1149f9e215f1e9 authored over 8 years ago
unit test of groupOTU & groupClade

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@121230 b...

deef58153b6b4212a5d92f60898d8265dfe40db5 authored over 8 years ago
unit test of groupOTU & groupClade

48ee83f2305e7f090e5103ccb4b78c52852560e9 authored over 8 years ago