github.com/YuLab-SMU/ggtree commits | Ecosyste.ms: OpenCollective

o unrooted layout support branch.length="none", fixed #114

2d02a2e0f0436412cfedb6a61056616eacf89d5e authored almost 8 years ago

remove apeBootstrap and raxml object support as they were removed from treeio

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@127021 b...

905d1116d7275efd175f3b1037c2475e23e998fe authored almost 8 years ago

remove apeBootstrap and raxml object support as they were removed from treeio

69a22a72b0ebd6e67238901f598df616d6f63e67 authored almost 8 years ago

new pkg that imports ggtree

d4ac909a4702c0b8a23e78b1847a7a2486cd684a authored almost 8 years ago

update viewClade

d7e5aa0cf95be57794df044a73dc1c71a75f662a authored almost 8 years ago

use EmojiOne font

bf32bdf64c5257a64afdcc5a26fd231e81543f01 authored almost 8 years ago

emoji supported

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@126768 b...

275491b1b3919baa6a5607b3c4cc5392ea6e98b3 authored almost 8 years ago

parse="emoji" :)

d9033cf108793a2f278271b93242b0bc3e7af6ab authored almost 8 years ago

subset supports logical vector contains NA, and geom_cladelabel supports parsing emoji

9cbaf87bb99d0b6f2d2cbc95abbcc49a25ad660d authored almost 8 years ago

tweets in gallery page

7ea277097b999739a8400920114cccf52ab48b76 authored almost 8 years ago

update set_branch_length

b4142400f00a0dacf84cff9605a5fe62b374183d authored almost 8 years ago

update docs

e7943b2e59bd57f242e49430a4b4e2b22c61ccb5 authored almost 8 years ago

Merge pull request #112 from Bisaloo/patch-1

Add legend transparency to theme_transparent

b9e2dfaa13a4856470deb1d39959f7b8446faf2d authored almost 8 years ago

new citations

bd105c7be00972f6c698d0057baac076ed17c836 authored almost 8 years ago

Fix mess with additional parameters

cd5fb3e02294187ec9361003b4ae1334fef7baed authored almost 8 years ago

Add missing closing parenthesis

ced8b06a8d2a0823b316030664938f6e4c78c7a8 authored almost 8 years ago

Add legend transparency to theme_transparent

225f0e44e69f2667e4c6da288c0d57f65db89a02 authored almost 8 years ago

update gallery

3db372ed3fd960ccbd5e7b97f96edcb24ccb4c99 authored about 8 years ago

update gallery

42f91229cdc4b923b20d5ea2ed6809ac28e2b3f8 authored about 8 years ago

gallery page

6949e7b66f8c7e93630d87d881d3dce3294bcb07 authored about 8 years ago

new citation

7a57cc9ffb730ff82dd58efa70ac5180c26e06ea authored about 8 years ago

update citation

6788b0241a652cb72194288ecb75e92fa263036c authored about 8 years ago

update citation

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@126053 ...

a91c9f449fb73bb92990b4eab8e2841effea8d1e authored about 8 years ago

reverse_x and reverse_y parameters for inset

4931b0273ab105cc45ecedb877bfc2ecbecd84e5 authored about 8 years ago

bug fixed of viewClade

55e41b96e47866899d96223ed7027dc3691398d5 authored about 8 years ago

makefile

e855a3e5eed62e93984407805c588cc2c2fef00f authored about 8 years ago

update site

144ddd3162542985f1bda3997616cde1a4d6847b authored about 8 years ago

update makefile

d91c5b7fa95b7c68a0359cb56bd94c32ea5667bd authored about 8 years ago

treeio

949af741e85be1630b6b0377785dd2cea2a6c900 authored about 8 years ago

test

4c2e0194ec95bc42761cba6fb16a82a4e19c72ee authored about 8 years ago

test

6fe12e676ed655ebe153d532ad600e50a50fc611 authored about 8 years ago

test

423a4acbfd75ac55b85282e4590a3839e9d65a66 authored about 8 years ago

treeio link

b6ed0e1171487b2cab62ecc7576a2f8973005051 authored about 8 years ago

not labeling collapsed clade as tip

8640341d719e2dcb458a25cdbf05cf0602fe31e9 authored about 8 years ago

new version of fortify.phylo4(d)

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@125519 b...

96e584dbcfd6f7a11549f21eba71e3c80a2c713f authored about 8 years ago

new blog post

2e921107cab743ab0d1747c7f25e2047757bdee1 authored about 8 years ago

fortify.phylo4d via converting phylo4d to treedata object

64e967bfe4a05edc569a77ff85ae6dd8a9049284 authored about 8 years ago

treeio

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@125465 b...

d8a0e3503b1a4ff65c49270f3436b94d7cfdb6f9 authored about 8 years ago

better viewClade

65bd00ea333127efda1436f220f37c161051e9a3 authored about 8 years ago

fixed link in homepage

e6b7fb25e5ce52254bb716d0dd982ade083a7783 authored about 8 years ago

bug fixed of rm.singleton

eb1af8f2ddf40f4fede4dd86737b2aed202371da authored about 8 years ago

rm files

1d4d2dafd01c5a21d24986ff0cda0f2b1032b711 authored about 8 years ago

move code to treeio

1d7f426b6baf37357a7f0fcba48a643258dfc10c authored about 8 years ago

depends treeio

817c093d92e73970482421fadef52ff0d33f03dc authored about 8 years ago

update docs

599e2410d35bfd791db16d778d590c69da38c1b9 authored about 8 years ago

bug fixed

0710a7b778e9ce4f3480d0043d8e66efef9b2d21 authored about 8 years ago

bug fixed of get.tree for data.frame

1a0e6ac476e30ef773838548809d8e39a977fbcd authored about 8 years ago

typo

e46d615394b0fd59b49cd2d0e176e029fe872db5 authored about 8 years ago

add new blog entry

8628ce0dc588fb6c0f2f15de7e7b7eac591a8efc authored about 8 years ago

update docs

c77b52943f9e24a192cde9f6ffd39ef0c3b03ad3 authored about 8 years ago

prettydoc

858ecfa10c0bbc7601949a76e9e63057394b938c authored about 8 years ago

remove text

c7bd75c05a1b27a4fd91944120bcd77eb5b2a59c authored about 8 years ago

faq

c2aabe1940ca92c52b8e3244e901cc837ba1b6bf authored about 8 years ago

ggtree object

4e4df1e850f300eb51eae8ea87e0a8f373db082c authored about 8 years ago

update faq

49dc15c7b9c3ff4a306ebf689506809780d2ab36 authored about 8 years ago

Merge pull request #102 from brj1/master

branch.length parameter to work with phylo4d

f59b99791291fed2194073a0cf0c57c1b999d77d authored about 8 years ago

merge

041aebead38b645f481ad0f1d0e9b8ee065b88a9 authored about 8 years ago

added get.tree method for data.frame

e0430f69473f56de4b0005c7b4ac77a53118c3c7 authored about 8 years ago

fixed R check

9bd4fbabdb75c72b72a919b3310623fd8dea8324 authored about 8 years ago

nhx move to treeio

a76f35c19ebfc339ce514ec4b5332d81fdda6d54 authored about 8 years ago

is.ggtree

02a6bdec40d8a2133d4a116e41cb1c9dc4cc6274 authored about 8 years ago

branch.length support phylo4d@data

8d41c5d9a2c2f2757d099804889161801b665252 authored about 8 years ago

bug fixed of rm.singleton.newick

00bbb109fc35ad9cef505037ddf56350dfc18a3c authored about 8 years ago

check.param parameter in geom_tree

aeda44db950243ee65dfa3ae53b636b82f0d517b authored about 8 years ago

use message instead of cat

ca9b3756343d4c2ad74b957c92f8b6e93735ef2d authored about 8 years ago

postorder

b14d75e3013c067ae2fc4f89f05bacc80a0645c0 authored about 8 years ago

phylo4d

5f11aa56a82c4d0e0b8cdaee348e1245d64b3ba9 authored about 8 years ago

Merge pull request #97 from caseywdunn/master

Fixed internal node numbering in drop.tip()

91bb083c7ae10e72e8f05698940f4f849fc6bee1 authored about 8 years ago

incremented internal node numbers, now passes tests

6025c2e4a7a28e7c4e6232de94fa84c5462e40e7 authored about 8 years ago

internal node numbers not numbered consecutively after tips, wrote test for correct behavior that fails

2b1500a11ce7cb6398ff7b0e9019acd60d66c287 authored about 8 years ago

overlap parameter in groupOTU

3846507e4539cf31ef55e8eeea659ca57f16bf7e authored about 8 years ago

drop tip method

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@124180 b...

5ec4f2a3631c58fcf841ec6ea7df2400b49727f6 authored about 8 years ago

overlap parameter in groupOTU

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@124179 b...

0d9e240e1e35300ad4b74ebb7413ba556bc45dc2 authored about 8 years ago

wechat msg

0bd04dc5bff959d06875c6aee773416abc63e38d authored about 8 years ago

new blog entry

6838e87bf0fc3061f97b8bc25ebcfc4710debacd authored about 8 years ago

logo

e58bde0dd781be138551a23eaecb53cd268b92a4 authored about 8 years ago

docs

236fd72d57fdc36145ac11812760d188249072a3 authored about 8 years ago

logo

d8a220c3513d8db34ee60367845b3ac6220e0af4 authored about 8 years ago

logo

8c2334dd9a99be31b3ed32ad009dd03db19bed9d authored about 8 years ago

logo

4714b6a060cff27dae67334b99f62091e05c0969 authored about 8 years ago

ggplot2 2.2.0

fad06b2bd67c1a2676910fe0a5645faad9fac5e6 authored about 8 years ago

os x build

1ff74bf69c7a8b78e9c14d1d4ab96a54653e71dc authored about 8 years ago

os x build

1f54f5ca5275d1829d99a37aa06e554669c8d711 authored about 8 years ago

osx build missing pkgs

e886485f3341b8d24f4724bf279dde724d8775a4 authored about 8 years ago

fixed travis osx check

7cdec8eea382977fbabc4a8f7662de43b6f7621e authored about 8 years ago

fixed drop.tip issues

0b9c272fce5d6d38e5ce1268429667622a19320f authored about 8 years ago

Merge pull request #90 from caseywdunn/master

More nhx stuff

6b5450c170d066e0a6eb9eb45dda145c3dd72841 authored about 8 years ago

added drop.tip

b3528e999a40cd3649299256a7212088aa88db01 authored about 8 years ago

nhx_tags node column now numeric, and dataframe sorted on this column

ab5f8c8caa28bb6122fe1e77bb71d792f8f96430 authored about 8 years ago

biobabble

8f3a69cd2950ba04c1a315b2aa6575c322528f51 authored about 8 years ago

biobabble

b688c13a342332a5a61c331ec4a48dc436fd41ef authored about 8 years ago

biobabble

9820de1b4de4b22647a7ec3946be7b9a329997ef authored about 8 years ago

update news

d25b6d4b74dcfd06764a3c10bfc9f09eb5df5659 authored about 8 years ago

startup msg

a51a4376763ca5133a9937b5af637307d67b2a8e authored about 8 years ago

.onLoad

36b87ad2fb221187f3eec9e4d99f2b17347b79fd authored about 8 years ago

startup msg

c25bdbe610dd4dda0c7ca4106e45817524d866ff authored about 8 years ago

revts

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@123745 b...

5c02803ef763506dacd166014c4a2463c1132820 authored about 8 years ago

revts

718f3b75517958fc20d8c4685c16e2dc8cb7bbca authored about 8 years ago

make missing color invisible

39aaccd58c8fdbbc4ba8f6500bcaa2782628f736 authored about 8 years ago

xlim_expand

git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/ggtree@123214 b...

5f9c47a79424094f4cfd2ee28006a994a6203adb authored about 8 years ago