github.com/astropy/halotools commits | Ecosyste.ms: OpenCollective

Added documentation of an example merger tree analysis

d67aa5331e952b7b9ccb97a704fcdac197a1ba8b authored about 7 years ago

Finished new tutorial and added links in group_member_generator docstring

4d5d555b738696912519b6784b667c69fefd26b1 authored about 7 years ago

Improved documentation for monte_carlo_from_cdf_lookup, resolving Issue #802

59e4d10948d442952d06e757d439b7bd917e2c35 authored about 7 years ago

Now the halo_boundary_key is added to self._haloprop_list of the HodModelFactory.

cd048f3514a30030a902d67862f7e30c5a72c563 authored about 7 years ago

Fixed forgotten **kwargs argument when the Zheng+07 composite model called Zheng07Cens. Partially resolves #827.

bb36d9e5c9693bd1f6e04e3bf8324848ac6cca58 authored about 7 years ago

Merge pull request #852 from aphearin/mc_nfw_testing_fix

Improved numerical stability of monte_carlo_helpers mc_radial_velocity

38b62410700b3af8ea768e600a62a974fc33809c authored about 7 years ago

Improved numerical stability of monte_carlo_helpers mc_radial_velocity

3f7884fcdb873f5f39733891c71d6fd67aeb9d2c authored about 7 years ago

Merge pull request #840 from eteq/update-test_installation

Add test_installation function

8666728f35ab3172945a1025852ab23a8727a4a4 authored about 7 years ago

Added test_installation to top-level __init__ to simplify users just wanting to test their installation, not run the whole suite. Once the appropriate arguments are passed to the astropy test runner, this should resolve #803.

@bsipocz and/or @eteq - would one of you mind letting me know how to correctly pass keyword argu...

342876f21e5928f0be8673f8abb937ad444e9cec authored about 7 years ago

change to correct usage of args

e32dc8e777827b509448912a9040728bfb18a8b6 authored about 7 years ago

Merge pull request #847 from aphearin/remove_numpy10_compatibility

Removed python=3.5, numpy=1.10 testing configuration

66ea5ab14cc232743cb045f321ca100609c9dd83 authored about 7 years ago

Removed PYTEST_VERSION=<3.2 experiment suggested by @bsipocz as this did not resolve the issue. This commit removes python 3.5 testing altogether. Failures persist when changing to NUMPY_VERSION=stable, so the problem must be due to python 3.5 incompatibility. In python 3.5, and python 3.5 only, all *.py python testing module tests pass, all *.rst doctests fail.

d46c3fb619d9a281315c1db9c79ddbfe93fef906 authored about 7 years ago

Added forgotten env: SETUP_CMD='test' to newly restored python 3.5 testing.

5617f83cff26ff558518d78d1c019d7772730698 authored about 7 years ago

As suggested by @bsipocz - now adding PYTEST_VERSION=<3.2 to travis globals. Also restoring testing in python 3.5, but numpy=1.10 remains untested

0bb399f0c2d714773fd6b9de26e3576a128821ec authored about 7 years ago

Removed python=3.5, numpy=1.10 testing configuration

ea427ecb5ec1dc127f9824999ae03ecfe99854ed authored about 7 years ago

Merge pull request #839 from aphearin/changelog_update

Updated changelog

b34c83df986171c1454b2de8fc82dc478f8ec916 authored about 7 years ago

Merge pull request #838 from aphearin/unit_testing_improvements

Unit testing improvements

2b6e20fda9a9222bf066481945318d28e40f3b73 authored about 7 years ago

Updated changelog to include all PRs relevant to v0.6 up to present

7b4666f5e7f95c019a6d9b4607fb80cd84555d5d authored about 7 years ago

Fixed bug accidentally introduced with this PR in pure python pair counter

1a0d9e0fda2757608814bf0c5babff2335d52570 authored about 7 years ago

Improved testing of pairwise_distance_3d

c3fd69f66980d91b1e64c88dc4af6051466061ac authored about 7 years ago

Improved unit-testing of jackknife xy_z

2cdc64fdc3b68bbe6c7a94bb0e4877ce7ba9e804 authored about 7 years ago

Improved unit-testing of jackknife 3d

774a60b9b5baf590ce7cc90bdf8788803e9347b3 authored about 7 years ago

Improved unit-testing of pure python wnpairs_3d

18228a916827bd045a386e0650a5e10cd38162a4 authored about 7 years ago

Improved unit-testing of brute force pure python npairs_xy_z

b28ff1d3cc18e30ccc098a79f010ba1dceac54fe authored about 7 years ago

Improved bounds checking and testing of pure python npairs_3d

52ab0a69c731aa9cc7b708de19b9a75bb144f82f authored about 7 years ago

Added test_parallel_serial_consistency unit-test showing that an exception is raised when calling weighted_npairs_s_mu in parallel mode. See Issue #837.

CC @duncandc

modified: halotools/mock_observables/pair_counters/test_pair_counters/test_weigh...

4529aa5806d4542e25965984a68fbf9825b6b213 authored about 7 years ago

Added unit-testing of bounds-checking of weighted_npairs_s_mu function

43095dd6abd698cd9fc7ad3d5fbb7e51fbdbf084 authored about 7 years ago

Added unit-testing of _passively_decode_string

254dbfd3fbe4ec0fea4bd02479cafacfd5ca0b30 authored about 7 years ago

Added mock-population unit-testing for SFRBiasedNFWPhaseSpace class

f46188c89a174de31fc346f427d610c9725f868f authored about 7 years ago

Improved unit-testing for mc_generate_nfw_radial_positions

0ce33dbb537273f1cbc613127efe4a59f3fcf2dd authored about 7 years ago

Added unit-testing for io_utils

04720a5c1bd4590d5c6c443f259b51b6d6a149ad authored about 7 years ago

Added unit-testing for custom exceptions

3cb49a672dcb3651bfd9a3b5861085da6a2795f7 authored about 7 years ago

Added doctest to velocity_marked_npairs_3d and velocity_marked_npairs_xy_z functions. Up until now, these functions were not executed by any unit-test. The newly added doctest revealed a bug in both functions related to weight_func_id=0 not being recognized.

Additionally, the docstrings of both functions mention that further information about weight_fun...

ee85b89b31956322915d207bfd8a36ea4a6e135f authored about 7 years ago

Merge pull request #832 from aphearin/estimate_ngals_bugfix

Bug fix for estimate_ngals method

b05e50fae1d5b1cb9a7d058c468bc674ca658274 authored about 7 years ago

Merge branch 'master' into estimate_ngals_bugfix

087211682781c13ac81b7c2147a047d23e3b7b9d authored about 7 years ago

Merge branch 'master' into estimate_ngals_bugfix

e89194240d6c4933f9f1d8a80d98b2d6ed9890ec authored about 7 years ago

Merge pull request #833 from aphearin/its_docs

docstring improvements to build_cdf_lookup function

c2f81952b1a9b9e2db69a12a32a801fbda778ac5 authored about 7 years ago

Merge pull request #834 from aphearin/clipping_decorator_removal

Removed bounds_enforcing_decorator_factory

d5556d700d779faf5e6b7e5b3fcb5c9b26dcb5a1 authored about 7 years ago

Merge pull request #835 from aphearin/utils_docs

Add top-level documentation for utils sub-package

af4386a7f0683618935910eddfb42a3e82f6f812 authored about 7 years ago

A top-level summary of the most important utility functions now appear in the function usage documentation, addressing the first line-item of #802

25c1add04c3a2cc563a63bf11a2b764f4c0dd39b authored about 7 years ago

Updated testing suite to reflect new warning message

801a3c000ca4712f9017f0032fa435a2b95f0d1c authored about 7 years ago

Started to modify docs to address first line item in Issue #802

e57fd6ded61eb27c3c2a6c3631d79036cb2ed743 authored about 7 years ago

Removed bounds_enforcing_decorator_factory from repo, resolving #756

41ebd7100e90fa31407e05993dffda6e1b378621 authored about 7 years ago

Improved docstring of build_cdf_lookup function, resolving #787

3d8726c7fff9c6786b6b6dfbfb6fd09881a5a5b6 authored about 7 years ago

Resolved estimate_ngals bug pointed out by @KuanWang-Astro in Issue #801.

5d5dadd978b6417d353889379dcc5be766a8639d authored about 7 years ago

Merge pull request #831 from aphearin/py36_pr

Python 3.6 bug fixes

39fc1bb90803af643c03337709ab79dee3f54b65 authored about 7 years ago

@duncandc - I tried to follow the docstring to create what I think should be a pretty good unit-test ensuring consistency between newly-added rp_pi_tpcf_jackknife and wp_jackknife. I think this test should pass if the docstring correctly describes how to access elements of the returned covariance matrix. It could be that the code is fine, but at the very least I think the docstring cannot be correct (copied below for convenience, though see the failing test test_wp_jackknife_consistency in the testing module added by this commit).

```
To access the covariance between
the (ith rp_bin and the jth pi_bin) and the (kth rp_bin and...

06317078972785e65fe15ef3fefc2041a4f92ae1 authored about 7 years ago

halo and particle cache logs now use compare_strings_py23_safe method

732327d72cc109d62a8b7b2bdcf0b55d54053f29 authored about 7 years ago

Now using _passively_decode_string in ascii readers

69500087a7b7ebbb287aa665453a2025d5d6a223 authored about 7 years ago

Added new utils module storing a few common patterns for comparing strings in a python 2/3 compatible way

127bea043683643bb6f3c57480fd1294a6067b9b authored about 7 years ago

Updated test suite

abc3f2ccc7114c23416a4ff98eb5fd168070a7bf authored about 7 years ago

CachedHaloCatalog now uses _passively_decode_string method

5ee6740946d1426e414348a5a2ea89a07901d684 authored about 7 years ago

User-supplied halo and particle catalogs now store string metadata as np.string_ for consistency with updates to CachedHaloCatalog

ef02fc3204620712f4d4854c8d06961f2a76ea1f authored about 7 years ago

Merge pull request #822 from duncandc/mock_obs_devel

adding rp_pi_tpcf_jackknife function to mock_observables

8f61b0b80ad9ad88bc122652edb2002f12d37739 authored about 7 years ago

fixed do_auto=False bug

bdadbd2e52ac5f2586d15dfc890bbae65566e73c authored about 7 years ago

Added unit-test showing that wp_jackknife has the same do_auto bug recently fixed by @duncandc for the rp_pi_tpcf_jackknife function

2bf0196a2c87dab079c4f899ce8a16fba425883f authored about 7 years ago

Eliminted bugs in wp_jackknife by examining module with a linter

33a7aea21a327f76ba63e3e8e8cb41b1abdd6840 authored about 7 years ago

fixed bug when do_auto=False

c261ad25a3c2937f4123a15abcb4e4d15787074a authored about 7 years ago

@duncandc - found a bug (or at least a bug in the docstring) shown by test_do_auto_false function

ce186cdb79d1fd7833debb1c91c548499690b6cf authored about 7 years ago

Performance enhancement of unit-testing for rp_pi_tpcf_jackknife: 78.3s --> 1.6s

9fd488df26888668fc123a5b1d53310b777ebafe authored about 7 years ago

testing suite for rp_pi_tpcf_jackknife

f1ea1bd93b5ecdf588641bb85028a0a9b034ef56 authored about 7 years ago

edited changes file

3d611611829daadc7eeb8fcdb5dd0fe33ceadf6a authored about 7 years ago

updated doc string

c71dbacba9a63a6dd03379cdc10aafa0a62fe80e authored about 7 years ago

first pass at rp_pi_tpcf_jackknife function

55bf09f9d55f932bdb277a23baa4e848e9b10628 authored about 7 years ago

Merge pull request #820 from aphearin/author_email_change

Changed author email

3a8d9f8de2563f01fac153d7e6a874d0ac8f8eb2 authored over 7 years ago

Changed author email

42c81a8534910fbefd26ac48de91b25c6c60b831 authored over 7 years ago

Merge pull request #819 from tmcclintock/master

There was a typo in the documentation for the tpcf_jackknife function.

d39b3c36e3bb6ba964e2ccaf5cdbf5665ca763fa authored over 7 years ago

Commented out doctest of tpcf_jackknife to improve runtime of test suite, resolving CI build failure

fd8dadb5951978ecc8b63443271048d372ad906c authored over 7 years ago

Merge pull request #818 from duncandc/mock_obs_devel

bug fix for tpcf_jackknife

2690baa2fb884ba3e10b7ca3905b2a49d52268da authored over 7 years ago

There was a typo in the documentation for the tpcf_jackknife function.

946971f2988c01b05ea8fd070cb283f03739fe43 authored over 7 years ago

updated change log

6232fff92a73f6d6a55106877b24ea24420ba53a authored over 7 years ago

Merge branch 'master' into mock_obs_devel

610a7e7331bcd55b1dd35fbbfba81a89b2c6bbdd authored over 7 years ago

Merge pull request #817 from bsipocz/update-helpers-v2.0.2

Update astropy-helpers to v2.0.2

485d595c5f1fd83d0fa2450f858a3865891bb8df authored over 7 years ago

Merge pull request #814 from duncandc/wp_jackknife

adding w_p jackknife mock observable

f66a9cd6220306532d35ce9f494ce7f07ecf38fb authored over 7 years ago

Updated astropy-helpers to v2.0.2

a3597b096b996903eb39cd69f1cbbdad25f20bbf authored over 7 years ago

updated changelog

a6daa520b3b4db4e98bbc981bb338cc884e2bcc4 authored over 7 years ago

corrected normalization error for covaraince matrix

6554b611b514cfbb9a929466afec6d371fa7f89a authored over 7 years ago

updated doc-strings

1a515ed6afe120a5e53f086912f06b191534defd authored over 7 years ago

undo changes to tpcf_jackknife

8f770cd5012115fbf1bc244ad0f1a643ecb89937 authored over 7 years ago

undo changes to tpcf_jackknife

a0888fd37c79b793892fe99f0b564beaaf1d34d2 authored over 7 years ago

added tests for wp_jackknife and npairs_xy_z_jackknife

7b8f16b7886c4257308366671d794bc86a6c751e authored over 7 years ago

added static typing for square distances which increases performance by a factor of 10

d823d636853abdb5184afc37a522b87e7d8421ad authored over 7 years ago

fixed covariance calculation in tpcf_jackknife function

dc77099fc8d3c629b346da63dca47275a07ba840 authored over 7 years ago

fixed error in covariance matrix caclulation

31ea76e88eef6ebf8ef4a42014fcb4780ec34aed authored over 7 years ago

fixed error caused by missing factor of 2*pi_max

87f120a014256f796b1a0d1ad2ea38c17bc8e828 authored over 7 years ago

modified pair coutning engine and changed names to _xy_z to be consistent with previous code names

6d6a3a2dec132937f150ecdafa038c5cdb5948e5 authored over 7 years ago

Current status of branch developments:

The following files have been modified relative to master:

halotools/mock_observables/pair_coun...

f0353c2629ce617af4a4a0ad2690265b684493a7 authored over 7 years ago

Added dummy engine

f59a4e2cf39d14cbfa2c2f4b1000e608b858af9f authored over 7 years ago

Added npairs_jackknife_rp_pi module

44106b2149e814afbf0c663fd20be53a2a27dd84 authored over 7 years ago

Added wp_jackknife module

cc87fa43fb92e199584341d25c80b8986d155225 authored over 7 years ago

Merge pull request #811 from aphearin/tabular_ascii_reader

Added optional keyword argument to TabularAsciiReader

d49ccdb684c9e601ef3c97dff6e9ac0a6caf6800 authored over 7 years ago

Fixed bug in new TabularAsciiReader keyword argument

16ff18f78c5df8507db4a9da8eaf5e83c65d41b8 authored over 7 years ago

Added optional keyword argument to TabularAsciiReader

5a432e57a0bcad5b40f46e105f24ed18db593265 authored over 7 years ago

Merge pull request #812 from aphearin/drop_astropy_dev_py2

Removing `ASTROPY_VERSION=development` from python 2.7.x testing matrix

1eef91aa1cea68db2b2a3ddab24d1e352a98c68a authored over 7 years ago

Astropy development version no longer appears to support python < 3.5, so this commit removes ASTROPY_VERSION=development from the python 2.7.x testing matrix on travis - tagging @bsipocz and @eteq to confirm this behavior is intended

166f441199e6be069f5239b5dbf9b7565560e0fd authored over 7 years ago

Merge pull request #810 from aphearin/weighted_npairs_s_mu

Add new `mock_observables.pair_counters.weighted_npairs_s_mu` function

fdb89728e5a2e3a1c441ddbc0794dcd974bebc9b authored over 7 years ago

Updated changelog and docstring of weighted_npairs_s_mu

e68d8e186643183563e39edd9693cc3205ef6570 authored over 7 years ago

Added unit-testing for weighted_npairs_s_mu

954d6820be6eccd6e0212b1846a43acd08d2b2b0 authored over 7 years ago

Completed doctested implementation of weighted_npairs_s_mu

2968d94f20a34000a8421b3c949d867d77fee7a3 authored over 7 years ago

Implemented python driver of weighted_npairs_s_mu function. Still needs an engine

24b8dd3184a08493e9aa85b58d3b51d9d9ad39a4 authored over 7 years ago