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github.com/astropy/halotools

Python package for studying large scale structure, cosmology, and galaxy evolution using N-body simulations and halo models
https://github.com/astropy/halotools

Got rid of needless feature to optionally build lookup table upon instantiation of NFW profile object. Always builds now.

93fa658c06a3d9f3620ebca1435723710f167a3d authored almost 10 years ago by Andrew Hearin <[email protected]>
Added some broken files to test suite. May need to revert

70579c8b98ca4a6390e371097bb6ddd14959c028 authored almost 10 years ago by Andrew Hearin <[email protected]>
Slight restructuring of docs

b358913b11a97ac497889c16536f63a5be7b02eb authored almost 10 years ago by Andrew Hearin <[email protected]>
More docs tweaking

ee9d7df4f951b4a5027e4ce73e9c21f579e74982 authored almost 10 years ago by Andrew Hearin <[email protected]>
Minor changes to docs

ce3bfffebd9e1e660c201a2ec8d8de1e45a36729 authored almost 10 years ago by Andrew Hearin <[email protected]>
Finished package overview in the docs

debbd25594ee78f0ceeaa268936c17faad92cbd0 authored almost 10 years ago by Andrew Hearin <[email protected]>
Minor docs changes

3c6c059d6f3e359b6510fc2d071406ae18141e53 authored almost 10 years ago by Andrew Hearin <[email protected]>
Finished rough draft of Halotools Overview in the docs

e4b2aaba74b3e51fe9341c26d59cf8bea0e29dfe authored almost 10 years ago by Andrew Hearin <[email protected]>
Finished docs and testing of TrivialProfile

a0c4ee8af2b0caea13df3853306398c824a876db authored almost 10 years ago by Andrew Hearin <[email protected]>
Finished test function of TrivialProfile. Time to move on

cbf2cb80d7f295a7c458e720c349f9e0b22abe54 authored almost 10 years ago by Andrew Hearin <[email protected]>
Finished coding up TrivialProfile

582448cea869eae2b5d0b0be65c108511d10260e authored almost 10 years ago by Andrew Hearin <[email protected]>
Working on docstring of TrivialProfile

ef4c10aef331c3a458bc74176ff43bb2b281684e authored almost 10 years ago by Andrew Hearin <[email protected]>
Changed default settings of TrivialProfile so that haloprop_key_dict is an empty dict. Also changed super-class HaloProfileModel so that there is no prim_haloprop_key attribute

9d22227cfb80201e917647dfa17ed000f7328c79 authored almost 10 years ago by Andrew Hearin <[email protected]>
Minor changes to TrivialProfile

49965e37f99fe6f0a0303853b72a93317da1826e authored almost 10 years ago by Andrew Hearin <[email protected]>
Did away with override of cumulative_mass_PDF within HaloProfModel - relocated to TrivialProfile

4407c5290926de7825f65607a2266b0289d5075d authored almost 10 years ago by Andrew Hearin <[email protected]>
get_param_key --> _get_param_key

282375b799a615b2ffab97e1514b671556cc371b authored almost 10 years ago by Andrew Hearin <[email protected]>
Working on docstrings of methods of HaloProfModel

53dcd8544a3ee4557db0030f54a27c1d7ebb5a26 authored almost 10 years ago by Andrew Hearin <[email protected]>
Worked on docstring for HaloProfModel

d5828e5da653949f74cb3d45baaf0145f8d66d05 authored almost 10 years ago by Andrew Hearin <[email protected]>
Docstring modification to NFWProfile

801985006d2d2decc10814d0c19f1fadc0876f57 authored almost 10 years ago by Andrew Hearin <[email protected]>
Cleaned up docstrings for ConcMass class. Moving on to halo profiles now

d2fd34f8309d7b9e42c5f8f44008211c2d2e9efe authored almost 10 years ago by Andrew Hearin <[email protected]>
conc_mass relation passes straightforward tests

9779f414f66ef04acdf7b7b702ce5e629228bfa6 authored almost 10 years ago by Andrew Hearin <[email protected]>
Starting to build test suite of halo and galaxy profiles

ebdb82293576c1832790e991e6158ba5e29ebc49 authored almost 10 years ago by Andrew Hearin <[email protected]>
Added file to halotools/astropy_helpers/astropy_helpers/sphinx/themes/bootstrap-astropy/static/large-scale-structure.png

Changed single line in bootstrap-astropy.css to use this new png.

These changes had already bee...

803937b83ee60a883a6b66749844001b90490fac authored almost 10 years ago by Andrew Hearin <[email protected]>
Changed astropy-helpers after having already changed it in another branch

a19afc57a0a00b97c9bc10f42c9de733234eea12 authored almost 10 years ago by Andrew Hearin <[email protected]>
Modified astropy-helpers to update to my theme

d3d2c19f5e25cba4d3d2c79159c57490f0e4db75 authored almost 10 years ago by Andrew Hearin <[email protected]>
Minor modifications to css theme

8d1e21add854352a09bd6cf2539b87336de335df authored almost 10 years ago by Andrew Hearin <[email protected]>
Enabled doctests, fixed bugs

385822ad4fca533252d67715016adf86a44dd55b authored almost 10 years ago by Andrew Hearin <[email protected]>
Finished fixing links between documented functions

ab9950ae5c112572819b57756fd48d30b8c4822b authored almost 10 years ago by Andrew Hearin <[email protected]>
Refactoring blueprints and preloaded models

623440d2a0b902294df6bd0e477c992743a30ae0 authored almost 10 years ago by Andrew Hearin <[email protected]>
Fixed bug in param_dict propagation from composite into components. Will likely need to also be fixed for galaxy profiles

92a1fd01f2c2b20057c557cb82c3adb81db17c08 authored almost 10 years ago by Andrew Hearin <[email protected]>
Finished test function of Kravtsov04Sats

1400a9c10035df5299d61351cd12c1867af9b97d authored almost 10 years ago by Andrew Hearin <[email protected]>
Developing test suite for Kravtsov04Sats

a6670905e535ff1c686608201862e63e53ad9283 authored almost 10 years ago by Andrew Hearin <[email protected]>
Got rid of unnecessary input_central_param_dict

013ecf40fe9ae5ad6ae0f4e971a352aa05fc18d5 authored almost 10 years ago by Andrew Hearin <[email protected]>
Fixing dictionary inheritence of Kravtsov04Sats

1c0655b352db801b4c2de51861216c70013d39db authored almost 10 years ago by Andrew Hearin <[email protected]>
Started trying to introduce doctests

480546925f331dbe85f60a2d91ac4f4ff6bd4a2a authored almost 10 years ago by Andrew Hearin <[email protected]>
Fixed subtle bug in mean_occupation for satellites related to how input_param_dict is passed in the presence of an input_central_param_dict

b0b74c311d8b50c1f202874c069837c7a7342c10 authored almost 10 years ago by Andrew Hearin <[email protected]>
Slight re-factoring of Kravtsov04Cens to make way for alternative best-fit parameter sets

f1060ace0002a3cd1230d7c4f0e977a3521f0f8d authored almost 10 years ago by Andrew Hearin <[email protected]>
Deleted unnecessary prim_func_dict for central occupation model

b4160785d75b5be78bb9e30f03f394e96b496d93 authored almost 10 years ago by Andrew Hearin <[email protected]>
Looking closely at need for possibly obsolete bookkeeping devices, such as prim_func_dict

57c3b6abc64bf472f27526d9094bc1ee78f47c91 authored almost 10 years ago by Andrew Hearin <[email protected]>
docstring edits

43de61265ae05dcc06ba5afe2a438a1661429805 authored almost 10 years ago by Andrew Hearin <[email protected]>
Still refining docstrings of hod_components

b5fd21365a8e6d648c3794ce04a00b4ae17a7b86 authored almost 10 years ago by Andrew Hearin <[email protected]>
More docstring changes

7ea0c5bee52bac6ebb5597cf1e0a867872dfeced authored almost 10 years ago by Andrew Hearin <[email protected]>
Modified more docstrints of cens

3dec47f0ead321376f8f9565be43f36b4030b0d2 authored almost 10 years ago by Andrew Hearin <[email protected]>
Modifying docstrings of Kravtsov04Cens

94387417dfb15617e8d8cccbee5c2ff30e383921 authored almost 10 years ago by Andrew Hearin <[email protected]>
Docstring changes

e3c85aebd6c3bbea0545318bc9e134437d696c3b authored almost 10 years ago by Andrew Hearin <[email protected]>
Included hod components in the empirical_models package

c63a9fdc7bbc4a91102daaa8c3599a635868416f authored almost 10 years ago by Andrew Hearin <[email protected]>
minor changes to __all__

bfbdde12dffa8fb50107df76fd84d7b550969af0 authored almost 10 years ago by Andrew Hearin <[email protected]>
Started to link test suite into docs

05d6e876f8579ecbb45c4025a4bc26b5775b5b1d authored almost 10 years ago by Andrew Hearin <[email protected]>
Added __all__ entries to test_empirical_models and __init__

cfba07f4fc10dc7ad4293eb6944d85868b247ae1 authored almost 10 years ago by Andrew Hearin <[email protected]>
Renamed test directory for empirical models

eaa3af9618292ea74df37edab6bacc60be34eebc authored almost 10 years ago by Andrew Hearin <[email protected]>
Finally figured out how to link Ref/API together

04bfa9fdb823254a1bbfa7867a942bcf4b65ad35 authored almost 10 years ago by Andrew Hearin <[email protected]>
Starting to weave Ref/API docs together

79c7c872acf20c74f0f3e923f8400016cd8fd40b authored almost 10 years ago by Andrew Hearin <[email protected]>
Trying to figure out how to link API reference to narrative docs

19b57a7bc7d6bb8b473fff437941ee449668b100 authored almost 10 years ago by Andrew Hearin <[email protected]>
Changes to models description

1c92add0778d70f45ce2b4ad9ac53440b4a74295 authored almost 10 years ago by Andrew Hearin <[email protected]>
Building docs based on new code structure

555f0860e324b0a76588b04364728010ac73047d authored almost 10 years ago by Andrew Hearin <[email protected]>
Added example_tutorial.rst back into repo

bbf89f6a3702f887e415580a2cab2e669d305184 authored almost 10 years ago by Andrew Hearin <[email protected]>
accidentally deleted example_tutorial.rst

61605dff013dcfe518c84362cc417a377c3f81b7 authored almost 10 years ago by Andrew Hearin <[email protected]>
Trivial cleanup change

9d2c203dd96f955ac5a026f65949e600da782272 authored almost 10 years ago by Andrew Hearin <[email protected]>
Finished writing test suite of Kravtsov04CenOcc

e702d704e2b75f44fb96f5d3e16baab2009ff30f authored almost 10 years ago by Andrew Hearin <[email protected]>
Refactored kravtsov cen test to re-inculde good tests

7b964e8841741a2ba5b96f5e52c0a2479bd8a826 authored almost 10 years ago by Andrew Hearin <[email protected]>
Refactored kravtsov cen test to throw out good tests

8d93ee168d75cc0b8c920a02fbe24526390691d9 authored almost 10 years ago by Andrew Hearin <[email protected]>
Refactored kravtsov cen test

e112f62f694e05622f3527b31e39af562250dc68 authored almost 10 years ago by Andrew Hearin <[email protected]>
Finished testing kravtsov cens occupations

0742ccebfb77d8f0baaa9b70e358faf0a1ea3c06 authored almost 10 years ago by Andrew Hearin <[email protected]>
Refactoring tests of Kravtsov04 blueprint and model

072cfeb6d4fe16ce39c3be5ae171f7148fa00a8a authored almost 10 years ago by Andrew Hearin <[email protected]>
Building test suite of hod_components

d922549edc5a4b703abe0f8f9bef8223817fb452 authored almost 10 years ago by Andrew Hearin <[email protected]>
Writing full-on test suite for Kratsov04 blueprint

bebf1807ca4f64884f577cebfcf3e3d4639a876d authored almost 10 years ago by Andrew Hearin <[email protected]>
Starting to build test suite of preloaded blueprints

19505f3834f641d33f96c6c0c3259ecc1077f274 authored almost 10 years ago by Andrew Hearin <[email protected]>
Deleted some more print statements. Runtime to populate a -20 mock: 225 ms

aa2e2921945de20acd537ff927110e36337e67c3 authored almost 10 years ago by Andrew Hearin <[email protected]>
Got rid of obsolete in-line print statements

fd8f383a509799f0cf952775eb3e19a7a42501c0 authored almost 10 years ago by Andrew Hearin <[email protected]>
Mock now successfully populates. Satellite positions are super-duper buggy. Build time is about 300ms

77febb7d3cfd858f3e38c6afc8ef106763d15a84 authored almost 10 years ago by Andrew Hearin <[email protected]>
Solved very pesky problem of data typing for string entries in _allocate_memory

c7fa87fa74cc0c4367ab9f70d08b30e84fd6f085 authored almost 10 years ago by Andrew Hearin <[email protected]>
Navigating long derived behavior chain to assign digitized halo profile parameters in mock factory. Still broken

533be4ac1ccb57c6d3bfcb71bcf68b3d5dd23b79 authored almost 10 years ago by Andrew Hearin <[email protected]>
Need to sort out change of derived behavior for cumu_inv lookup tables

f88eddb8763f0fd92b68f973a635a046a86b6756 authored almost 10 years ago by Andrew Hearin <[email protected]>
Fixed bug related to broadcasting multiplication of numpy arrays

9ae1ce64f9965c30545bf53df29f6a9b08acef76 authored almost 10 years ago by Andrew Hearin <[email protected]>
Fixed calls to functools.partial

4fb6dec35728303d68d8a63abc9834bc92dfa557 authored almost 10 years ago by Andrew Hearin <[email protected]>
Changed all calls to np.repeat, for completeness/consistency

964e27d8f43c9be9301e5415150070410ab23be7 authored almost 10 years ago by Andrew Hearin <[email protected]>
Fixed call to np.repeat. Now use axis=0 to permit repetition of multi-dimensional arrays

e64f35dbc06c063679cac66b62e9e58dd09078a3 authored almost 10 years ago by Andrew Hearin <[email protected]>
Changed memory allocation to be numpy arrays of dtype object

61325ee6c3b912c8426a614a470a1f14de5de3e6 authored almost 10 years ago by Andrew Hearin <[email protected]>
Fixed bug in logM <--> mass satellite occupation.

mock._allocate_memory() now appears to be debugged for
simple Kravtsov04 model, and runs in 164ms...

88820243e97560425ea893585adbc6bf096993d0 authored almost 10 years ago by Andrew Hearin <[email protected]>
Central occupations appear to be correct now

18c173caa1337c711fb52f6907bc9517cf24b586 authored almost 10 years ago by Andrew Hearin <[email protected]>
Fixed logM <--> mass bug

f3df987b1010ae534fca6b004c44c100724bbec5 authored almost 10 years ago by Andrew Hearin <[email protected]>
mock has buggy, but unbroken, _allocate_memory method

4d735a2daac2a5be808ca98f8910f929dab305b8 authored almost 10 years ago by Andrew Hearin <[email protected]>
Switched to **kwargs for passing input_param_dict

9a17a91ad2ecd33fba98ec81404062d5920cd802 authored almost 10 years ago by Andrew Hearin <[email protected]>
Folded in mc_occupation_gal_type method to set_primary_behaviors

81686d9d502df6b5b8e26e0981d2da5189a1c89d authored almost 10 years ago by Andrew Hearin <[email protected]>
Added mock test that fails

c1e9499cf51767a1eae31e9ce774648ffa7a1f2e authored almost 10 years ago by Andrew Hearin <[email protected]>
Fixed some trivial bugs in hod factory that were causing

the mock factory to be unable to instantiate,
which it now can do.

ee59190b4aaee9b64d0085dd0f7c026ae96b10fe authored almost 10 years ago by Andrew Hearin <[email protected]>
Employed cut on host halos in process_snapshot

caace777b6a361a7117ca169a69492fb3686c4c8 authored almost 10 years ago by Andrew Hearin <[email protected]>
Fixed __all__ for a few empirical model modules

3f7c8574bdf497bd7651933cd39e517590c896f1 authored almost 10 years ago by Andrew Hearin <[email protected]>
Updated some of sim_manager to work with re-formatted hdf5 catalogs

183104e52ee9b5852620280e68592878864e40fa authored almost 10 years ago by Andrew Hearin <[email protected]>
Modified gitignore so I can test halotools with IPython notebooks

52232f630a10b8c5c3ae03701a278c69403be02c authored almost 10 years ago by Andrew Hearin <[email protected]>
Merge pull request #29 from duncandc/master

fixed typo in two_point_correlation_function_jackknife

70c751917ca548cb55d2b191e5597d46c13e8a70 authored almost 10 years ago by Duncan Campbell <[email protected]>
fixed typo in tpcf jacknife function

ba24aacd6855049dbba9c13796efdb07ed98e5a8 authored almost 10 years ago by Duncan Campbell <[email protected]>
Merge remote-tracking branch 'upstream/master'

71ee8116e84731cf5dc3ddaf57b4c1b5270fef44 authored almost 10 years ago by Duncan Campbell <[email protected]>
small changes

48e08c95c0c0024dad0059e301635e2ed252fbd4 authored almost 10 years ago by Duncan Campbell <[email protected]>
Merge pull request #28 from aphearin/master

Removed ktan wrapper from repo

56cf131d618bc1b7a5f36c57bebc9a18ac0773c9 authored almost 10 years ago by Andrew Hearin <[email protected]>
Removed ktan wrapper from repo

130cea19b5bb2c40de3bedcef98ad427cdf3468e authored almost 10 years ago by Andrew Hearin <[email protected]>
Many tiny bug fixes related to hod factory. Many more to go, but composite model builds now

ace5662833805c78ff159e311f08a0c38eb428a1 authored almost 10 years ago by Andrew Hearin <[email protected]>
Fixed bugs causing pre-loaded Kravtsov04 blueprint to fail

8ff0032c94c62f87a9a6e63ed7e6c4a5434fa109 authored almost 10 years ago by Andrew Hearin <[email protected]>
Simple re-factoring of hod factory

d10862f75c6d3855942219a5ce81fc1a2e5ab0ec authored almost 10 years ago by Andrew Hearin <[email protected]>
Reorganized set_gal_types in both hod and mock factories

de0bf480d8bae15ec2fe9a66320aa18cf24f9668 authored almost 10 years ago by Andrew Hearin <[email protected]>